RNA–Protein interactions for RNA: ENST00000490814.6

BRD9-209, Transcript of bromodomain containing 9, humanhuman

TSL 1 (best)

Gene BRD9, Length 3,477 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD9-209ENST00000490814 KIF21AQ7Z4S6 1674 aa14.53□□□□□ -0.08
BRD9-209ENST00000490814 FGD5Q6ZNL6 1462 aa14.51□□□□□ -0.09
BRD9-209ENST00000490814 CUX2O14529 1486 aa14.51□□□□□ -0.09
BRD9-209ENST00000490814 P3H3Q8IVL6 736 aa14.5□□□□□ -0.09
BRD9-209ENST00000490814 TOPBP1Q92547 1522 aa14.5□□□□□ -0.09
BRD9-209ENST00000490814 EIF5BO60841 1220 aaKnown RBP14.49□□□□□ -0.09
BRD9-209ENST00000490814 CLSPNQ9HAW4 1339 aa14.48□□□□□ -0.09
BRD9-209ENST00000490814 CUX1P39880 1505 aa14.48□□□□□ -0.09
BRD9-209ENST00000490814 KIF21BO75037 1637 aa14.47□□□□□ -0.09
BRD9-209ENST00000490814 UBE2Q2Q8WVN8 375 aa14.47□□□□□ -0.09
BRD9-209ENST00000490814 DHX57Q6P158 1386 aaKnown RBP14.47□□□□□ -0.09
BRD9-209ENST00000490814 ZNF608Q9ULD9 1512 aaPredicted RBP14.45□□□□□ -0.1
BRD9-209ENST00000490814 POLA1P09884 1462 aaPredicted RBP14.45□□□□□ -0.1
BRD9-209ENST00000490814 FAM50AQ14320 339 aaKnown RBP14.45□□□□□ -0.1
BRD9-209ENST00000490814 ARID3CA6NKF2 412 aa14.44□□□□□ -0.1
BRD9-209ENST00000490814 FKBP8Q14318 412 aa14.41□□□□□ -0.1
BRD9-209ENST00000490814 KCNH8Q96L42 1107 aa14.41□□□□□ -0.1
BRD9-209ENST00000490814 HIRIP3Q9BW71 556 aaPredicted RBP14.39□□□□□ -0.11
BRD9-209ENST00000490814 DDX10Q13206 875 aaKnown RBP14.38□□□□□ -0.11
BRD9-209ENST00000490814 SALL2Q9Y467 1007 aaPredicted RBP14.36□□□□□ -0.11
BRD9-209ENST00000490814 KIF27Q86VH2 1401 aa14.36□□□□□ -0.11
BRD9-209ENST00000490814 CCNB3Q8WWL7 1395 aa14.36□□□□□ -0.11
BRD9-209ENST00000490814 NEFLP07196 543 aa14.35□□□□□ -0.11
BRD9-209ENST00000490814 SIN3AQ96ST3 1273 aa14.34□□□□□ -0.11
BRD9-209ENST00000490814 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
BRD9-209ENST00000490814 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
BRD9-209ENST00000490814 CCDC136Q96JN2 1154 aa14.33□□□□□ -0.12
BRD9-209ENST00000490814 GAPVD1Q14C86 1478 aa14.31□□□□□ -0.12
BRD9-209ENST00000490814 DAXXQ9UER7 740 aaPredicted RBP14.31□□□□□ -0.12
BRD9-209ENST00000490814 CARMIL1Q5VZK9 1371 aa14.3□□□□□ -0.12
BRD9-209ENST00000490814 OSCARQ8IYS5 282 aa14.29□□□□□ -0.12
BRD9-209ENST00000490814 RAB3GAP2Q9H2M9 1393 aa14.29□□□□□ -0.12
BRD9-209ENST00000490814 IFT140Q96RY7 1462 aa14.28□□□□□ -0.12
BRD9-209ENST00000490814 PRXQ9BXM0 1461 aa14.28□□□□□ -0.12
BRD9-209ENST00000490814 IGF1RP08069 1367 aa14.28□□□□□ -0.12
BRD9-209ENST00000490814 TOP2BQ02880 1626 aa14.28□□□□□ -0.12
BRD9-209ENST00000490814 MYT1LQ9UL68 1186 aa14.27□□□□□ -0.12
BRD9-209ENST00000490814 RBM19Q9Y4C8 960 aaKnown RBP14.27□□□□□ -0.12
BRD9-209ENST00000490814 TRIM52Q96A61 297 aa14.27□□□□□ -0.13
BRD9-209ENST00000490814 WDR62O43379 1518 aa14.26□□□□□ -0.13
BRD9-209ENST00000490814 THOC2Q8NI27 1593 aaKnown RBP14.25□□□□□ -0.13
BRD9-209ENST00000490814 DEKP35659 375 aaKnown RBP14.24□□□□□ -0.13
BRD9-209ENST00000490814 ERICH6BQ5W0A0 696 aa14.24□□□□□ -0.13
BRD9-209ENST00000490814 CYB5RLQ6IPT4 315 aa14.23□□□□□ -0.13
BRD9-209ENST00000490814 RRBP1Q9P2E9 1410 aaKnown RBP14.22□□□□□ -0.13
BRD9-209ENST00000490814 SNAPC4Q5SXM2 1469 aa14.22□□□□□ -0.13
BRD9-209ENST00000490814 ARHGAP35Q9NRY4 1499 aa14.21□□□□□ -0.13
BRD9-209ENST00000490814 ERICH3Q5RHP9 1530 aa14.21□□□□□ -0.13
BRD9-209ENST00000490814 ANP32CO43423 234 aa14.19□□□□□ -0.14
BRD9-209ENST00000490814 PKNOX2Q96KN3 472 aa14.18□□□□□ -0.14
BRD9-209ENST00000490814 GRIN2BQ13224 1484 aa14.18□□□□□ -0.14
BRD9-209ENST00000490814 SETD5Q9C0A6 1442 aa14.17□□□□□ -0.14
BRD9-209ENST00000490814 MSH5O43196 834 aa14.17□□□□□ -0.14
BRD9-209ENST00000490814 PLEKHG5O94827 1062 aa14.17□□□□□ -0.14
BRD9-209ENST00000490814 JPH4Q96JJ6 628 aa14.17□□□□□ -0.14
BRD9-209ENST00000490814 ABCA10Q8WWZ4 1543 aa14.16□□□□□ -0.14
BRD9-209ENST00000490814 PHLDB1Q86UU1 1377 aa14.14□□□□□ -0.15
BRD9-209ENST00000490814 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.13□□□□□ -0.15
BRD9-209ENST00000490814 PRDM2Q13029 1718 aa14.13□□□□□ -0.15
BRD9-209ENST00000490814 BIVM-ERCC5R4GMW8 1640 aa14.12□□□□□ -0.15
BRD9-209ENST00000490814 IRX6P78412 446 aaPredicted RBP14.11□□□□□ -0.15
BRD9-209ENST00000490814 TONSLQ96HA7 1378 aa14.1□□□□□ -0.15
BRD9-209ENST00000490814 EIF4G3O43432 1585 aaKnown RBP14.09□□□□□ -0.15
BRD9-209ENST00000490814 CNGB1Q14028 1251 aaPredicted RBP14.07□□□□□ -0.16
BRD9-209ENST00000490814 WDR97A6NE52 1622 aa14.07□□□□□ -0.16
BRD9-209ENST00000490814 TARBP1Q13395 1621 aaKnown RBP14.07□□□□□ -0.16
BRD9-209ENST00000490814 PODXL2Q9NZ53 605 aa14.07□□□□□ -0.16
BRD9-209ENST00000490814 CDK11AQ9UQ88 783 aaPredicted RBP14.07□□□□□ -0.16
BRD9-209ENST00000490814 FHAD1B1AJZ9 1412 aa14.07□□□□□ -0.16
BRD9-209ENST00000490814 FHOD3Q2V2M9 1422 aa14.07□□□□□ -0.16
BRD9-209ENST00000490814 PPP1R15AO75807 674 aaPredicted RBP14.06□□□□□ -0.16
BRD9-209ENST00000490814 MAPKBP1O60336 1514 aa14.06□□□□□ -0.16
BRD9-209ENST00000490814 LRRC9Q6ZRR7 1453 aa14.05□□□□□ -0.16
BRD9-209ENST00000490814 HNRNPUQ00839 825 aaKnown RBP eCLIP14.05□□□□□ -0.16
BRD9-209ENST00000490814 CHIC2Q9UKJ5 165 aa14.05□□□□□ -0.16
BRD9-209ENST00000490814 TIAM1Q13009 1591 aa14.03□□□□□ -0.16
BRD9-209ENST00000490814 TRHP20396 242 aaPredicted RBP14.02□□□□□ -0.16
BRD9-209ENST00000490814 MTUS2Q5JR59 1369 aa14.02□□□□□ -0.17
BRD9-209ENST00000490814 RRP7BPQ9NSQ0 103 aa14□□□□□ -0.17
BRD9-209ENST00000490814 SYNJ2O15056 1496 aa14□□□□□ -0.17
BRD9-209ENST00000490814 NPM1P06748 294 aaKnown RBP eCLIP14□□□□□ -0.17
BRD9-209ENST00000490814 FANCIQ9NVI1 1328 aa13.99□□□□□ -0.17
BRD9-209ENST00000490814 GRIN2AQ12879 1464 aa13.98□□□□□ -0.17
BRD9-209ENST00000490814 RTN4Q9NQC3 1192 aaKnown RBP13.98□□□□□ -0.17
BRD9-209ENST00000490814 CCER2I3L3R5 266 aa13.96□□□□□ -0.17
BRD9-209ENST00000490814 MAGI1Q96QZ7 1491 aaPredicted RBP13.96□□□□□ -0.17
BRD9-209ENST00000490814 PRG4Q92954 1404 aaPredicted RBP13.96□□□□□ -0.17
BRD9-209ENST00000490814 TIMELESSQ9UNS1 1208 aa13.96□□□□□ -0.18
BRD9-209ENST00000490814 POLR3GLQ9BT43 218 aa13.95□□□□□ -0.18
BRD9-209ENST00000490814 IL27Q8NEV9 243 aa13.94□□□□□ -0.18
BRD9-209ENST00000490814 FAM9BQ8IZU0 186 aa13.93□□□□□ -0.18
BRD9-209ENST00000490814 DNAJC5Q9H3Z4 198 aa13.92□□□□□ -0.18
BRD9-209ENST00000490814 NBR1Q14596 966 aa13.92□□□□□ -0.18
BRD9-209ENST00000490814 PCF11O94913 1555 aaKnown RBP13.92□□□□□ -0.18
BRD9-209ENST00000490814 ABCA5Q8WWZ7 1642 aa13.91□□□□□ -0.18
BRD9-209ENST00000490814 FOXD1Q16676 465 aa13.9□□□□□ -0.18
BRD9-209ENST00000490814 PTPRGP23470 1445 aa13.89□□□□□ -0.19
BRD9-209ENST00000490814 CCDC18Q5T9S5 1454 aa13.89□□□□□ -0.19
BRD9-209ENST00000490814 SENP3-EIF4A1A0A087X0R7 540 aa13.89□□□□□ -0.19
BRD9-209ENST00000490814 HSPA5P11021 654 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms