RNA–Protein interactions for RNA: ENST00000491203.5

CNOT4-210, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 4

Gene CNOT4, Length 538 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-210ENST00000491203 AEBP2Q6ZN18 517 aaPredicted RBP27.56■■■□□ 2
CNOT4-210ENST00000491203 CHIC1Q5VXU3 224 aa26.27■■□□□ 1.8
CNOT4-210ENST00000491203 SENP3Q9H4L4 574 aaPredicted RBP23.29■■□□□ 1.32
CNOT4-210ENST00000491203 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
CNOT4-210ENST00000491203 FOXD1Q16676 465 aa21.8■■□□□ 1.08
CNOT4-210ENST00000491203 PLPPR3Q6T4P5 718 aa21■□□□□ 0.95
CNOT4-210ENST00000491203 PPP6R1Q9UPN7 881 aa20.6■□□□□ 0.89
CNOT4-210ENST00000491203 ADRA2BP18089 450 aa20.5■□□□□ 0.87
CNOT4-210ENST00000491203 PIAS4Q8N2W9 510 aaPredicted RBP20.33■□□□□ 0.85
CNOT4-210ENST00000491203 MSH5O43196 834 aa20.18■□□□□ 0.82
CNOT4-210ENST00000491203 NISCHQ9Y2I1 1504 aa19.98■□□□□ 0.79
CNOT4-210ENST00000491203 POTEDQ86YR6 584 aa19.46■□□□□ 0.71
CNOT4-210ENST00000491203 MAPK8IP2Q13387 824 aaPredicted RBP18.79■□□□□ 0.6
CNOT4-210ENST00000491203 DMRT2Q9Y5R5 561 aa18.56■□□□□ 0.56
CNOT4-210ENST00000491203 SCAF1Q9H7N4 1312 aaKnown RBP18.55■□□□□ 0.56
CNOT4-210ENST00000491203 PPP4R3CPQ6ZMV5 832 aa18.49■□□□□ 0.55
CNOT4-210ENST00000491203 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
CNOT4-210ENST00000491203 HOXD11P31277 338 aaPredicted RBP17.97■□□□□ 0.47
CNOT4-210ENST00000491203 RNF216Q9NWF9 866 aaPredicted RBP17.85■□□□□ 0.45
CNOT4-210ENST00000491203 NCBP3Q53F19 620 aaKnown RBP17.72■□□□□ 0.43
CNOT4-210ENST00000491203 DCAF8L1A6NGE4 600 aa17.69■□□□□ 0.42
CNOT4-210ENST00000491203 CCDC180Q9P1Z9 1646 aa17.63■□□□□ 0.41
CNOT4-210ENST00000491203 NPM3O75607 178 aaKnown RBP17.62■□□□□ 0.41
CNOT4-210ENST00000491203 KCNA4P22459 653 aa17.49■□□□□ 0.39
CNOT4-210ENST00000491203 RNF39Q9H2S5 420 aa17.33■□□□□ 0.36
CNOT4-210ENST00000491203 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
CNOT4-210ENST00000491203 CACNB1Q02641 598 aaPredicted RBP17.2■□□□□ 0.34
CNOT4-210ENST00000491203 ABCC9O60706 1549 aa17.03■□□□□ 0.32
CNOT4-210ENST00000491203 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.02■□□□□ 0.322e-6■■□□□ 11.9
CNOT4-210ENST00000491203 C1QBPQ07021 282 aaKnown RBP17.01■□□□□ 0.31
CNOT4-210ENST00000491203 SLC4A2P04920 1241 aa16.83■□□□□ 0.28
CNOT4-210ENST00000491203 U3KPZ7 1027 aaPredicted RBP16.82■□□□□ 0.28
CNOT4-210ENST00000491203 ZCCHC6Q5VYS8 1495 aaKnown RBP16.7■□□□□ 0.26
CNOT4-210ENST00000491203 DCAF8L2P0C7V8 631 aa16.64■□□□□ 0.25
CNOT4-210ENST00000491203 DCAF1Q9Y4B6 1507 aa16.54■□□□□ 0.24
CNOT4-210ENST00000491203 NACADO15069 1562 aa16.53■□□□□ 0.24
CNOT4-210ENST00000491203 SPINK5Q9NQ38 1064 aaPredicted RBP16.52■□□□□ 0.24
CNOT4-210ENST00000491203 MYO15BQ96JP2 1530 aa16.5■□□□□ 0.23
CNOT4-210ENST00000491203 RB1CC1Q8TDY2 1594 aa16.49■□□□□ 0.23
CNOT4-210ENST00000491203 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
CNOT4-210ENST00000491203 CAPN15O75808 1086 aa16.36■□□□□ 0.21
CNOT4-210ENST00000491203 DSG3P32926 999 aa16.31■□□□□ 0.2
CNOT4-210ENST00000491203 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.22■□□□□ 0.19
CNOT4-210ENST00000491203 HNRNPUL2Q1KMD3 747 aaKnown RBP16.22■□□□□ 0.19
CNOT4-210ENST00000491203 MYCNP04198 464 aaPredicted RBP16.21■□□□□ 0.19
CNOT4-210ENST00000491203 SAMD1Q6SPF0 538 aaPredicted RBP16.18■□□□□ 0.18
CNOT4-210ENST00000491203 TRHP20396 242 aaPredicted RBP16.17■□□□□ 0.18
CNOT4-210ENST00000491203 FOXD4L1Q9NU39 408 aa16.17■□□□□ 0.18
CNOT4-210ENST00000491203 ZBTB22O15209 634 aa16.16■□□□□ 0.18
CNOT4-210ENST00000491203 SCRIBQ14160 1630 aa16.13■□□□□ 0.17
CNOT4-210ENST00000491203 APLP2Q06481 763 aa16.13■□□□□ 0.17
CNOT4-210ENST00000491203 ZNF219Q9P2Y4 722 aaPredicted RBP16.1■□□□□ 0.17
CNOT4-210ENST00000491203 ABCB7O75027 752 aa16.07■□□□□ 0.16
CNOT4-210ENST00000491203 UNC13AQ9UPW8 1703 aa16.07■□□□□ 0.16
CNOT4-210ENST00000491203 SHROOM4Q9ULL8 1493 aa15.98■□□□□ 0.15
CNOT4-210ENST00000491203 PABPN1Q86U42 306 aaKnown RBP eCLIP15.98■□□□□ 0.15
CNOT4-210ENST00000491203 ATF5Q9Y2D1 282 aaPredicted RBP15.97■□□□□ 0.15
CNOT4-210ENST00000491203 BICRAQ9NZM4 1560 aa15.95■□□□□ 0.14
CNOT4-210ENST00000491203 POLA2Q14181 598 aa15.8■□□□□ 0.12
CNOT4-210ENST00000491203 ATXN8OSP0DMR3 200 aa15.63■□□□□ 0.09
CNOT4-210ENST00000491203 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
CNOT4-210ENST00000491203 CECR2Q9BXF3 1484 aa15.53■□□□□ 0.08
CNOT4-210ENST00000491203 EIF4G1Q04637 1599 aaKnown RBP15.53■□□□□ 0.08
CNOT4-210ENST00000491203 BAZ1AQ9NRL2 1556 aaPredicted RBP15.47■□□□□ 0.07
CNOT4-210ENST00000491203 SMARCA4P51532 1647 aa15.44■□□□□ 0.06
CNOT4-210ENST00000491203 RBM42Q9BTD8 480 aaKnown RBP15.42■□□□□ 0.06
CNOT4-210ENST00000491203 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
CNOT4-210ENST00000491203 CC2D2AQ9P2K1 1620 aa15.39■□□□□ 0.05
CNOT4-210ENST00000491203 ZBTB12Q9Y330 459 aaPredicted RBP15.39■□□□□ 0.05
CNOT4-210ENST00000491203 EHMT2Q96KQ7 1210 aa15.38■□□□□ 0.05
CNOT4-210ENST00000491203 RSF1Q96T23 1441 aaPredicted RBP15.34■□□□□ 0.05
CNOT4-210ENST00000491203 OSCARQ8IYS5 282 aa15.32■□□□□ 0.04
CNOT4-210ENST00000491203 SMARCA2P51531 1590 aa15.3■□□□□ 0.04
CNOT4-210ENST00000491203 ATAD2BQ9ULI0 1458 aa15.3■□□□□ 0.04
CNOT4-210ENST00000491203 PEG3Q9GZU2 1588 aa15.27■□□□□ 0.03
CNOT4-210ENST00000491203 POTEHQ6S545 545 aa15.25■□□□□ 0.03
CNOT4-210ENST00000491203 NCAPD3P42695 1498 aa15.25■□□□□ 0.03
CNOT4-210ENST00000491203 MKRN4PQ13434 485 aaPredicted RBP15.24■□□□□ 0.03
CNOT4-210ENST00000491203 WIZO95785 1651 aa15.24■□□□□ 0.03
CNOT4-210ENST00000491203 BAZ1BQ9UIG0 1483 aaKnown RBP15.2■□□□□ 0.02
CNOT4-210ENST00000491203 HMGXB3Q12766 1538 aa15.19■□□□□ 0.02
CNOT4-210ENST00000491203 SUPT5HO00267 1087 aaKnown RBP15.18■□□□□ 0.02
CNOT4-210ENST00000491203 AKT1S1Q96B36 256 aa15.16■□□□□ 0.02
CNOT4-210ENST00000491203 TOP2AP11388 1531 aaKnown RBP15.12■□□□□ 0.01
CNOT4-210ENST00000491203 FBLN2P98095 1184 aa15.11■□□□□ 0.01
CNOT4-210ENST00000491203 CHRDL2Q6WN34 429 aa15.08■□□□□ 0
CNOT4-210ENST00000491203 REM2Q8IYK8 340 aaPredicted RBP15.07■□□□□ 0
CNOT4-210ENST00000491203 SPDYE2BA6NHP3 402 aa15□□□□□ -0.01
CNOT4-210ENST00000491203 SPDYE6P0CI01 402 aa15□□□□□ -0.01
CNOT4-210ENST00000491203 SPDYE2Q495Y8 402 aa15□□□□□ -0.01
CNOT4-210ENST00000491203 CCDC88BA6NC98 1476 aa14.94□□□□□ -0.02
CNOT4-210ENST00000491203 PITPNM1O00562 1244 aa14.93□□□□□ -0.02
CNOT4-210ENST00000491203 SSUH2Q9Y2M2 353 aa14.91□□□□□ -0.02
CNOT4-210ENST00000491203 ZNF692Q9BU19 519 aaPredicted RBP14.85□□□□□ -0.03
CNOT4-210ENST00000491203 CADPSQ9ULU8 1353 aa14.84□□□□□ -0.03
CNOT4-210ENST00000491203 PIP4P2Q8N4L2 257 aa14.81□□□□□ -0.04
CNOT4-210ENST00000491203 LAMC3Q9Y6N6 1575 aa14.8□□□□□ -0.04
CNOT4-210ENST00000491203 NESP48681 1621 aa14.8□□□□□ -0.04
CNOT4-210ENST00000491203 CFTRP13569 1480 aa14.79□□□□□ -0.04
CNOT4-210ENST00000491203 FXR2P51116 673 aaKnown RBP eCLIP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms