RNA–Protein interactions for RNA: ENST00000491395.5

APP-216, Transcript of amyloid beta precursor protein, humanhuman

TSL 2

Gene APP, Length 619 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-216ENST00000491395 NISCHQ9Y2I1 1504 aa20.57■□□□□ 0.88
APP-216ENST00000491395 ABCC9O60706 1549 aa18.39■□□□□ 0.54
APP-216ENST00000491395 CCDC180Q9P1Z9 1646 aa18.3■□□□□ 0.52
APP-216ENST00000491395 DCAF8L2P0C7V8 631 aa17.47■□□□□ 0.39
APP-216ENST00000491395 RB1CC1Q8TDY2 1594 aa17.45■□□□□ 0.38
APP-216ENST00000491395 NACADO15069 1562 aa17.36■□□□□ 0.37
APP-216ENST00000491395 DNAJC5BQ9UF47 199 aa17.29■□□□□ 0.36
APP-216ENST00000491395 PABPN1Q86U42 306 aaKnown RBP eCLIP17.23■□□□□ 0.35
APP-216ENST00000491395 MYO15BQ96JP2 1530 aa17.14■□□□□ 0.33
APP-216ENST00000491395 ZCCHC6Q5VYS8 1495 aaKnown RBP17.04■□□□□ 0.32
APP-216ENST00000491395 BICRAQ9NZM4 1560 aa16.97■□□□□ 0.31
APP-216ENST00000491395 UNC13AQ9UPW8 1703 aa16.96■□□□□ 0.31
APP-216ENST00000491395 DCAF1Q9Y4B6 1507 aa16.96■□□□□ 0.3
APP-216ENST00000491395 SCRIBQ14160 1630 aa16.77■□□□□ 0.27
APP-216ENST00000491395 SHROOM4Q9ULL8 1493 aa16.7■□□□□ 0.26
APP-216ENST00000491395 CECR2Q9BXF3 1484 aa16.55■□□□□ 0.24
APP-216ENST00000491395 CC2D2AQ9P2K1 1620 aa16.55■□□□□ 0.24
APP-216ENST00000491395 EIF4G1Q04637 1599 aaKnown RBP16.54■□□□□ 0.24
APP-216ENST00000491395 NCAPD3P42695 1498 aa16.09■□□□□ 0.17
APP-216ENST00000491395 ATAD2BQ9ULI0 1458 aa16.04■□□□□ 0.16
APP-216ENST00000491395 SMARCA4P51532 1647 aa15.98■□□□□ 0.15
APP-216ENST00000491395 SMARCA2P51531 1590 aa15.95■□□□□ 0.14
APP-216ENST00000491395 BAZ1AQ9NRL2 1556 aaPredicted RBP15.92■□□□□ 0.14
APP-216ENST00000491395 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
APP-216ENST00000491395 BAZ1BQ9UIG0 1483 aaKnown RBP15.88■□□□□ 0.13
APP-216ENST00000491395 MROH2BQ7Z745 1585 aa15.87■□□□□ 0.13
APP-216ENST00000491395 ERCC6Q03468 1493 aa15.86■□□□□ 0.13
APP-216ENST00000491395 NESP48681 1621 aa15.83■□□□□ 0.12
APP-216ENST00000491395 PEG3Q9GZU2 1588 aa15.82■□□□□ 0.12
APP-216ENST00000491395 DNAJC5Q9H3Z4 198 aa15.79■□□□□ 0.12
APP-216ENST00000491395 CUX2O14529 1486 aa15.78■□□□□ 0.12
APP-216ENST00000491395 LAMC3Q9Y6N6 1575 aa15.63■□□□□ 0.09
APP-216ENST00000491395 WIZO95785 1651 aa15.63■□□□□ 0.09
APP-216ENST00000491395 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
APP-216ENST00000491395 PDS5BQ9NTI5 1447 aa15.62■□□□□ 0.09
APP-216ENST00000491395 RSF1Q96T23 1441 aaPredicted RBP15.6■□□□□ 0.09
APP-216ENST00000491395 THOC2Q8NI27 1593 aaKnown RBP15.55■□□□□ 0.08
APP-216ENST00000491395 KIF21AQ7Z4S6 1674 aa15.5■□□□□ 0.07
APP-216ENST00000491395 MRC2Q9UBG0 1479 aa15.46■□□□□ 0.07
APP-216ENST00000491395 TOP2AP11388 1531 aaKnown RBP15.44■□□□□ 0.06
APP-216ENST00000491395 CFTRP13569 1480 aa15.43■□□□□ 0.06
APP-216ENST00000491395 FANCD2Q9BXW9 1451 aa15.42■□□□□ 0.06
APP-216ENST00000491395 CEP164Q9UPV0 1460 aa15.4■□□□□ 0.06
APP-216ENST00000491395 WDR62O43379 1518 aa15.38■□□□□ 0.05
APP-216ENST00000491395 CCDC88BA6NC98 1476 aa15.33■□□□□ 0.04
APP-216ENST00000491395 URB2Q14146 1524 aaKnown RBP15.28■□□□□ 0.04
APP-216ENST00000491395 OSCARQ8IYS5 282 aa15.16■□□□□ 0.02
APP-216ENST00000491395 TRIM41Q8WV44 630 aa15.15■□□□□ 0.02
APP-216ENST00000491395 TOPBP1Q92547 1522 aa15.12■□□□□ 0.01
APP-216ENST00000491395 IFT140Q96RY7 1462 aa15.11■□□□□ 0.01
APP-216ENST00000491395 ZNF608Q9ULD9 1512 aaPredicted RBP15.11■□□□□ 0.01
APP-216ENST00000491395 PRDM2Q13029 1718 aa15.09■□□□□ 0.01
APP-216ENST00000491395 ABCC8Q09428 1581 aa15.07■□□□□ 0
APP-216ENST00000491395 SUPT5HO00267 1087 aaKnown RBP15.04■□□□□ -0
APP-216ENST00000491395 DNMBPQ6XZF7 1577 aa15.03■□□□□ -0
APP-216ENST00000491395 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.01
APP-216ENST00000491395 POLA1P09884 1462 aaPredicted RBP14.98□□□□□ -0.01
APP-216ENST00000491395 RAD54L2Q9Y4B4 1467 aa14.96□□□□□ -0.01
APP-216ENST00000491395 SOGA1O94964 1423 aa14.95□□□□□ -0.02
APP-216ENST00000491395 TDRD9Q8NDG6 1382 aaKnown RBP14.95□□□□□ -0.02
APP-216ENST00000491395 TARBP1Q13395 1621 aaKnown RBP14.94□□□□□ -0.02
APP-216ENST00000491395 EIF4G3O43432 1585 aaKnown RBP14.94□□□□□ -0.02
APP-216ENST00000491395 FBLN2P98095 1184 aa14.93□□□□□ -0.02
APP-216ENST00000491395 FGD5Q6ZNL6 1462 aa14.89□□□□□ -0.03
APP-216ENST00000491395 CUX1P39880 1505 aa14.88□□□□□ -0.03
APP-216ENST00000491395 ARHGEF11O15085 1522 aa14.84□□□□□ -0.03
APP-216ENST00000491395 RIMBP3CA6NJZ7 1639 aa14.84□□□□□ -0.03
APP-216ENST00000491395 RIMBP3BA6NNM3 1639 aa14.84□□□□□ -0.03
APP-216ENST00000491395 RIMBP3Q9UFD9 1639 aa14.84□□□□□ -0.03
APP-216ENST00000491395 CYB5RLQ6IPT4 315 aa14.82□□□□□ -0.04
APP-216ENST00000491395 CHMP7Q8WUX9 453 aaPredicted RBP14.82□□□□□ -0.04
APP-216ENST00000491395 SNAPC4Q5SXM2 1469 aa14.81□□□□□ -0.04
APP-216ENST00000491395 GRIN2BQ13224 1484 aa14.78□□□□□ -0.04
APP-216ENST00000491395 CHD1O14646 1710 aa14.78□□□□□ -0.04
APP-216ENST00000491395 WDR97A6NE52 1622 aa14.74□□□□□ -0.05
APP-216ENST00000491395 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
APP-216ENST00000491395 MAGI1Q96QZ7 1491 aaPredicted RBP14.74□□□□□ -0.05
APP-216ENST00000491395 ABCA10Q8WWZ4 1543 aa14.71□□□□□ -0.05
APP-216ENST00000491395 SYNJ2O15056 1496 aa14.71□□□□□ -0.05
APP-216ENST00000491395 ARAP1Q96P48 1450 aa14.71□□□□□ -0.05
APP-216ENST00000491395 WRNQ14191 1432 aaPredicted RBP eCLIP14.71□□□□□ -0.05
APP-216ENST00000491395 CLASP1Q7Z460 1538 aa14.67□□□□□ -0.06
APP-216ENST00000491395 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
APP-216ENST00000491395 ABCA5Q8WWZ7 1642 aa14.63□□□□□ -0.07
APP-216ENST00000491395 TRHP20396 242 aaPredicted RBP14.63□□□□□ -0.07
APP-216ENST00000491395 TOP2BQ02880 1626 aa14.63□□□□□ -0.07
APP-216ENST00000491395 PBRM1Q86U86 1689 aa14.6□□□□□ -0.07
APP-216ENST00000491395 BIVM-ERCC5R4GMW8 1640 aa14.59□□□□□ -0.07
APP-216ENST00000491395 GRIN2AQ12879 1464 aa14.58□□□□□ -0.08
APP-216ENST00000491395 FHAD1B1AJZ9 1412 aa14.56□□□□□ -0.08
APP-216ENST00000491395 NUP160Q12769 1436 aa14.54□□□□□ -0.08
APP-216ENST00000491395 ADAMTS12P58397 1594 aa14.53□□□□□ -0.08
APP-216ENST00000491395 ERICH3Q5RHP9 1530 aa14.51□□□□□ -0.09
APP-216ENST00000491395 CEP170Q5SW79 1584 aa14.5□□□□□ -0.09
APP-216ENST00000491395 ERCC6L2Q5T890 1561 aa14.49□□□□□ -0.09
APP-216ENST00000491395 JPH4Q96JJ6 628 aa14.46□□□□□ -0.09
APP-216ENST00000491395 IGF1RP08069 1367 aa14.45□□□□□ -0.1
APP-216ENST00000491395 PRG4Q92954 1404 aaPredicted RBP14.43□□□□□ -0.1
APP-216ENST00000491395 KIF27Q86VH2 1401 aa14.41□□□□□ -0.1
APP-216ENST00000491395 SHROOM2Q13796 1616 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms