RNA–Protein interactions for RNA: ENST00000492190.5

LMNB1-206, Transcript of lamin B1, humanhuman

TSL 3

Gene LMNB1, Length 738 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-206ENST00000492190 NISCHQ9Y2I1 1504 aa43.27■■■■■ 4.52
LMNB1-206ENST00000492190 CCDC180Q9P1Z9 1646 aa38.49■■■■□ 3.75
LMNB1-206ENST00000492190 ABCC9O60706 1549 aa37.64■■■■□ 3.62
LMNB1-206ENST00000492190 RB1CC1Q8TDY2 1594 aa36.18■■■■□ 3.38
LMNB1-206ENST00000492190 NACADO15069 1562 aa36.13■■■■□ 3.37
LMNB1-206ENST00000492190 DCAF8L2P0C7V8 631 aa36.07■■■■□ 3.36
LMNB1-206ENST00000492190 ZCCHC6Q5VYS8 1495 aaKnown RBP36.05■■■■□ 3.36
LMNB1-206ENST00000492190 MYO15BQ96JP2 1530 aa35.9■■■■□ 3.34
LMNB1-206ENST00000492190 DCAF1Q9Y4B6 1507 aa35.77■■■■□ 3.32
LMNB1-206ENST00000492190 UNC13AQ9UPW8 1703 aa35.56■■■■□ 3.28
LMNB1-206ENST00000492190 BICRAQ9NZM4 1560 aa35.19■■■■□ 3.22
LMNB1-206ENST00000492190 PABPN1Q86U42 306 aaKnown RBP eCLIP35.16■■■■□ 3.22
LMNB1-206ENST00000492190 SCRIBQ14160 1630 aa35.13■■■■□ 3.21
LMNB1-206ENST00000492190 SHROOM4Q9ULL8 1493 aa34.65■■■■□ 3.14
LMNB1-206ENST00000492190 DNAJC5BQ9UF47 199 aa34.61■■■■□ 3.13
LMNB1-206ENST00000492190 EIF4G1Q04637 1599 aaKnown RBP34.19■■■■□ 3.06
LMNB1-206ENST00000492190 CC2D2AQ9P2K1 1620 aa34.08■■■■□ 3.05
LMNB1-206ENST00000492190 CECR2Q9BXF3 1484 aa33.79■■■■□ 3
LMNB1-206ENST00000492190 SMARCA4P51532 1647 aa33.61■■■□□ 2.97
LMNB1-206ENST00000492190 BAZ1AQ9NRL2 1556 aaPredicted RBP33.5■■■□□ 2.95
LMNB1-206ENST00000492190 ATAD2BQ9ULI0 1458 aa33.38■■■□□ 2.93
LMNB1-206ENST00000492190 MROH2BQ7Z745 1585 aa33.38■■■□□ 2.93
LMNB1-206ENST00000492190 NCAPD3P42695 1498 aa33.34■■■□□ 2.93
LMNB1-206ENST00000492190 SMARCA2P51531 1590 aa33.3■■■□□ 2.92
LMNB1-206ENST00000492190 PEG3Q9GZU2 1588 aa33.26■■■□□ 2.91
LMNB1-206ENST00000492190 HMGXB3Q12766 1538 aa33.19■■■□□ 2.9
LMNB1-206ENST00000492190 BAZ1BQ9UIG0 1483 aaKnown RBP33.08■■■□□ 2.89
LMNB1-206ENST00000492190 WIZO95785 1651 aa33.06■■■□□ 2.88
LMNB1-206ENST00000492190 RSF1Q96T23 1441 aaPredicted RBP32.96■■■□□ 2.87
LMNB1-206ENST00000492190 TOP2AP11388 1531 aaKnown RBP32.63■■■□□ 2.81
LMNB1-206ENST00000492190 NESP48681 1621 aa32.62■■■□□ 2.81
LMNB1-206ENST00000492190 LAMC3Q9Y6N6 1575 aa32.47■■■□□ 2.79
LMNB1-206ENST00000492190 ERCC6Q03468 1493 aa32.36■■■□□ 2.77
LMNB1-206ENST00000492190 CADPSQ9ULU8 1353 aa32.35■■■□□ 2.77
LMNB1-206ENST00000492190 KIF21AQ7Z4S6 1674 aa32.28■■■□□ 2.76
LMNB1-206ENST00000492190 CCDC88BA6NC98 1476 aa32.26■■■□□ 2.75
LMNB1-206ENST00000492190 PDS5BQ9NTI5 1447 aa32.19■■■□□ 2.74
LMNB1-206ENST00000492190 CFTRP13569 1480 aa32.18■■■□□ 2.74
LMNB1-206ENST00000492190 THOC2Q8NI27 1593 aaKnown RBP32.13■■■□□ 2.73
LMNB1-206ENST00000492190 SUPT5HO00267 1087 aaKnown RBP32.08■■■□□ 2.73
LMNB1-206ENST00000492190 PRDM2Q13029 1718 aa32.06■■■□□ 2.72
LMNB1-206ENST00000492190 CUX2O14529 1486 aa32.04■■■□□ 2.72
LMNB1-206ENST00000492190 FANCD2Q9BXW9 1451 aa32■■■□□ 2.71
LMNB1-206ENST00000492190 CEP164Q9UPV0 1460 aa31.94■■■□□ 2.7
LMNB1-206ENST00000492190 MRC2Q9UBG0 1479 aa31.91■■■□□ 2.7
LMNB1-206ENST00000492190 WDR62O43379 1518 aa31.83■■■□□ 2.69
LMNB1-206ENST00000492190 URB2Q14146 1524 aaKnown RBP31.74■■■□□ 2.67
LMNB1-206ENST00000492190 TOPBP1Q92547 1522 aa31.52■■■□□ 2.64
LMNB1-206ENST00000492190 DNMBPQ6XZF7 1577 aa31.47■■■□□ 2.63
LMNB1-206ENST00000492190 ABCC8Q09428 1581 aa31.43■■■□□ 2.62
LMNB1-206ENST00000492190 CUX1P39880 1505 aa31.31■■■□□ 2.6
LMNB1-206ENST00000492190 IFT140Q96RY7 1462 aa31.26■■■□□ 2.59
LMNB1-206ENST00000492190 POLA1P09884 1462 aaPredicted RBP31.25■■■□□ 2.59
LMNB1-206ENST00000492190 TARBP1Q13395 1621 aaKnown RBP31.23■■■□□ 2.59
LMNB1-206ENST00000492190 ZNF608Q9ULD9 1512 aaPredicted RBP31.2■■■□□ 2.59
LMNB1-206ENST00000492190 FGD5Q6ZNL6 1462 aa31.17■■■□□ 2.58
LMNB1-206ENST00000492190 RAD54L2Q9Y4B4 1467 aa31.14■■■□□ 2.57
LMNB1-206ENST00000492190 EIF4G3O43432 1585 aaKnown RBP31.08■■■□□ 2.57
LMNB1-206ENST00000492190 SOGA1O94964 1423 aa31.07■■■□□ 2.57
LMNB1-206ENST00000492190 DNAJC5Q9H3Z4 198 aa31.07■■■□□ 2.56
LMNB1-206ENST00000492190 BIVM-ERCC5R4GMW8 1640 aa31.06■■■□□ 2.56
LMNB1-206ENST00000492190 SYNJ1O43426 1573 aa31.05■■■□□ 2.56
LMNB1-206ENST00000492190 WRNQ14191 1432 aaPredicted RBP eCLIP31.04■■■□□ 2.56
LMNB1-206ENST00000492190 TOP2BQ02880 1626 aa31.02■■■□□ 2.56
LMNB1-206ENST00000492190 AQRO60306 1485 aaKnown RBP eCLIP31.01■■■□□ 2.553e-7■■■■■ 39.8
LMNB1-206ENST00000492190 WDR97A6NE52 1622 aa31■■■□□ 2.55
LMNB1-206ENST00000492190 TDRD9Q8NDG6 1382 aaKnown RBP30.92■■■□□ 2.54
LMNB1-206ENST00000492190 ABCA10Q8WWZ4 1543 aa30.85■■■□□ 2.53
LMNB1-206ENST00000492190 ABCA5Q8WWZ7 1642 aa30.78■■■□□ 2.52
LMNB1-206ENST00000492190 PBRM1Q86U86 1689 aa30.77■■■□□ 2.52
LMNB1-206ENST00000492190 CHD1O14646 1710 aa30.76■■■□□ 2.51
LMNB1-206ENST00000492190 GAPVD1Q14C86 1478 aa30.73■■■□□ 2.51
LMNB1-206ENST00000492190 GRIN2BQ13224 1484 aa30.71■■■□□ 2.51
LMNB1-206ENST00000492190 SNAPC4Q5SXM2 1469 aa30.7■■■□□ 2.51
LMNB1-206ENST00000492190 OSCARQ8IYS5 282 aa30.68■■■□□ 2.5
LMNB1-206ENST00000492190 MAGI1Q96QZ7 1491 aaPredicted RBP30.63■■■□□ 2.49
LMNB1-206ENST00000492190 FBLN2P98095 1184 aa30.55■■■□□ 2.48
LMNB1-206ENST00000492190 SYNJ2O15056 1496 aa30.51■■■□□ 2.48
LMNB1-206ENST00000492190 ADAMTS12P58397 1594 aa30.48■■■□□ 2.47
LMNB1-206ENST00000492190 ERICH3Q5RHP9 1530 aa30.47■■■□□ 2.47
LMNB1-206ENST00000492190 CHMP7Q8WUX9 453 aaPredicted RBP30.45■■■□□ 2.47
LMNB1-206ENST00000492190 KIF27Q86VH2 1401 aa30.36■■■□□ 2.45
LMNB1-206ENST00000492190 CLASP1Q7Z460 1538 aa30.36■■■□□ 2.45
LMNB1-206ENST00000492190 FHAD1B1AJZ9 1412 aa30.35■■■□□ 2.45
LMNB1-206ENST00000492190 GRIN2AQ12879 1464 aa30.34■■■□□ 2.45
LMNB1-206ENST00000492190 RIMBP3CA6NJZ7 1639 aa30.32■■■□□ 2.44
LMNB1-206ENST00000492190 RIMBP3BA6NNM3 1639 aa30.32■■■□□ 2.44
LMNB1-206ENST00000492190 RIMBP3Q9UFD9 1639 aa30.32■■■□□ 2.44
LMNB1-206ENST00000492190 IGF1RP08069 1367 aa30.29■■■□□ 2.44
LMNB1-206ENST00000492190 ARHGEF11O15085 1522 aa30.27■■■□□ 2.44
LMNB1-206ENST00000492190 TRIM41Q8WV44 630 aa30.26■■■□□ 2.43
LMNB1-206ENST00000492190 CEP170Q5SW79 1584 aa30.24■■■□□ 2.43
LMNB1-206ENST00000492190 CUL7Q14999 1698 aa30.22■■■□□ 2.43
LMNB1-206ENST00000492190 RUSC2Q8N2Y8 1516 aa30.22■■■□□ 2.43
LMNB1-206ENST00000492190 NUP160Q12769 1436 aa30.22■■■□□ 2.43
LMNB1-206ENST00000492190 CARMIL1Q5VZK9 1371 aa30.08■■■□□ 2.41
LMNB1-206ENST00000492190 ARAP1Q96P48 1450 aa30.05■■■□□ 2.4
LMNB1-206ENST00000492190 SHROOM2Q13796 1616 aa30.04■■■□□ 2.4
LMNB1-206ENST00000492190 ERCC6L2Q5T890 1561 aa29.99■■■□□ 2.39
LMNB1-206ENST00000492190 CHIC1Q5VXU3 224 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 190 ms