RNA–Protein interactions for RNA: ENST00000490543.5

SRRM1-217, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 5

Gene SRRM1, Length 673 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-217ENST00000490543 AEBP2Q6ZN18 517 aaPredicted RBP29.89■■■□□ 2.38
SRRM1-217ENST00000490543 CHIC1Q5VXU3 224 aa28.72■■■□□ 2.19
SRRM1-217ENST00000490543 SENP3Q9H4L4 574 aaPredicted RBP25.41■■□□□ 1.66
SRRM1-217ENST00000490543 PHF23Q9BUL5 403 aaPredicted RBP25.23■■□□□ 1.63
SRRM1-217ENST00000490543 FOXD1Q16676 465 aa23.66■■□□□ 1.38
SRRM1-217ENST00000490543 PLPPR3Q6T4P5 718 aa23.1■■□□□ 1.29
SRRM1-217ENST00000490543 NISCHQ9Y2I1 1504 aa22.88■■□□□ 1.25
SRRM1-217ENST00000490543 PPP6R1Q9UPN7 881 aa22.42■■□□□ 1.18
SRRM1-217ENST00000490543 ADRA2BP18089 450 aa22.36■■□□□ 1.17
SRRM1-217ENST00000490543 PIAS4Q8N2W9 510 aaPredicted RBP22.19■■□□□ 1.14
SRRM1-217ENST00000490543 MSH5O43196 834 aa21.97■■□□□ 1.11
SRRM1-217ENST00000490543 ABCC9O60706 1549 aa20.99■□□□□ 0.95
SRRM1-217ENST00000490543 POTEDQ86YR6 584 aa20.85■□□□□ 0.93
SRRM1-217ENST00000490543 CCDC180Q9P1Z9 1646 aa20.58■□□□□ 0.89
SRRM1-217ENST00000490543 MAPK8IP2Q13387 824 aaPredicted RBP20.43■□□□□ 0.86
SRRM1-217ENST00000490543 SCAF1Q9H7N4 1312 aaKnown RBP20.42■□□□□ 0.86
SRRM1-217ENST00000490543 PPP4R3CPQ6ZMV5 832 aa20.31■□□□□ 0.84
SRRM1-217ENST00000490543 DMRT2Q9Y5R5 561 aa20.22■□□□□ 0.83
SRRM1-217ENST00000490543 DNAJC5BQ9UF47 199 aa20.06■□□□□ 0.8
SRRM1-217ENST00000490543 CNKSR2Q8WXI2 1034 aa19.83■□□□□ 0.77
SRRM1-217ENST00000490543 RB1CC1Q8TDY2 1594 aa19.76■□□□□ 0.75
SRRM1-217ENST00000490543 HOXD11P31277 338 aaPredicted RBP19.62■□□□□ 0.73
SRRM1-217ENST00000490543 NCBP3Q53F19 620 aaKnown RBP19.61■□□□□ 0.73
SRRM1-217ENST00000490543 NACADO15069 1562 aa19.57■□□□□ 0.72
SRRM1-217ENST00000490543 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
SRRM1-217ENST00000490543 RNF216Q9NWF9 866 aaPredicted RBP19.56■□□□□ 0.72
SRRM1-217ENST00000490543 DCAF8L2P0C7V8 631 aa19.55■□□□□ 0.72
SRRM1-217ENST00000490543 DCAF8L1A6NGE4 600 aa19.36■□□□□ 0.69
SRRM1-217ENST00000490543 NPM3O75607 178 aaKnown RBP19.36■□□□□ 0.69
SRRM1-217ENST00000490543 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
SRRM1-217ENST00000490543 KCNA4P22459 653 aa19.33■□□□□ 0.68
SRRM1-217ENST00000490543 BICRAQ9NZM4 1560 aa19.27■□□□□ 0.67
SRRM1-217ENST00000490543 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
SRRM1-217ENST00000490543 CECR2Q9BXF3 1484 aa18.92■□□□□ 0.62
SRRM1-217ENST00000490543 CC2D2AQ9P2K1 1620 aa18.91■□□□□ 0.62
SRRM1-217ENST00000490543 ZCCHC6Q5VYS8 1495 aaKnown RBP18.89■□□□□ 0.61
SRRM1-217ENST00000490543 SHROOM4Q9ULL8 1493 aa18.86■□□□□ 0.61
SRRM1-217ENST00000490543 DCAF1Q9Y4B6 1507 aa18.84■□□□□ 0.61
SRRM1-217ENST00000490543 SCRIBQ14160 1630 aa18.81■□□□□ 0.6
SRRM1-217ENST00000490543 RNF39Q9H2S5 420 aa18.8■□□□□ 0.6
SRRM1-217ENST00000490543 EIF4G1Q04637 1599 aaKnown RBP18.79■□□□□ 0.6
SRRM1-217ENST00000490543 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.68■□□□□ 0.583e-9■■■□□ 18.1
SRRM1-217ENST00000490543 CACNB1Q02641 598 aaPredicted RBP18.64■□□□□ 0.57
SRRM1-217ENST00000490543 DNAJC5Q9H3Z4 198 aa18.57■□□□□ 0.56
SRRM1-217ENST00000490543 C1QBPQ07021 282 aaKnown RBP18.53■□□□□ 0.56
SRRM1-217ENST00000490543 SLC4A2P04920 1241 aa18.41■□□□□ 0.54
SRRM1-217ENST00000490543 U3KPZ7 1027 aaPredicted RBP18.36■□□□□ 0.53
SRRM1-217ENST00000490543 SLC4A1APQ9BWU0 796 aaKnown RBP18.3■□□□□ 0.52
SRRM1-217ENST00000490543 CUX2O14529 1486 aa18.14■□□□□ 0.49
SRRM1-217ENST00000490543 NCAPD3P42695 1498 aa18.11■□□□□ 0.49
SRRM1-217ENST00000490543 ERCC6Q03468 1493 aa18.1■□□□□ 0.49
SRRM1-217ENST00000490543 ATAD2BQ9ULI0 1458 aa18.02■□□□□ 0.48
SRRM1-217ENST00000490543 SPINK5Q9NQ38 1064 aaPredicted RBP17.98■□□□□ 0.47
SRRM1-217ENST00000490543 NESP48681 1621 aa17.97■□□□□ 0.47
SRRM1-217ENST00000490543 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
SRRM1-217ENST00000490543 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
SRRM1-217ENST00000490543 CAPN15O75808 1086 aa17.91■□□□□ 0.46
SRRM1-217ENST00000490543 SMARCA2P51531 1590 aa17.91■□□□□ 0.46
SRRM1-217ENST00000490543 FOXD4L1Q9NU39 408 aa17.9■□□□□ 0.46
SRRM1-217ENST00000490543 SMARCA4P51532 1647 aa17.9■□□□□ 0.46
SRRM1-217ENST00000490543 HMGXB3Q12766 1538 aa17.89■□□□□ 0.45
SRRM1-217ENST00000490543 MYCNP04198 464 aaPredicted RBP17.89■□□□□ 0.45
SRRM1-217ENST00000490543 SAMD1Q6SPF0 538 aaPredicted RBP17.85■□□□□ 0.45
SRRM1-217ENST00000490543 APLP2Q06481 763 aa17.83■□□□□ 0.44
SRRM1-217ENST00000490543 BAZ1BQ9UIG0 1483 aaKnown RBP17.81■□□□□ 0.44
SRRM1-217ENST00000490543 ZBTB22O15209 634 aa17.79■□□□□ 0.44
SRRM1-217ENST00000490543 THOC2Q8NI27 1593 aaKnown RBP17.77■□□□□ 0.44
SRRM1-217ENST00000490543 BAZ1AQ9NRL2 1556 aaPredicted RBP17.74■□□□□ 0.43
SRRM1-217ENST00000490543 TRHP20396 242 aaPredicted RBP17.73■□□□□ 0.43
SRRM1-217ENST00000490543 DSG3P32926 999 aa17.73■□□□□ 0.43
SRRM1-217ENST00000490543 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
SRRM1-217ENST00000490543 LAMC3Q9Y6N6 1575 aa17.7■□□□□ 0.42
SRRM1-217ENST00000490543 ZNF219Q9P2Y4 722 aaPredicted RBP17.68■□□□□ 0.42
SRRM1-217ENST00000490543 MROH2BQ7Z745 1585 aa17.66■□□□□ 0.42
SRRM1-217ENST00000490543 KIF21AQ7Z4S6 1674 aa17.66■□□□□ 0.42
SRRM1-217ENST00000490543 TRIM41Q8WV44 630 aa17.65■□□□□ 0.42
SRRM1-217ENST00000490543 PDS5BQ9NTI5 1447 aa17.64■□□□□ 0.41
SRRM1-217ENST00000490543 CADPSQ9ULU8 1353 aa17.56■□□□□ 0.4
SRRM1-217ENST00000490543 ABCB7O75027 752 aa17.55■□□□□ 0.4
SRRM1-217ENST00000490543 MRC2Q9UBG0 1479 aa17.5■□□□□ 0.39
SRRM1-217ENST00000490543 ATF5Q9Y2D1 282 aaPredicted RBP17.47■□□□□ 0.39
SRRM1-217ENST00000490543 WDR62O43379 1518 aa17.46■□□□□ 0.39
SRRM1-217ENST00000490543 WIZO95785 1651 aa17.42■□□□□ 0.38
SRRM1-217ENST00000490543 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
SRRM1-217ENST00000490543 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
SRRM1-217ENST00000490543 OSCARQ8IYS5 282 aa17.34■□□□□ 0.37
SRRM1-217ENST00000490543 POLA2Q14181 598 aa17.33■□□□□ 0.36
SRRM1-217ENST00000490543 ATXN8OSP0DMR3 200 aa17.3■□□□□ 0.36
SRRM1-217ENST00000490543 CSRNP3Q8WYN3 585 aa17.3■□□□□ 0.36
SRRM1-217ENST00000490543 CFTRP13569 1480 aa17.29■□□□□ 0.36
SRRM1-217ENST00000490543 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
SRRM1-217ENST00000490543 URB2Q14146 1524 aaKnown RBP17.24■□□□□ 0.35
SRRM1-217ENST00000490543 RSF1Q96T23 1441 aaPredicted RBP17.2■□□□□ 0.34
SRRM1-217ENST00000490543 TOP2AP11388 1531 aaKnown RBP17.14■□□□□ 0.33
SRRM1-217ENST00000490543 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
SRRM1-217ENST00000490543 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
SRRM1-217ENST00000490543 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
SRRM1-217ENST00000490543 ZNF608Q9ULD9 1512 aaPredicted RBP17.1■□□□□ 0.33
SRRM1-217ENST00000490543 IFT140Q96RY7 1462 aa17.03■□□□□ 0.32
SRRM1-217ENST00000490543 ARHGEF11O15085 1522 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms