RNA–Protein interactions for RNA: ENST00000492887.5

FDPS-218, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 2

Gene FDPS, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-218ENST00000492887 NISCHQ9Y2I1 1504 aa18.46■□□□□ 0.55
FDPS-218ENST00000492887 AEBP2Q6ZN18 517 aaPredicted RBP18.15■□□□□ 0.5
FDPS-218ENST00000492887 CHIC1Q5VXU3 224 aa17.22■□□□□ 0.35
FDPS-218ENST00000492887 CCDC180Q9P1Z9 1646 aa16.34■□□□□ 0.21
FDPS-218ENST00000492887 SENP3Q9H4L4 574 aaPredicted RBP15.77■□□□□ 0.12
FDPS-218ENST00000492887 ABCC9O60706 1549 aa15.49■□□□□ 0.07
FDPS-218ENST00000492887 ZCCHC6Q5VYS8 1495 aaKnown RBP15.49■□□□□ 0.07
FDPS-218ENST00000492887 PHF23Q9BUL5 403 aaPredicted RBP15.44■□□□□ 0.06
FDPS-218ENST00000492887 DCAF8L2P0C7V8 631 aa15.35■□□□□ 0.05
FDPS-218ENST00000492887 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
FDPS-218ENST00000492887 NACADO15069 1562 aa15.15■□□□□ 0.02
FDPS-218ENST00000492887 RB1CC1Q8TDY2 1594 aa15.11■□□□□ 0.01
FDPS-218ENST00000492887 MYO15BQ96JP2 1530 aa15.1■□□□□ 0.01
FDPS-218ENST00000492887 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
FDPS-218ENST00000492887 SCRIBQ14160 1630 aa14.99□□□□□ -0.01
FDPS-218ENST00000492887 UNC13AQ9UPW8 1703 aa14.94□□□□□ -0.02
FDPS-218ENST00000492887 FOXD1Q16676 465 aa14.59□□□□□ -0.07
FDPS-218ENST00000492887 BICRAQ9NZM4 1560 aa14.57□□□□□ -0.08
FDPS-218ENST00000492887 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.093e-8■□□□□ 8.9
FDPS-218ENST00000492887 SUPT5HO00267 1087 aaKnown RBP14.34□□□□□ -0.11
FDPS-218ENST00000492887 BAZ1AQ9NRL2 1556 aaPredicted RBP14.33□□□□□ -0.12
FDPS-218ENST00000492887 CECR2Q9BXF3 1484 aa14.32□□□□□ -0.12
FDPS-218ENST00000492887 SMARCA4P51532 1647 aa14.31□□□□□ -0.12
FDPS-218ENST00000492887 MROH2BQ7Z745 1585 aa14.26□□□□□ -0.13
FDPS-218ENST00000492887 WIZO95785 1651 aa14.24□□□□□ -0.13
FDPS-218ENST00000492887 RSF1Q96T23 1441 aaPredicted RBP14.2□□□□□ -0.14
FDPS-218ENST00000492887 EIF4G1Q04637 1599 aaKnown RBP14.19□□□□□ -0.14
FDPS-218ENST00000492887 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
FDPS-218ENST00000492887 PEG3Q9GZU2 1588 aa14.06□□□□□ -0.16
FDPS-218ENST00000492887 TOP2AP11388 1531 aaKnown RBP14.05□□□□□ -0.16
FDPS-218ENST00000492887 CC2D2AQ9P2K1 1620 aa14.05□□□□□ -0.16
FDPS-218ENST00000492887 POTEDQ86YR6 584 aa14.02□□□□□ -0.17
FDPS-218ENST00000492887 BAZ1BQ9UIG0 1483 aaKnown RBP14.01□□□□□ -0.17
FDPS-218ENST00000492887 ATAD2BQ9ULI0 1458 aa14□□□□□ -0.17
FDPS-218ENST00000492887 MSH5O43196 834 aa13.97□□□□□ -0.17
FDPS-218ENST00000492887 HMGXB3Q12766 1538 aa13.95□□□□□ -0.18
FDPS-218ENST00000492887 NCAPD3P42695 1498 aa13.87□□□□□ -0.19
FDPS-218ENST00000492887 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
FDPS-218ENST00000492887 PRDM2Q13029 1718 aa13.8□□□□□ -0.2
FDPS-218ENST00000492887 PIAS4Q8N2W9 510 aaPredicted RBP13.62□□□□□ -0.23
FDPS-218ENST00000492887 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
FDPS-218ENST00000492887 ABCC8Q09428 1581 aa13.58□□□□□ -0.23
FDPS-218ENST00000492887 PLPPR3Q6T4P5 718 aa13.58□□□□□ -0.24
FDPS-218ENST00000492887 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
FDPS-218ENST00000492887 CFTRP13569 1480 aa13.55□□□□□ -0.24
FDPS-218ENST00000492887 KIF21AQ7Z4S6 1674 aa13.53□□□□□ -0.24
FDPS-218ENST00000492887 CADPSQ9ULU8 1353 aa13.53□□□□□ -0.24
FDPS-218ENST00000492887 NESP48681 1621 aa13.52□□□□□ -0.25
FDPS-218ENST00000492887 TRIM41Q8WV44 630 aa13.47□□□□□ -0.25
FDPS-218ENST00000492887 WRNQ14191 1432 aaPredicted RBP eCLIP13.45□□□□□ -0.26
FDPS-218ENST00000492887 SYNJ1O43426 1573 aa13.45□□□□□ -0.26
FDPS-218ENST00000492887 FANCD2Q9BXW9 1451 aa13.44□□□□□ -0.26
FDPS-218ENST00000492887 BIVM-ERCC5R4GMW8 1640 aa13.44□□□□□ -0.26
FDPS-218ENST00000492887 CEP164Q9UPV0 1460 aa13.42□□□□□ -0.26
FDPS-218ENST00000492887 PDS5BQ9NTI5 1447 aa13.41□□□□□ -0.26
FDPS-218ENST00000492887 TOP2BQ02880 1626 aa13.4□□□□□ -0.26
FDPS-218ENST00000492887 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
FDPS-218ENST00000492887 CUX1P39880 1505 aa13.36□□□□□ -0.27
FDPS-218ENST00000492887 DNMBPQ6XZF7 1577 aa13.36□□□□□ -0.27
FDPS-218ENST00000492887 PPP6R1Q9UPN7 881 aa13.32□□□□□ -0.28
FDPS-218ENST00000492887 ADRA2BP18089 450 aa13.3□□□□□ -0.28
FDPS-218ENST00000492887 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
FDPS-218ENST00000492887 MRC2Q9UBG0 1479 aa13.28□□□□□ -0.28
FDPS-218ENST00000492887 FAM9AQ8IZU1 332 aaPredicted RBP13.27□□□□□ -0.29
FDPS-218ENST00000492887 FGD5Q6ZNL6 1462 aa13.27□□□□□ -0.29
FDPS-218ENST00000492887 URB2Q14146 1524 aaKnown RBP13.27□□□□□ -0.29
FDPS-218ENST00000492887 THOC2Q8NI27 1593 aaKnown RBP13.26□□□□□ -0.29
FDPS-218ENST00000492887 WDR97A6NE52 1622 aa13.22□□□□□ -0.29
FDPS-218ENST00000492887 WDR62O43379 1518 aa13.21□□□□□ -0.29
FDPS-218ENST00000492887 POLA1P09884 1462 aaPredicted RBP13.2□□□□□ -0.3
FDPS-218ENST00000492887 SOGA1O94964 1423 aa13.18□□□□□ -0.3
FDPS-218ENST00000492887 EEA1Q15075 1411 aa13.18□□□□□ -0.3
FDPS-218ENST00000492887 CUX2O14529 1486 aa13.16□□□□□ -0.3
FDPS-218ENST00000492887 PBRM1Q86U86 1689 aa13.15□□□□□ -0.3
FDPS-218ENST00000492887 RUSC2Q8N2Y8 1516 aa13.15□□□□□ -0.3
FDPS-218ENST00000492887 RAD54L2Q9Y4B4 1467 aa13.15□□□□□ -0.3
FDPS-218ENST00000492887 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
FDPS-218ENST00000492887 KIF27Q86VH2 1401 aa13.13□□□□□ -0.31
FDPS-218ENST00000492887 TARBP1Q13395 1621 aaKnown RBP13.11□□□□□ -0.31
FDPS-218ENST00000492887 ABCA10Q8WWZ4 1543 aa13.11□□□□□ -0.31
FDPS-218ENST00000492887 KIF21BO75037 1637 aa13.09□□□□□ -0.31
FDPS-218ENST00000492887 ABCA5Q8WWZ7 1642 aa13.09□□□□□ -0.31
FDPS-218ENST00000492887 IFT140Q96RY7 1462 aa13.08□□□□□ -0.32
FDPS-218ENST00000492887 CUL7Q14999 1698 aa13.07□□□□□ -0.32
FDPS-218ENST00000492887 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
FDPS-218ENST00000492887 EIF4G3O43432 1585 aaKnown RBP13.06□□□□□ -0.32
FDPS-218ENST00000492887 GOLGA3Q08378 1498 aa13.04□□□□□ -0.32
FDPS-218ENST00000492887 LOC105371045A0A1W2PR82 267 aa13.03□□□□□ -0.32
FDPS-218ENST00000492887 GAPVD1Q14C86 1478 aa13.02□□□□□ -0.33
FDPS-218ENST00000492887 TDRD9Q8NDG6 1382 aaKnown RBP13□□□□□ -0.33
FDPS-218ENST00000492887 CTTNBP2Q8WZ74 1663 aa12.99□□□□□ -0.33
FDPS-218ENST00000492887 ERICH3Q5RHP9 1530 aa12.99□□□□□ -0.33
FDPS-218ENST00000492887 ZNF608Q9ULD9 1512 aaPredicted RBP12.98□□□□□ -0.33
FDPS-218ENST00000492887 UBTFP17480 764 aaKnown RBP12.97□□□□□ -0.33
FDPS-218ENST00000492887 AQRO60306 1485 aaKnown RBP eCLIP12.96□□□□□ -0.345e-7■■■■□ 26.6
FDPS-218ENST00000492887 RAPGEF2Q9Y4G8 1499 aa12.96□□□□□ -0.34
FDPS-218ENST00000492887 ADAMTS12P58397 1594 aa12.95□□□□□ -0.34
FDPS-218ENST00000492887 GRIN2BQ13224 1484 aa12.94□□□□□ -0.34
FDPS-218ENST00000492887 PRXQ9BXM0 1461 aa12.93□□□□□ -0.34
FDPS-218ENST00000492887 CARMIL1Q5VZK9 1371 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms