RNA–Protein interactions for RNA: ENST00000489921.1

TNFRSF1B-202, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 3

Gene TNFRSF1B, Length 409 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-202ENST00000489921 NISCHQ9Y2I1 1504 aa48.6■■■■■ 5.37
TNFRSF1B-202ENST00000489921 CCDC180Q9P1Z9 1646 aa43.5■■■■■ 4.55
TNFRSF1B-202ENST00000489921 ABCC9O60706 1549 aa43.27■■■■■ 4.52
TNFRSF1B-202ENST00000489921 RB1CC1Q8TDY2 1594 aa41.26■■■■■ 4.2
TNFRSF1B-202ENST00000489921 NACADO15069 1562 aa41.06■■■■■ 4.16
TNFRSF1B-202ENST00000489921 DCAF8L2P0C7V8 631 aa40.81■■■■■ 4.12
TNFRSF1B-202ENST00000489921 MYO15BQ96JP2 1530 aa40.6■■■■■ 4.09
TNFRSF1B-202ENST00000489921 DNAJC5BQ9UF47 199 aa40.5■■■■■ 4.07
TNFRSF1B-202ENST00000489921 UNC13AQ9UPW8 1703 aa40.46■■■■■ 4.07
TNFRSF1B-202ENST00000489921 ZCCHC6Q5VYS8 1495 aaKnown RBP40.32■■■■■ 4.05
TNFRSF1B-202ENST00000489921 PABPN1Q86U42 306 aaKnown RBP eCLIP40.32■■■■■ 4.05
TNFRSF1B-202ENST00000489921 BICRAQ9NZM4 1560 aa40.17■■■■■ 4.02
TNFRSF1B-202ENST00000489921 DCAF1Q9Y4B6 1507 aa40.16■■■■■ 4.02
TNFRSF1B-202ENST00000489921 SCRIBQ14160 1630 aa39.64■■■■□ 3.94
TNFRSF1B-202ENST00000489921 SHROOM4Q9ULL8 1493 aa39.53■■■■□ 3.92
TNFRSF1B-202ENST00000489921 CC2D2AQ9P2K1 1620 aa39.13■■■■□ 3.85
TNFRSF1B-202ENST00000489921 EIF4G1Q04637 1599 aaKnown RBP39.09■■■■□ 3.85
TNFRSF1B-202ENST00000489921 CECR2Q9BXF3 1484 aa38.94■■■■□ 3.82
TNFRSF1B-202ENST00000489921 NCAPD3P42695 1498 aa37.93■■■■□ 3.66
TNFRSF1B-202ENST00000489921 SMARCA4P51532 1647 aa37.87■■■■□ 3.65
TNFRSF1B-202ENST00000489921 ATAD2BQ9ULI0 1458 aa37.84■■■■□ 3.65
TNFRSF1B-202ENST00000489921 SMARCA2P51531 1590 aa37.7■■■■□ 3.63
TNFRSF1B-202ENST00000489921 BAZ1AQ9NRL2 1556 aaPredicted RBP37.67■■■■□ 3.62
TNFRSF1B-202ENST00000489921 HMGXB3Q12766 1538 aa37.65■■■■□ 3.62
TNFRSF1B-202ENST00000489921 PEG3Q9GZU2 1588 aa37.52■■■■□ 3.6
TNFRSF1B-202ENST00000489921 MROH2BQ7Z745 1585 aa37.47■■■■□ 3.59
TNFRSF1B-202ENST00000489921 BAZ1BQ9UIG0 1483 aaKnown RBP37.44■■■■□ 3.58
TNFRSF1B-202ENST00000489921 NESP48681 1621 aa37.28■■■■□ 3.56
TNFRSF1B-202ENST00000489921 ERCC6Q03468 1493 aa37.26■■■■□ 3.56
TNFRSF1B-202ENST00000489921 CUX2O14529 1486 aa37.18■■■■□ 3.54
TNFRSF1B-202ENST00000489921 WIZO95785 1651 aa37.04■■■■□ 3.52
TNFRSF1B-202ENST00000489921 LAMC3Q9Y6N6 1575 aa37.01■■■■□ 3.52
TNFRSF1B-202ENST00000489921 DNAJC5Q9H3Z4 198 aa36.95■■■■□ 3.51
TNFRSF1B-202ENST00000489921 THOC2Q8NI27 1593 aaKnown RBP36.86■■■■□ 3.49
TNFRSF1B-202ENST00000489921 KIF21AQ7Z4S6 1674 aa36.81■■■■□ 3.48
TNFRSF1B-202ENST00000489921 RSF1Q96T23 1441 aaPredicted RBP36.77■■■■□ 3.48
TNFRSF1B-202ENST00000489921 CADPSQ9ULU8 1353 aa36.76■■■■□ 3.47
TNFRSF1B-202ENST00000489921 PDS5BQ9NTI5 1447 aa36.75■■■■□ 3.47
TNFRSF1B-202ENST00000489921 TOP2AP11388 1531 aaKnown RBP36.54■■■■□ 3.44
TNFRSF1B-202ENST00000489921 MRC2Q9UBG0 1479 aa36.43■■■■□ 3.42
TNFRSF1B-202ENST00000489921 CFTRP13569 1480 aa36.42■■■■□ 3.42
TNFRSF1B-202ENST00000489921 WDR62O43379 1518 aa36.38■■■■□ 3.41
TNFRSF1B-202ENST00000489921 FANCD2Q9BXW9 1451 aa36.33■■■■□ 3.41
TNFRSF1B-202ENST00000489921 CEP164Q9UPV0 1460 aa36.32■■■■□ 3.41
TNFRSF1B-202ENST00000489921 CCDC88BA6NC98 1476 aa36.16■■■■□ 3.38
TNFRSF1B-202ENST00000489921 PRDM2Q13029 1718 aa36.08■■■■□ 3.37
TNFRSF1B-202ENST00000489921 URB2Q14146 1524 aaKnown RBP36.07■■■■□ 3.36
TNFRSF1B-202ENST00000489921 TOPBP1Q92547 1522 aa35.69■■■■□ 3.3
TNFRSF1B-202ENST00000489921 IFT140Q96RY7 1462 aa35.6■■■■□ 3.29
TNFRSF1B-202ENST00000489921 ZNF608Q9ULD9 1512 aaPredicted RBP35.59■■■■□ 3.29
TNFRSF1B-202ENST00000489921 ABCC8Q09428 1581 aa35.58■■■■□ 3.29
TNFRSF1B-202ENST00000489921 DNMBPQ6XZF7 1577 aa35.57■■■■□ 3.28
TNFRSF1B-202ENST00000489921 OSCARQ8IYS5 282 aa35.5■■■■□ 3.27
TNFRSF1B-202ENST00000489921 TARBP1Q13395 1621 aaKnown RBP35.41■■■■□ 3.26
TNFRSF1B-202ENST00000489921 EIF4G3O43432 1585 aaKnown RBP35.38■■■■□ 3.25
TNFRSF1B-202ENST00000489921 POLA1P09884 1462 aaPredicted RBP35.35■■■■□ 3.25
TNFRSF1B-202ENST00000489921 TRIM41Q8WV44 630 aa35.33■■■■□ 3.25
TNFRSF1B-202ENST00000489921 AQRO60306 1485 aaKnown RBP eCLIP35.27■■■■□ 3.246e-9■■■■■ 46.7
TNFRSF1B-202ENST00000489921 RAD54L2Q9Y4B4 1467 aa35.22■■■■□ 3.23
TNFRSF1B-202ENST00000489921 SUPT5HO00267 1087 aaKnown RBP35.22■■■■□ 3.23
TNFRSF1B-202ENST00000489921 CUX1P39880 1505 aa35.19■■■■□ 3.22
TNFRSF1B-202ENST00000489921 SOGA1O94964 1423 aa35.16■■■■□ 3.22
TNFRSF1B-202ENST00000489921 FGD5Q6ZNL6 1462 aa35.14■■■■□ 3.22
TNFRSF1B-202ENST00000489921 CHD1O14646 1710 aa35.09■■■■□ 3.21
TNFRSF1B-202ENST00000489921 RIMBP3CA6NJZ7 1639 aa35.08■■■■□ 3.21
TNFRSF1B-202ENST00000489921 RIMBP3BA6NNM3 1639 aa35.08■■■■□ 3.21
TNFRSF1B-202ENST00000489921 RIMBP3Q9UFD9 1639 aa35.08■■■■□ 3.21
TNFRSF1B-202ENST00000489921 TDRD9Q8NDG6 1382 aaKnown RBP35.08■■■■□ 3.21
TNFRSF1B-202ENST00000489921 WDR97A6NE52 1622 aa34.99■■■■□ 3.19
TNFRSF1B-202ENST00000489921 ARHGEF11O15085 1522 aa34.97■■■■□ 3.19
TNFRSF1B-202ENST00000489921 FBLN2P98095 1184 aa34.9■■■■□ 3.18
TNFRSF1B-202ENST00000489921 SNAPC4Q5SXM2 1469 aa34.89■■■■□ 3.18
TNFRSF1B-202ENST00000489921 GRIN2BQ13224 1484 aa34.82■■■■□ 3.16
TNFRSF1B-202ENST00000489921 MAGI1Q96QZ7 1491 aaPredicted RBP34.79■■■■□ 3.16
TNFRSF1B-202ENST00000489921 ABCA10Q8WWZ4 1543 aa34.76■■■■□ 3.16
TNFRSF1B-202ENST00000489921 PBRM1Q86U86 1689 aa34.75■■■■□ 3.15
TNFRSF1B-202ENST00000489921 GAPVD1Q14C86 1478 aa34.74■■■■□ 3.15
TNFRSF1B-202ENST00000489921 ABCA5Q8WWZ7 1642 aa34.72■■■■□ 3.15
TNFRSF1B-202ENST00000489921 CHMP7Q8WUX9 453 aaPredicted RBP34.7■■■■□ 3.15
TNFRSF1B-202ENST00000489921 CLASP1Q7Z460 1538 aa34.7■■■■□ 3.14
TNFRSF1B-202ENST00000489921 SYNJ2O15056 1496 aa34.69■■■■□ 3.14
TNFRSF1B-202ENST00000489921 BIVM-ERCC5R4GMW8 1640 aa34.69■■■■□ 3.14
TNFRSF1B-202ENST00000489921 CYB5RLQ6IPT4 315 aa34.67■■■■□ 3.14
TNFRSF1B-202ENST00000489921 TOP2BQ02880 1626 aa34.66■■■■□ 3.14
TNFRSF1B-202ENST00000489921 ARAP1Q96P48 1450 aa34.65■■■■□ 3.14
TNFRSF1B-202ENST00000489921 SYNJ1O43426 1573 aa34.65■■■■□ 3.14
TNFRSF1B-202ENST00000489921 WRNQ14191 1432 aaPredicted RBP eCLIP34.62■■■■□ 3.13
TNFRSF1B-202ENST00000489921 ADAMTS12P58397 1594 aa34.41■■■■□ 3.1
TNFRSF1B-202ENST00000489921 GRIN2AQ12879 1464 aa34.39■■■■□ 3.1
TNFRSF1B-202ENST00000489921 ERICH3Q5RHP9 1530 aa34.32■■■■□ 3.08
TNFRSF1B-202ENST00000489921 FHAD1B1AJZ9 1412 aa34.3■■■■□ 3.08
TNFRSF1B-202ENST00000489921 NUP160Q12769 1436 aa34.3■■■■□ 3.08
TNFRSF1B-202ENST00000489921 CEP170Q5SW79 1584 aa34.29■■■■□ 3.08
TNFRSF1B-202ENST00000489921 ERCC6L2Q5T890 1561 aa34.21■■■■□ 3.07
TNFRSF1B-202ENST00000489921 TRHP20396 242 aaPredicted RBP34.14■■■■□ 3.06
TNFRSF1B-202ENST00000489921 SHROOM2Q13796 1616 aa34.14■■■■□ 3.06
TNFRSF1B-202ENST00000489921 IGF1RP08069 1367 aa33.98■■■■□ 3.03
TNFRSF1B-202ENST00000489921 KIF27Q86VH2 1401 aa33.93■■■■□ 3.02
TNFRSF1B-202ENST00000489921 RUSC2Q8N2Y8 1516 aa33.93■■■■□ 3.02
TNFRSF1B-202ENST00000489921 JPH4Q96JJ6 628 aa33.91■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms