RNA–Protein interactions for RNA: ENST00000492883.5

CCM2-217, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-217ENST00000492883 NISCHQ9Y2I1 1504 aa33.44■■■□□ 2.94
CCM2-217ENST00000492883 CCDC180Q9P1Z9 1646 aa29.53■■■□□ 2.32
CCM2-217ENST00000492883 ABCC9O60706 1549 aa28.98■■■□□ 2.23
CCM2-217ENST00000492883 DCAF8L2P0C7V8 631 aa28.14■■■□□ 2.1
CCM2-217ENST00000492883 ZCCHC6Q5VYS8 1495 aaKnown RBP27.85■■■□□ 2.05
CCM2-217ENST00000492883 NACADO15069 1562 aa27.85■■■□□ 2.05
CCM2-217ENST00000492883 RB1CC1Q8TDY2 1594 aa27.84■■■□□ 2.05
CCM2-217ENST00000492883 MYO15BQ96JP2 1530 aa27.69■■■□□ 2.02
CCM2-217ENST00000492883 DCAF1Q9Y4B6 1507 aa27.62■■■□□ 2.01
CCM2-217ENST00000492883 PABPN1Q86U42 306 aaKnown RBP eCLIP27.2■■□□□ 1.94
CCM2-217ENST00000492883 SCRIBQ14160 1630 aa27.06■■□□□ 1.92
CCM2-217ENST00000492883 UNC13AQ9UPW8 1703 aa27.02■■□□□ 1.92
CCM2-217ENST00000492883 BICRAQ9NZM4 1560 aa26.95■■□□□ 1.9
CCM2-217ENST00000492883 SHROOM4Q9ULL8 1493 aa26.68■■□□□ 1.86
CCM2-217ENST00000492883 DNAJC5BQ9UF47 199 aa26.54■■□□□ 1.84
CCM2-217ENST00000492883 EIF4G1Q04637 1599 aaKnown RBP26.27■■□□□ 1.8
CCM2-217ENST00000492883 CC2D2AQ9P2K1 1620 aa26.13■■□□□ 1.77
CCM2-217ENST00000492883 CECR2Q9BXF3 1484 aa26.07■■□□□ 1.76
CCM2-217ENST00000492883 BAZ1AQ9NRL2 1556 aaPredicted RBP25.9■■□□□ 1.74
CCM2-217ENST00000492883 SMARCA4P51532 1647 aa25.86■■□□□ 1.73
CCM2-217ENST00000492883 ATAD2BQ9ULI0 1458 aa25.78■■□□□ 1.72
CCM2-217ENST00000492883 MROH2BQ7Z745 1585 aa25.78■■□□□ 1.72
CCM2-217ENST00000492883 NCAPD3P42695 1498 aa25.74■■□□□ 1.71
CCM2-217ENST00000492883 SMARCA2P51531 1590 aa25.71■■□□□ 1.71
CCM2-217ENST00000492883 PEG3Q9GZU2 1588 aa25.59■■□□□ 1.69
CCM2-217ENST00000492883 BAZ1BQ9UIG0 1483 aaKnown RBP25.58■■□□□ 1.69
CCM2-217ENST00000492883 RSF1Q96T23 1441 aaPredicted RBP25.57■■□□□ 1.68
CCM2-217ENST00000492883 HMGXB3Q12766 1538 aa25.55■■□□□ 1.68
CCM2-217ENST00000492883 WIZO95785 1651 aa25.45■■□□□ 1.67
CCM2-217ENST00000492883 TOP2AP11388 1531 aaKnown RBP25.22■■□□□ 1.63
CCM2-217ENST00000492883 SUPT5HO00267 1087 aaKnown RBP25.17■■□□□ 1.62
CCM2-217ENST00000492883 NESP48681 1621 aa25.08■■□□□ 1.6
CCM2-217ENST00000492883 CADPSQ9ULU8 1353 aa25.05■■□□□ 1.6
CCM2-217ENST00000492883 LAMC3Q9Y6N6 1575 aa24.98■■□□□ 1.59
CCM2-217ENST00000492883 CCDC88BA6NC98 1476 aa24.98■■□□□ 1.59
CCM2-217ENST00000492883 ERCC6Q03468 1493 aa24.98■■□□□ 1.59
CCM2-217ENST00000492883 PDS5BQ9NTI5 1447 aa24.92■■□□□ 1.58
CCM2-217ENST00000492883 CFTRP13569 1480 aa24.87■■□□□ 1.57
CCM2-217ENST00000492883 FANCD2Q9BXW9 1451 aa24.72■■□□□ 1.55
CCM2-217ENST00000492883 CEP164Q9UPV0 1460 aa24.67■■□□□ 1.54
CCM2-217ENST00000492883 KIF21AQ7Z4S6 1674 aa24.65■■□□□ 1.54
CCM2-217ENST00000492883 CUX2O14529 1486 aa24.61■■□□□ 1.53
CCM2-217ENST00000492883 MRC2Q9UBG0 1479 aa24.6■■□□□ 1.53
CCM2-217ENST00000492883 THOC2Q8NI27 1593 aaKnown RBP24.55■■□□□ 1.52
CCM2-217ENST00000492883 WDR62O43379 1518 aa24.46■■□□□ 1.51
CCM2-217ENST00000492883 PRDM2Q13029 1718 aa24.45■■□□□ 1.5
CCM2-217ENST00000492883 URB2Q14146 1524 aaKnown RBP24.43■■□□□ 1.5
CCM2-217ENST00000492883 ABCC8Q09428 1581 aa24.34■■□□□ 1.49
CCM2-217ENST00000492883 TOPBP1Q92547 1522 aa24.31■■□□□ 1.48
CCM2-217ENST00000492883 DNMBPQ6XZF7 1577 aa24.25■■□□□ 1.47
CCM2-217ENST00000492883 CUX1P39880 1505 aa24.16■■□□□ 1.46
CCM2-217ENST00000492883 IFT140Q96RY7 1462 aa24.15■■□□□ 1.46
CCM2-217ENST00000492883 WRNQ14191 1432 aaPredicted RBP eCLIP24.12■■□□□ 1.45
CCM2-217ENST00000492883 POLA1P09884 1462 aaPredicted RBP24.12■■□□□ 1.45
CCM2-217ENST00000492883 SOGA1O94964 1423 aa24.1■■□□□ 1.45
CCM2-217ENST00000492883 FGD5Q6ZNL6 1462 aa24.09■■□□□ 1.45
CCM2-217ENST00000492883 RAD54L2Q9Y4B4 1467 aa24.06■■□□□ 1.44
CCM2-217ENST00000492883 ZNF608Q9ULD9 1512 aaPredicted RBP24.03■■□□□ 1.44
CCM2-217ENST00000492883 TARBP1Q13395 1621 aaKnown RBP23.96■■□□□ 1.43
CCM2-217ENST00000492883 AQRO60306 1485 aaKnown RBP eCLIP23.96■■□□□ 1.431e-6■■■■■ 33.8
CCM2-217ENST00000492883 TDRD9Q8NDG6 1382 aaKnown RBP23.96■■□□□ 1.43
CCM2-217ENST00000492883 SYNJ1O43426 1573 aa23.95■■□□□ 1.43
CCM2-217ENST00000492883 TOP2BQ02880 1626 aa23.95■■□□□ 1.42
CCM2-217ENST00000492883 BIVM-ERCC5R4GMW8 1640 aa23.9■■□□□ 1.42
CCM2-217ENST00000492883 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
CCM2-217ENST00000492883 EIF4G3O43432 1585 aaKnown RBP23.85■■□□□ 1.41
CCM2-217ENST00000492883 DNAJC5Q9H3Z4 198 aa23.81■■□□□ 1.4
CCM2-217ENST00000492883 GAPVD1Q14C86 1478 aa23.79■■□□□ 1.4
CCM2-217ENST00000492883 WDR97A6NE52 1622 aa23.77■■□□□ 1.4
CCM2-217ENST00000492883 FBLN2P98095 1184 aa23.76■■□□□ 1.39
CCM2-217ENST00000492883 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
CCM2-217ENST00000492883 TRIM41Q8WV44 630 aa23.76■■□□□ 1.39
CCM2-217ENST00000492883 GRIN2BQ13224 1484 aa23.75■■□□□ 1.39
CCM2-217ENST00000492883 SNAPC4Q5SXM2 1469 aa23.69■■□□□ 1.38
CCM2-217ENST00000492883 CHMP7Q8WUX9 453 aaPredicted RBP23.69■■□□□ 1.38
CCM2-217ENST00000492883 ABCA5Q8WWZ7 1642 aa23.66■■□□□ 1.38
CCM2-217ENST00000492883 MAGI1Q96QZ7 1491 aaPredicted RBP23.65■■□□□ 1.38
CCM2-217ENST00000492883 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
CCM2-217ENST00000492883 SYNJ2O15056 1496 aa23.57■■□□□ 1.36
CCM2-217ENST00000492883 PBRM1Q86U86 1689 aa23.55■■□□□ 1.36
CCM2-217ENST00000492883 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
CCM2-217ENST00000492883 IGF1RP08069 1367 aa23.52■■□□□ 1.36
CCM2-217ENST00000492883 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
CCM2-217ENST00000492883 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
CCM2-217ENST00000492883 CHD1O14646 1710 aa23.47■■□□□ 1.35
CCM2-217ENST00000492883 ADAMTS12P58397 1594 aa23.44■■□□□ 1.34
CCM2-217ENST00000492883 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
CCM2-217ENST00000492883 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
CCM2-217ENST00000492883 CARMIL1Q5VZK9 1371 aa23.4■■□□□ 1.34
CCM2-217ENST00000492883 NUP160Q12769 1436 aa23.32■■□□□ 1.32
CCM2-217ENST00000492883 CUL7Q14999 1698 aa23.3■■□□□ 1.32
CCM2-217ENST00000492883 FAM9AQ8IZU1 332 aaPredicted RBP23.29■■□□□ 1.32
CCM2-217ENST00000492883 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
CCM2-217ENST00000492883 CLASP1Q7Z460 1538 aa23.28■■□□□ 1.32
CCM2-217ENST00000492883 CEP170Q5SW79 1584 aa23.26■■□□□ 1.31
CCM2-217ENST00000492883 EEA1Q15075 1411 aa23.24■■□□□ 1.31
CCM2-217ENST00000492883 RAPGEF2Q9Y4G8 1499 aa23.24■■□□□ 1.31
CCM2-217ENST00000492883 ARHGEF11O15085 1522 aa23.23■■□□□ 1.31
CCM2-217ENST00000492883 JPH4Q96JJ6 628 aa23.21■■□□□ 1.31
CCM2-217ENST00000492883 CYB5RLQ6IPT4 315 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms