RNA–Protein interactions for RNA: ENST00000489907.2

SMG5-205, Transcript of SMG5, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG5, Length 535 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG5-205ENST00000489907 NISCHQ9Y2I1 1504 aa20.83■□□□□ 0.93
SMG5-205ENST00000489907 ABCC9O60706 1549 aa18.8■□□□□ 0.6
SMG5-205ENST00000489907 CCDC180Q9P1Z9 1646 aa18.74■□□□□ 0.59
SMG5-205ENST00000489907 RB1CC1Q8TDY2 1594 aa17.85■□□□□ 0.45
SMG5-205ENST00000489907 DNAJC5BQ9UF47 199 aa17.85■□□□□ 0.45
SMG5-205ENST00000489907 NACADO15069 1562 aa17.72■□□□□ 0.43
SMG5-205ENST00000489907 UNC13AQ9UPW8 1703 aa17.56■□□□□ 0.4
SMG5-205ENST00000489907 DCAF8L2P0C7V8 631 aa17.51■□□□□ 0.39
SMG5-205ENST00000489907 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
SMG5-205ENST00000489907 MYO15BQ96JP2 1530 aa17.47■□□□□ 0.39
SMG5-205ENST00000489907 BICRAQ9NZM4 1560 aa17.44■□□□□ 0.38
SMG5-205ENST00000489907 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
SMG5-205ENST00000489907 DCAF1Q9Y4B6 1507 aa17.21■□□□□ 0.35
SMG5-205ENST00000489907 SHROOM4Q9ULL8 1493 aa17.08■□□□□ 0.32
SMG5-205ENST00000489907 CC2D2AQ9P2K1 1620 aa17.02■□□□□ 0.31
SMG5-205ENST00000489907 SCRIBQ14160 1630 aa17.01■□□□□ 0.31
SMG5-205ENST00000489907 EIF4G1Q04637 1599 aaKnown RBP16.95■□□□□ 0.3
SMG5-205ENST00000489907 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
SMG5-205ENST00000489907 DNAJC5Q9H3Z4 198 aa16.41■□□□□ 0.22
SMG5-205ENST00000489907 NCAPD3P42695 1498 aa16.4■□□□□ 0.22
SMG5-205ENST00000489907 ATAD2BQ9ULI0 1458 aa16.31■□□□□ 0.2
SMG5-205ENST00000489907 SMARCA4P51532 1647 aa16.27■□□□□ 0.19
SMG5-205ENST00000489907 CUX2O14529 1486 aa16.24■□□□□ 0.19
SMG5-205ENST00000489907 HMGXB3Q12766 1538 aa16.23■□□□□ 0.19
SMG5-205ENST00000489907 SMARCA2P51531 1590 aa16.21■□□□□ 0.19
SMG5-205ENST00000489907 NESP48681 1621 aa16.16■□□□□ 0.18
SMG5-205ENST00000489907 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
SMG5-205ENST00000489907 PEG3Q9GZU2 1588 aa16.15■□□□□ 0.18
SMG5-205ENST00000489907 BAZ1AQ9NRL2 1556 aaPredicted RBP16.13■□□□□ 0.17
SMG5-205ENST00000489907 BAZ1BQ9UIG0 1483 aaKnown RBP16.08■□□□□ 0.16
SMG5-205ENST00000489907 MROH2BQ7Z745 1585 aa16.07■□□□□ 0.16
SMG5-205ENST00000489907 THOC2Q8NI27 1593 aaKnown RBP16.03■□□□□ 0.16
SMG5-205ENST00000489907 LAMC3Q9Y6N6 1575 aa16■□□□□ 0.15
SMG5-205ENST00000489907 KIF21AQ7Z4S6 1674 aa15.96■□□□□ 0.15
SMG5-205ENST00000489907 PDS5BQ9NTI5 1447 aa15.87■□□□□ 0.13
SMG5-205ENST00000489907 WIZO95785 1651 aa15.87■□□□□ 0.13
SMG5-205ENST00000489907 CADPSQ9ULU8 1353 aa15.86■□□□□ 0.13
SMG5-205ENST00000489907 WDR62O43379 1518 aa15.76■□□□□ 0.11
SMG5-205ENST00000489907 MRC2Q9UBG0 1479 aa15.76■□□□□ 0.11
SMG5-205ENST00000489907 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
SMG5-205ENST00000489907 CFTRP13569 1480 aa15.68■□□□□ 0.1
SMG5-205ENST00000489907 CEP164Q9UPV0 1460 aa15.66■□□□□ 0.1
SMG5-205ENST00000489907 FANCD2Q9BXW9 1451 aa15.65■□□□□ 0.1
SMG5-205ENST00000489907 TOP2AP11388 1531 aaKnown RBP15.62■□□□□ 0.09
SMG5-205ENST00000489907 URB2Q14146 1524 aaKnown RBP15.58■□□□□ 0.08
SMG5-205ENST00000489907 TRIM41Q8WV44 630 aa15.54■□□□□ 0.08
SMG5-205ENST00000489907 PRDM2Q13029 1718 aa15.52■□□□□ 0.08
SMG5-205ENST00000489907 OSCARQ8IYS5 282 aa15.47■□□□□ 0.07
SMG5-205ENST00000489907 CCDC88BA6NC98 1476 aa15.46■□□□□ 0.07
SMG5-205ENST00000489907 ZNF608Q9ULD9 1512 aaPredicted RBP15.4■□□□□ 0.06
SMG5-205ENST00000489907 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
SMG5-205ENST00000489907 IFT140Q96RY7 1462 aa15.36■□□□□ 0.05
SMG5-205ENST00000489907 RIMBP3CA6NJZ7 1639 aa15.33■□□□□ 0.04
SMG5-205ENST00000489907 RIMBP3BA6NNM3 1639 aa15.33■□□□□ 0.04
SMG5-205ENST00000489907 RIMBP3Q9UFD9 1639 aa15.33■□□□□ 0.04
SMG5-205ENST00000489907 ABCC8Q09428 1581 aa15.3■□□□□ 0.04
SMG5-205ENST00000489907 TARBP1Q13395 1621 aaKnown RBP15.29■□□□□ 0.04
SMG5-205ENST00000489907 EIF4G3O43432 1585 aaKnown RBP15.28■□□□□ 0.04
SMG5-205ENST00000489907 DNMBPQ6XZF7 1577 aa15.28■□□□□ 0.04
SMG5-205ENST00000489907 ARHGEF11O15085 1522 aa15.25■□□□□ 0.03
SMG5-205ENST00000489907 AQRO60306 1485 aaKnown RBP eCLIP15.23■□□□□ 0.037e-6■□□□□ 9.9
SMG5-205ENST00000489907 CHD1O14646 1710 aa15.22■□□□□ 0.03
SMG5-205ENST00000489907 POLA1P09884 1462 aaPredicted RBP15.21■□□□□ 0.03
SMG5-205ENST00000489907 RAD54L2Q9Y4B4 1467 aa15.16■□□□□ 0.02
SMG5-205ENST00000489907 CHIC1Q5VXU3 224 aa15.14■□□□□ 0.01
SMG5-205ENST00000489907 CYB5RLQ6IPT4 315 aa15.12■□□□□ 0.01
SMG5-205ENST00000489907 SOGA1O94964 1423 aa15.11■□□□□ 0.01
SMG5-205ENST00000489907 ARAP1Q96P48 1450 aa15.11■□□□□ 0.01
SMG5-205ENST00000489907 TDRD9Q8NDG6 1382 aaKnown RBP15.11■□□□□ 0.01
SMG5-205ENST00000489907 CUX1P39880 1505 aa15.08■□□□□ 0.01
SMG5-205ENST00000489907 FGD5Q6ZNL6 1462 aa15.08■□□□□ 0
SMG5-205ENST00000489907 WDR97A6NE52 1622 aa15.06■□□□□ 0
SMG5-205ENST00000489907 FBLN2P98095 1184 aa15.05■□□□□ -0
SMG5-205ENST00000489907 CLASP1Q7Z460 1538 aa15.05■□□□□ -0
SMG5-205ENST00000489907 SNAPC4Q5SXM2 1469 aa15.04■□□□□ -0
SMG5-205ENST00000489907 MAGI1Q96QZ7 1491 aaPredicted RBP15□□□□□ -0.01
SMG5-205ENST00000489907 GRIN2BQ13224 1484 aa14.99□□□□□ -0.01
SMG5-205ENST00000489907 SYNJ1O43426 1573 aa14.96□□□□□ -0.01
SMG5-205ENST00000489907 PBRM1Q86U86 1689 aa14.96□□□□□ -0.01
SMG5-205ENST00000489907 SYNJ2O15056 1496 aa14.95□□□□□ -0.02
SMG5-205ENST00000489907 CHMP7Q8WUX9 453 aaPredicted RBP14.95□□□□□ -0.02
SMG5-205ENST00000489907 ABCA5Q8WWZ7 1642 aa14.92□□□□□ -0.02
SMG5-205ENST00000489907 TRHP20396 242 aaPredicted RBP14.92□□□□□ -0.02
SMG5-205ENST00000489907 GAPVD1Q14C86 1478 aa14.92□□□□□ -0.02
SMG5-205ENST00000489907 ABCA10Q8WWZ4 1543 aa14.92□□□□□ -0.02
SMG5-205ENST00000489907 ERCC6L2Q5T890 1561 aa14.82□□□□□ -0.04
SMG5-205ENST00000489907 BIVM-ERCC5R4GMW8 1640 aa14.82□□□□□ -0.04
SMG5-205ENST00000489907 SUPT5HO00267 1087 aaKnown RBP14.81□□□□□ -0.04
SMG5-205ENST00000489907 GRIN2AQ12879 1464 aa14.81□□□□□ -0.04
SMG5-205ENST00000489907 TOP2BQ02880 1626 aa14.81□□□□□ -0.04
SMG5-205ENST00000489907 CEP170Q5SW79 1584 aa14.8□□□□□ -0.04
SMG5-205ENST00000489907 NUP160Q12769 1436 aa14.79□□□□□ -0.04
SMG5-205ENST00000489907 WRNQ14191 1432 aaPredicted RBP eCLIP14.79□□□□□ -0.04
SMG5-205ENST00000489907 ADAMTS12P58397 1594 aa14.78□□□□□ -0.04
SMG5-205ENST00000489907 SHROOM2Q13796 1616 aa14.77□□□□□ -0.05
SMG5-205ENST00000489907 FHAD1B1AJZ9 1412 aa14.73□□□□□ -0.05
SMG5-205ENST00000489907 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.05
SMG5-205ENST00000489907 KIF13AQ9H1H9 1805 aa14.64□□□□□ -0.07
SMG5-205ENST00000489907 JPH4Q96JJ6 628 aa14.62□□□□□ -0.07
SMG5-205ENST00000489907 PRG4Q92954 1404 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms