RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 NISCHQ9Y2I1 1504 aa21.05■□□□□ 0.96
SMARCB1-207ENST00000491967 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
SMARCB1-207ENST00000491967 ABCC9O60706 1549 aa18.66■□□□□ 0.58
SMARCB1-207ENST00000491967 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
SMARCB1-207ENST00000491967 NACADO15069 1562 aa17.81■□□□□ 0.44
SMARCB1-207ENST00000491967 MYO15BQ96JP2 1530 aa17.67■□□□□ 0.42
SMARCB1-207ENST00000491967 DCAF8L2P0C7V8 631 aa17.56■□□□□ 0.4
SMARCB1-207ENST00000491967 DNAJC5BQ9UF47 199 aa17.51■□□□□ 0.39
SMARCB1-207ENST00000491967 UNC13AQ9UPW8 1703 aa17.49■□□□□ 0.39
SMARCB1-207ENST00000491967 ZCCHC6Q5VYS8 1495 aaKnown RBP17.46■□□□□ 0.39
SMARCB1-207ENST00000491967 DCAF1Q9Y4B6 1507 aa17.46■□□□□ 0.39
SMARCB1-207ENST00000491967 BICRAQ9NZM4 1560 aa17.4■□□□□ 0.38
SMARCB1-207ENST00000491967 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
SMARCB1-207ENST00000491967 SHROOM4Q9ULL8 1493 aa17.19■□□□□ 0.34
SMARCB1-207ENST00000491967 SCRIBQ14160 1630 aa17.08■□□□□ 0.32
SMARCB1-207ENST00000491967 CC2D2AQ9P2K1 1620 aa16.92■□□□□ 0.3
SMARCB1-207ENST00000491967 EIF4G1Q04637 1599 aaKnown RBP16.91■□□□□ 0.3
SMARCB1-207ENST00000491967 CECR2Q9BXF3 1484 aa16.83■□□□□ 0.28
SMARCB1-207ENST00000491967 NCAPD3P42695 1498 aa16.47■□□□□ 0.23
SMARCB1-207ENST00000491967 ATAD2BQ9ULI0 1458 aa16.39■□□□□ 0.21
SMARCB1-207ENST00000491967 SMARCA4P51532 1647 aa16.37■□□□□ 0.21
SMARCB1-207ENST00000491967 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
SMARCB1-207ENST00000491967 HMGXB3Q12766 1538 aa16.32■□□□□ 0.2
SMARCB1-207ENST00000491967 BAZ1AQ9NRL2 1556 aaPredicted RBP16.31■□□□□ 0.2
SMARCB1-207ENST00000491967 PEG3Q9GZU2 1588 aa16.29■□□□□ 0.2
SMARCB1-207ENST00000491967 DNAJC5Q9H3Z4 198 aa16.26■□□□□ 0.19
SMARCB1-207ENST00000491967 MROH2BQ7Z745 1585 aa16.2■□□□□ 0.18
SMARCB1-207ENST00000491967 BAZ1BQ9UIG0 1483 aaKnown RBP16.18■□□□□ 0.18
SMARCB1-207ENST00000491967 CUX2O14529 1486 aa16.11■□□□□ 0.17
SMARCB1-207ENST00000491967 NESP48681 1621 aa16.09■□□□□ 0.17
SMARCB1-207ENST00000491967 ERCC6Q03468 1493 aa16.08■□□□□ 0.16
SMARCB1-207ENST00000491967 LAMC3Q9Y6N6 1575 aa16.03■□□□□ 0.16
SMARCB1-207ENST00000491967 WIZO95785 1651 aa15.99■□□□□ 0.15
SMARCB1-207ENST00000491967 THOC2Q8NI27 1593 aaKnown RBP15.93■□□□□ 0.14
SMARCB1-207ENST00000491967 CADPSQ9ULU8 1353 aa15.93■□□□□ 0.14
SMARCB1-207ENST00000491967 RSF1Q96T23 1441 aaPredicted RBP15.93■□□□□ 0.14
SMARCB1-207ENST00000491967 PDS5BQ9NTI5 1447 aa15.92■□□□□ 0.14
SMARCB1-207ENST00000491967 KIF21AQ7Z4S6 1674 aa15.88■□□□□ 0.13
SMARCB1-207ENST00000491967 TOP2AP11388 1531 aaKnown RBP15.81■□□□□ 0.12
SMARCB1-207ENST00000491967 CFTRP13569 1480 aa15.79■□□□□ 0.12
SMARCB1-207ENST00000491967 MRC2Q9UBG0 1479 aa15.77■□□□□ 0.11
SMARCB1-207ENST00000491967 WDR62O43379 1518 aa15.75■□□□□ 0.11
SMARCB1-207ENST00000491967 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.1
SMARCB1-207ENST00000491967 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.1
SMARCB1-207ENST00000491967 CCDC88BA6NC98 1476 aa15.64■□□□□ 0.09
SMARCB1-207ENST00000491967 PRDM2Q13029 1718 aa15.61■□□□□ 0.09
SMARCB1-207ENST00000491967 URB2Q14146 1524 aaKnown RBP15.59■□□□□ 0.09
SMARCB1-207ENST00000491967 ABCC8Q09428 1581 aa15.45■□□□□ 0.06
SMARCB1-207ENST00000491967 TOPBP1Q92547 1522 aa15.44■□□□□ 0.06
SMARCB1-207ENST00000491967 IFT140Q96RY7 1462 aa15.41■□□□□ 0.06
SMARCB1-207ENST00000491967 DNMBPQ6XZF7 1577 aa15.39■□□□□ 0.05
SMARCB1-207ENST00000491967 OSCARQ8IYS5 282 aa15.38■□□□□ 0.05
SMARCB1-207ENST00000491967 ZNF608Q9ULD9 1512 aaPredicted RBP15.38■□□□□ 0.05
SMARCB1-207ENST00000491967 TARBP1Q13395 1621 aaKnown RBP15.32■□□□□ 0.04
SMARCB1-207ENST00000491967 POLA1P09884 1462 aaPredicted RBP15.28■□□□□ 0.04
SMARCB1-207ENST00000491967 TRIM41Q8WV44 630 aa15.27■□□□□ 0.04
SMARCB1-207ENST00000491967 EIF4G3O43432 1585 aaKnown RBP15.27■□□□□ 0.03
SMARCB1-207ENST00000491967 AQRO60306 1485 aaKnown RBP eCLIP15.24■□□□□ 0.03
SMARCB1-207ENST00000491967 CUX1P39880 1505 aa15.22■□□□□ 0.03
SMARCB1-207ENST00000491967 SOGA1O94964 1423 aa15.2■□□□□ 0.02
SMARCB1-207ENST00000491967 RAD54L2Q9Y4B4 1467 aa15.2■□□□□ 0.02
SMARCB1-207ENST00000491967 WDR97A6NE52 1622 aa15.19■□□□□ 0.02
SMARCB1-207ENST00000491967 FGD5Q6ZNL6 1462 aa15.18■□□□□ 0.02
SMARCB1-207ENST00000491967 TDRD9Q8NDG6 1382 aaKnown RBP15.15■□□□□ 0.02
SMARCB1-207ENST00000491967 SUPT5HO00267 1087 aaKnown RBP15.15■□□□□ 0.02
SMARCB1-207ENST00000491967 CHD1O14646 1710 aa15.14■□□□□ 0.01
SMARCB1-207ENST00000491967 RIMBP3CA6NJZ7 1639 aa15.14■□□□□ 0.01
SMARCB1-207ENST00000491967 RIMBP3BA6NNM3 1639 aa15.14■□□□□ 0.01
SMARCB1-207ENST00000491967 RIMBP3Q9UFD9 1639 aa15.14■□□□□ 0.01
SMARCB1-207ENST00000491967 ARHGEF11O15085 1522 aa15.12■□□□□ 0.01
SMARCB1-207ENST00000491967 MAGI1Q96QZ7 1491 aaPredicted RBP15.08■□□□□ 0
SMARCB1-207ENST00000491967 GRIN2BQ13224 1484 aa15.07■□□□□ 0
SMARCB1-207ENST00000491967 SNAPC4Q5SXM2 1469 aa15.06■□□□□ 0
SMARCB1-207ENST00000491967 ABCA10Q8WWZ4 1543 aa15.06■□□□□ 0
SMARCB1-207ENST00000491967 GAPVD1Q14C86 1478 aa15.03■□□□□ -0
SMARCB1-207ENST00000491967 FBLN2P98095 1184 aa15.02■□□□□ -0
SMARCB1-207ENST00000491967 ABCA5Q8WWZ7 1642 aa15.02□□□□□ -0.01
SMARCB1-207ENST00000491967 CLASP1Q7Z460 1538 aa15.02□□□□□ -0.01
SMARCB1-207ENST00000491967 SYNJ2O15056 1496 aa15.01□□□□□ -0.01
SMARCB1-207ENST00000491967 TOP2BQ02880 1626 aa15.01□□□□□ -0.01
SMARCB1-207ENST00000491967 BIVM-ERCC5R4GMW8 1640 aa15.01□□□□□ -0.01
SMARCB1-207ENST00000491967 PBRM1Q86U86 1689 aa15□□□□□ -0.01
SMARCB1-207ENST00000491967 CHMP7Q8WUX9 453 aaPredicted RBP14.99□□□□□ -0.01
SMARCB1-207ENST00000491967 WRNQ14191 1432 aaPredicted RBP eCLIP14.99□□□□□ -0.01
SMARCB1-207ENST00000491967 ARAP1Q96P48 1450 aa14.98□□□□□ -0.01
SMARCB1-207ENST00000491967 SYNJ1O43426 1573 aa14.97□□□□□ -0.01
SMARCB1-207ENST00000491967 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
SMARCB1-207ENST00000491967 GRIN2AQ12879 1464 aa14.88□□□□□ -0.03
SMARCB1-207ENST00000491967 ERICH3Q5RHP9 1530 aa14.87□□□□□ -0.03
SMARCB1-207ENST00000491967 ADAMTS12P58397 1594 aa14.87□□□□□ -0.03
SMARCB1-207ENST00000491967 NUP160Q12769 1436 aa14.86□□□□□ -0.03
SMARCB1-207ENST00000491967 FHAD1B1AJZ9 1412 aa14.85□□□□□ -0.03
SMARCB1-207ENST00000491967 CEP170Q5SW79 1584 aa14.81□□□□□ -0.04
SMARCB1-207ENST00000491967 SHROOM2Q13796 1616 aa14.8□□□□□ -0.04
SMARCB1-207ENST00000491967 ERCC6L2Q5T890 1561 aa14.76□□□□□ -0.05
SMARCB1-207ENST00000491967 IGF1RP08069 1367 aa14.73□□□□□ -0.05
SMARCB1-207ENST00000491967 TRHP20396 242 aaPredicted RBP14.69□□□□□ -0.06
SMARCB1-207ENST00000491967 KIF27Q86VH2 1401 aa14.68□□□□□ -0.06
SMARCB1-207ENST00000491967 JPH4Q96JJ6 628 aa14.68□□□□□ -0.06
SMARCB1-207ENST00000491967 RUSC2Q8N2Y8 1516 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms