RNA–Protein interactions for RNA: ENST00000490796.1

SREBF1-216, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 698 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-216ENST00000490796 NISCHQ9Y2I1 1504 aa48.88■■■■■ 5.42
SREBF1-216ENST00000490796 CCDC180Q9P1Z9 1646 aa43.77■■■■■ 4.6
SREBF1-216ENST00000490796 ABCC9O60706 1549 aa43.73■■■■■ 4.59
SREBF1-216ENST00000490796 RB1CC1Q8TDY2 1594 aa41.67■■■■■ 4.26
SREBF1-216ENST00000490796 DCAF8L2P0C7V8 631 aa41.44■■■■■ 4.22
SREBF1-216ENST00000490796 NACADO15069 1562 aa41.41■■■■■ 4.22
SREBF1-216ENST00000490796 MYO15BQ96JP2 1530 aa40.83■■■■■ 4.13
SREBF1-216ENST00000490796 DNAJC5BQ9UF47 199 aa40.83■■■■■ 4.13
SREBF1-216ENST00000490796 PABPN1Q86U42 306 aaKnown RBP eCLIP40.78■■■■■ 4.12
SREBF1-216ENST00000490796 UNC13AQ9UPW8 1703 aa40.59■■■■■ 4.09
SREBF1-216ENST00000490796 ZCCHC6Q5VYS8 1495 aaKnown RBP40.52■■■■■ 4.08
SREBF1-216ENST00000490796 DCAF1Q9Y4B6 1507 aa40.37■■■■■ 4.05
SREBF1-216ENST00000490796 BICRAQ9NZM4 1560 aa40.34■■■■■ 4.05
SREBF1-216ENST00000490796 SCRIBQ14160 1630 aa39.95■■■■□ 3.99
SREBF1-216ENST00000490796 SHROOM4Q9ULL8 1493 aa39.9■■■■□ 3.98
SREBF1-216ENST00000490796 CC2D2AQ9P2K1 1620 aa39.46■■■■□ 3.91
SREBF1-216ENST00000490796 EIF4G1Q04637 1599 aaKnown RBP39.41■■■■□ 3.9
SREBF1-216ENST00000490796 CECR2Q9BXF3 1484 aa39.38■■■■□ 3.9
SREBF1-216ENST00000490796 NCAPD3P42695 1498 aa38.22■■■■□ 3.71
SREBF1-216ENST00000490796 ATAD2BQ9ULI0 1458 aa38.12■■■■□ 3.69
SREBF1-216ENST00000490796 SMARCA4P51532 1647 aa38.09■■■■□ 3.69
SREBF1-216ENST00000490796 SMARCA2P51531 1590 aa38.06■■■■□ 3.68
SREBF1-216ENST00000490796 BAZ1AQ9NRL2 1556 aaPredicted RBP37.97■■■■□ 3.67
SREBF1-216ENST00000490796 HMGXB3Q12766 1538 aa37.92■■■■□ 3.66
SREBF1-216ENST00000490796 ERCC6Q03468 1493 aa37.83■■■■□ 3.65
SREBF1-216ENST00000490796 BAZ1BQ9UIG0 1483 aaKnown RBP37.81■■■■□ 3.64
SREBF1-216ENST00000490796 PEG3Q9GZU2 1588 aa37.68■■■■□ 3.62
SREBF1-216ENST00000490796 MROH2BQ7Z745 1585 aa37.66■■■■□ 3.62
SREBF1-216ENST00000490796 CUX2O14529 1486 aa37.63■■■■□ 3.61
SREBF1-216ENST00000490796 NESP48681 1621 aa37.56■■■■□ 3.6
SREBF1-216ENST00000490796 DNAJC5Q9H3Z4 198 aa37.46■■■■□ 3.59
SREBF1-216ENST00000490796 LAMC3Q9Y6N6 1575 aa37.34■■■■□ 3.57
SREBF1-216ENST00000490796 PDS5BQ9NTI5 1447 aa37.2■■■■□ 3.55
SREBF1-216ENST00000490796 WIZO95785 1651 aa37.2■■■■□ 3.55
SREBF1-216ENST00000490796 CADPSQ9ULU8 1353 aa37.11■■■■□ 3.53
SREBF1-216ENST00000490796 THOC2Q8NI27 1593 aaKnown RBP37.1■■■■□ 3.53
SREBF1-216ENST00000490796 KIF21AQ7Z4S6 1674 aa37.05■■■■□ 3.52
SREBF1-216ENST00000490796 RSF1Q96T23 1441 aaPredicted RBP36.95■■■■□ 3.51
SREBF1-216ENST00000490796 MRC2Q9UBG0 1479 aa36.82■■■■□ 3.49
SREBF1-216ENST00000490796 TOP2AP11388 1531 aaKnown RBP36.78■■■■□ 3.48
SREBF1-216ENST00000490796 CEP164Q9UPV0 1460 aa36.73■■■■□ 3.47
SREBF1-216ENST00000490796 FANCD2Q9BXW9 1451 aa36.68■■■■□ 3.46
SREBF1-216ENST00000490796 CFTRP13569 1480 aa36.67■■■■□ 3.46
SREBF1-216ENST00000490796 WDR62O43379 1518 aa36.66■■■■□ 3.46
SREBF1-216ENST00000490796 CCDC88BA6NC98 1476 aa36.37■■■■□ 3.41
SREBF1-216ENST00000490796 URB2Q14146 1524 aaKnown RBP36.31■■■■□ 3.4
SREBF1-216ENST00000490796 PRDM2Q13029 1718 aa36.25■■■■□ 3.39
SREBF1-216ENST00000490796 OSCARQ8IYS5 282 aa36.02■■■■□ 3.36
SREBF1-216ENST00000490796 TRIM41Q8WV44 630 aa35.99■■■■□ 3.35
SREBF1-216ENST00000490796 IFT140Q96RY7 1462 aa35.98■■■■□ 3.35
SREBF1-216ENST00000490796 TOPBP1Q92547 1522 aa35.97■■■■□ 3.35
SREBF1-216ENST00000490796 ABCC8Q09428 1581 aa35.97■■■■□ 3.35
SREBF1-216ENST00000490796 DNMBPQ6XZF7 1577 aa35.85■■■■□ 3.33
SREBF1-216ENST00000490796 ZNF608Q9ULD9 1512 aaPredicted RBP35.85■■■■□ 3.33
SREBF1-216ENST00000490796 EIF4G3O43432 1585 aaKnown RBP35.65■■■■□ 3.3
SREBF1-216ENST00000490796 POLA1P09884 1462 aaPredicted RBP35.61■■■■□ 3.29
SREBF1-216ENST00000490796 SUPT5HO00267 1087 aaKnown RBP35.59■■■■□ 3.29
SREBF1-216ENST00000490796 AQRO60306 1485 aaKnown RBP eCLIP35.59■■■■□ 3.294e-9■■■■□ 25.2
SREBF1-216ENST00000490796 TARBP1Q13395 1621 aaKnown RBP35.58■■■■□ 3.29
SREBF1-216ENST00000490796 SOGA1O94964 1423 aa35.51■■■■□ 3.28
SREBF1-216ENST00000490796 RAD54L2Q9Y4B4 1467 aa35.49■■■■□ 3.27
SREBF1-216ENST00000490796 FBLN2P98095 1184 aa35.48■■■■□ 3.27
SREBF1-216ENST00000490796 FGD5Q6ZNL6 1462 aa35.42■■■■□ 3.26
SREBF1-216ENST00000490796 TDRD9Q8NDG6 1382 aaKnown RBP35.42■■■■□ 3.26
SREBF1-216ENST00000490796 RIMBP3CA6NJZ7 1639 aa35.4■■■■□ 3.26
SREBF1-216ENST00000490796 RIMBP3BA6NNM3 1639 aa35.4■■■■□ 3.26
SREBF1-216ENST00000490796 RIMBP3Q9UFD9 1639 aa35.4■■■■□ 3.26
SREBF1-216ENST00000490796 CUX1P39880 1505 aa35.37■■■■□ 3.25
SREBF1-216ENST00000490796 CHD1O14646 1710 aa35.35■■■■□ 3.25
SREBF1-216ENST00000490796 ARHGEF11O15085 1522 aa35.34■■■■□ 3.25
SREBF1-216ENST00000490796 WDR97A6NE52 1622 aa35.28■■■■□ 3.24
SREBF1-216ENST00000490796 SNAPC4Q5SXM2 1469 aa35.22■■■■□ 3.23
SREBF1-216ENST00000490796 CHMP7Q8WUX9 453 aaPredicted RBP35.21■■■■□ 3.23
SREBF1-216ENST00000490796 GRIN2BQ13224 1484 aa35.18■■■■□ 3.22
SREBF1-216ENST00000490796 CYB5RLQ6IPT4 315 aa35.18■■■■□ 3.22
SREBF1-216ENST00000490796 MAGI1Q96QZ7 1491 aaPredicted RBP35.15■■■■□ 3.22
SREBF1-216ENST00000490796 GAPVD1Q14C86 1478 aa35.07■■■■□ 3.2
SREBF1-216ENST00000490796 SYNJ2O15056 1496 aa35.03■■■■□ 3.2
SREBF1-216ENST00000490796 SYNJ1O43426 1573 aa35.02■■■■□ 3.2
SREBF1-216ENST00000490796 ABCA10Q8WWZ4 1543 aa35.01■■■■□ 3.2
SREBF1-216ENST00000490796 WRNQ14191 1432 aaPredicted RBP eCLIP34.98■■■■□ 3.19
SREBF1-216ENST00000490796 ARAP1Q96P48 1450 aa34.98■■■■□ 3.19
SREBF1-216ENST00000490796 PBRM1Q86U86 1689 aa34.97■■■■□ 3.19
SREBF1-216ENST00000490796 CLASP1Q7Z460 1538 aa34.93■■■■□ 3.18
SREBF1-216ENST00000490796 ABCA5Q8WWZ7 1642 aa34.9■■■■□ 3.18
SREBF1-216ENST00000490796 TOP2BQ02880 1626 aa34.85■■■■□ 3.17
SREBF1-216ENST00000490796 BIVM-ERCC5R4GMW8 1640 aa34.83■■■■□ 3.17
SREBF1-216ENST00000490796 TRHP20396 242 aaPredicted RBP34.81■■■■□ 3.16
SREBF1-216ENST00000490796 GRIN2AQ12879 1464 aa34.7■■■■□ 3.15
SREBF1-216ENST00000490796 ADAMTS12P58397 1594 aa34.66■■■■□ 3.14
SREBF1-216ENST00000490796 FHAD1B1AJZ9 1412 aa34.64■■■■□ 3.14
SREBF1-216ENST00000490796 ERICH3Q5RHP9 1530 aa34.59■■■■□ 3.13
SREBF1-216ENST00000490796 NUP160Q12769 1436 aa34.55■■■■□ 3.12
SREBF1-216ENST00000490796 CEP170Q5SW79 1584 aa34.52■■■■□ 3.12
SREBF1-216ENST00000490796 ERCC6L2Q5T890 1561 aa34.4■■■■□ 3.1
SREBF1-216ENST00000490796 SHROOM2Q13796 1616 aa34.33■■■■□ 3.09
SREBF1-216ENST00000490796 JPH4Q96JJ6 628 aa34.29■■■■□ 3.08
SREBF1-216ENST00000490796 KIF27Q86VH2 1401 aa34.29■■■■□ 3.08
SREBF1-216ENST00000490796 PRG4Q92954 1404 aaPredicted RBP34.28■■■■□ 3.08
SREBF1-216ENST00000490796 IGF1RP08069 1367 aa34.2■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms