RNA–Protein interactions for RNA: ENST00000490814.6

BRD9-209, Transcript of bromodomain containing 9, humanhuman

TSL 1 (best)

Gene BRD9, Length 3,477 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD9-209ENST00000490814 SF3B1O75533 1304 aaKnown RBP eCLIP10.32□□□□□ -0.762e-6■■■■■ 133.5
BRD9-209ENST00000490814 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.22□□□□□ -0.612e-6■■■■■ 132.4
BRD9-209ENST00000490814 EIF4G2P78344 907 aaKnown RBP eCLIP13.85□□□□□ -0.194e-8■■■■■ 75.7
BRD9-209ENST00000490814 TARDBPQ13148 414 aaKnown RBP eCLIP9.98□□□□□ -0.811e-14■■■■■ 72.7
BRD9-209ENST00000490814 DKC1O60832 514 aaKnown RBP eCLIP10.5□□□□□ -0.732e-7■■■■■ 49.9
BRD9-209ENST00000490814 AATFQ9NY61 560 aaKnown RBP eCLIP11.31□□□□□ -0.62e-7■■■■■ 46.1
BRD9-209ENST00000490814 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.68□□□□□ -0.544e-8■■■■■ 42.2
BRD9-209ENST00000490814 TRA2AQ13595 282 aaKnown RBP eCLIP9.15□□□□□ -0.942e-8■■■■■ 37.7
BRD9-209ENST00000490814 AQRO60306 1485 aaKnown RBP eCLIP14.54□□□□□ -0.084e-7■■■■■ 37.4
BRD9-209ENST00000490814 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.46□□□□□ -0.736e-8■■■■■ 32.8
BRD9-209ENST00000490814 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.73□□□□□ -0.692e-6■■■■■ 32.6
BRD9-209ENST00000490814 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.96□□□□□ -0.982e-8■■■■■ 32.5
BRD9-209ENST00000490814 RBM22Q9NW64 420 aaKnown RBP eCLIP10.12□□□□□ -0.791e-14■■■■■ 31.6
BRD9-209ENST00000490814 ZRANB2O95218 330 aaKnown RBP eCLIP11.58□□□□□ -0.562e-6■■■■■ 31
BRD9-209ENST00000490814 AARSP49588 968 aaKnown RBP eCLIP11.23□□□□□ -0.611e-6■■■■■ 29.7
BRD9-209ENST00000490814 SF3B4Q15427 424 aaKnown RBP eCLIP10.34□□□□□ -0.752e-20■■■■■ 29
BRD9-209ENST00000490814 EFTUD2Q15029 972 aaKnown RBP eCLIP10.59□□□□□ -0.711e-7■■■■■ 28.9
BRD9-209ENST00000490814 ZNF622Q969S3 477 aaKnown RBP eCLIP12.2□□□□□ -0.463e-7■■■■□ 24.4
BRD9-209ENST00000490814 PTBP1P26599 531 aaKnown RBP eCLIP9.41□□□□□ -0.95e-6■■■■□ 24.3
BRD9-209ENST00000490814 SRSF1Q07955 248 aaKnown RBP eCLIP8.07□□□□□ -1.128e-7■■■■□ 23.2
BRD9-209ENST00000490814 GRSF1Q12849 480 aaKnown RBP eCLIP10.01□□□□□ -0.811e-8■■■■□ 23.1
BRD9-209ENST00000490814 PRPF4O43172 522 aaKnown RBP eCLIP10.54□□□□□ -0.721e-6■■■■□ 23
BRD9-209ENST00000490814 TIAL1Q01085 375 aaKnown RBP eCLIP9.88□□□□□ -0.832e-6■■■■□ 22.9
BRD9-209ENST00000490814 RBFOX2O43251 390 aaKnown RBP eCLIP8.62□□□□□ -1.034e-9■■■■□ 22.7
BRD9-209ENST00000490814 SF3A3Q12874 501 aaKnown RBP eCLIP11.16□□□□□ -0.623e-7■■■■□ 22.6
BRD9-209ENST00000490814 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.85□□□□□ -0.834e-7■■■■□ 22.2
BRD9-209ENST00000490814 FUSP35637 526 aaKnown RBP eCLIP7.02□□□□□ -1.291e-6■■■■□ 22.1
BRD9-209ENST00000490814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.47□□□□□ -0.574e-9■■■■□ 21.4
BRD9-209ENST00000490814 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.59□□□□□ -0.872e-7■■■■□ 21.2
BRD9-209ENST00000490814 HNRNPMP52272 730 aaKnown RBP eCLIP13.55□□□□□ -0.245e-7■■■■□ 21.2
BRD9-209ENST00000490814 SRSF7Q16629 238 aaKnown RBP eCLIP8.5□□□□□ -1.053e-7■■■■□ 20.9
BRD9-209ENST00000490814 SMNDC1O75940 238 aaKnown RBP eCLIP11.08□□□□□ -0.649e-7■■■■□ 19.6
BRD9-209ENST00000490814 NONOQ15233 471 aaKnown RBP eCLIP11.14□□□□□ -0.635e-7■■■□□ 19.1
BRD9-209ENST00000490814 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.27□□□□□ -1.082e-7■■■□□ 19.1
BRD9-209ENST00000490814 EWSR1Q01844 656 aaKnown RBP eCLIP8.77□□□□□ -1.018e-8■■■□□ 18.2
BRD9-209ENST00000490814 PABPC4Q13310 644 aaKnown RBP eCLIP11□□□□□ -0.654e-6■■■□□ 17.5
BRD9-209ENST00000490814 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.47□□□□□ -0.253e-7■■■□□ 17.2
BRD9-209ENST00000490814 CPSF6Q16630 551 aaKnown RBP eCLIP9.87□□□□□ -0.832e-7■■■□□ 16.2
BRD9-209ENST00000490814 RBM5P52756 815 aaKnown RBP eCLIP11.51□□□□□ -0.575e-8■■■□□ 16
BRD9-209ENST00000490814 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.91□□□□□ -0.662e-7■■■□□ 15.9
BRD9-209ENST00000490814 FTOQ9C0B1 505 aaKnown RBP eCLIP11.83□□□□□ -0.528e-6■■■□□ 15.4
BRD9-209ENST00000490814 FXR2P51116 673 aaKnown RBP eCLIP10.97□□□□□ -0.655e-6■■■□□ 14.9
BRD9-209ENST00000490814 DDX3XO00571 662 aaKnown RBP eCLIP10.89□□□□□ -0.676e-6■■□□□ 14.5
BRD9-209ENST00000490814 PPIGQ13427 754 aaKnown RBP eCLIP9.68□□□□□ -0.867e-7■■□□□ 14
BRD9-209ENST00000490814 GTF2F1P35269 517 aaKnown RBP eCLIP12.1□□□□□ -0.475e-8■■□□□ 13.4
BRD9-209ENST00000490814 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.92□□□□□ -0.662e-7■■□□□ 12.7
BRD9-209ENST00000490814 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.55□□□□□ -0.563e-7■■□□□ 12.5
BRD9-209ENST00000490814 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.72□□□□□ -0.212e-9■■□□□ 11.7
BRD9-209ENST00000490814 PUM1Q14671 1186 aaKnown RBP eCLIP9.53□□□□□ -0.884e-7■■□□□ 11.6
BRD9-209ENST00000490814 WRNQ14191 1432 aaPredicted RBP eCLIP14.87□□□□□ -0.037e-9■■□□□ 11.4
BRD9-209ENST00000490814 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.26□□□□□ -0.774e-6■■□□□ 11.4
BRD9-209ENST00000490814 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.77□□□□□ -0.853e-6■□□□□ 11.1
BRD9-209ENST00000490814 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.23□□□□□ -0.457e-6■□□□□ 10.8
BRD9-209ENST00000490814 ZC3H11AO75152 810 aaKnown RBP eCLIP10.51□□□□□ -0.733e-6■□□□□ 10.7
BRD9-209ENST00000490814 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.81□□□□□ -0.684e-7■□□□□ 10.2
BRD9-209ENST00000490814 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.2□□□□□ -0.782e-6■□□□□ 10.2
BRD9-209ENST00000490814 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.42□□□□□ -0.741e-6■□□□□ 9.9
BRD9-209ENST00000490814 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.12□□□□□ -0.636e-12■□□□□ 9.7
BRD9-209ENST00000490814 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.98□□□□□ -0.811e-6■□□□□ 9.2
BRD9-209ENST00000490814 RBM15Q96T37 977 aaKnown RBP eCLIP10.67□□□□□ -0.72e-8■□□□□ 9.1
BRD9-209ENST00000490814 EIF3HO15372 352 aaKnown RBP eCLIP11.21□□□□□ -0.613e-8■□□□□ 8.6
BRD9-209ENST00000490814 YBX3P16989 372 aaKnown RBP eCLIP10.93□□□□□ -0.664e-6■□□□□ 8.3
Retrieved 62 of 62 RNA–protein pairs in 13.2 ms