RNA–Protein interactions for RNA: ENST00000489808.1

EPHB4-207, Transcript of EPH receptor B4, humanhuman

TSL 1 (best)

Gene EPHB4, Length 921 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB4-207ENST00000489808 NISCHQ9Y2I1 1504 aa46.56■■■■■ 5.04
EPHB4-207ENST00000489808 CCDC180Q9P1Z9 1646 aa41.28■■■■■ 4.2
EPHB4-207ENST00000489808 ABCC9O60706 1549 aa40.74■■■■■ 4.11
EPHB4-207ENST00000489808 DCAF8L2P0C7V8 631 aa39.15■■■■□ 3.86
EPHB4-207ENST00000489808 RB1CC1Q8TDY2 1594 aa39.04■■■■□ 3.84
EPHB4-207ENST00000489808 NACADO15069 1562 aa38.98■■■■□ 3.83
EPHB4-207ENST00000489808 MYO15BQ96JP2 1530 aa38.72■■■■□ 3.79
EPHB4-207ENST00000489808 ZCCHC6Q5VYS8 1495 aaKnown RBP38.71■■■■□ 3.79
EPHB4-207ENST00000489808 DCAF1Q9Y4B6 1507 aa38.48■■■■□ 3.75
EPHB4-207ENST00000489808 PABPN1Q86U42 306 aaKnown RBP eCLIP38.17■■■■□ 3.7
EPHB4-207ENST00000489808 UNC13AQ9UPW8 1703 aa37.98■■■■□ 3.67
EPHB4-207ENST00000489808 BICRAQ9NZM4 1560 aa37.87■■■■□ 3.65
EPHB4-207ENST00000489808 SCRIBQ14160 1630 aa37.73■■■■□ 3.63
EPHB4-207ENST00000489808 DNAJC5BQ9UF47 199 aa37.69■■■■□ 3.62
EPHB4-207ENST00000489808 SHROOM4Q9ULL8 1493 aa37.45■■■■□ 3.59
EPHB4-207ENST00000489808 EIF4G1Q04637 1599 aaKnown RBP36.88■■■■□ 3.49
EPHB4-207ENST00000489808 CC2D2AQ9P2K1 1620 aa36.77■■■■□ 3.48
EPHB4-207ENST00000489808 CECR2Q9BXF3 1484 aa36.62■■■■□ 3.45
EPHB4-207ENST00000489808 SMARCA4P51532 1647 aa36.08■■■■□ 3.37
EPHB4-207ENST00000489808 NCAPD3P42695 1498 aa36.06■■■■□ 3.36
EPHB4-207ENST00000489808 BAZ1AQ9NRL2 1556 aaPredicted RBP36.05■■■■□ 3.36
EPHB4-207ENST00000489808 ATAD2BQ9ULI0 1458 aa36.04■■■■□ 3.36
EPHB4-207ENST00000489808 SMARCA2P51531 1590 aa35.91■■■■□ 3.34
EPHB4-207ENST00000489808 MROH2BQ7Z745 1585 aa35.88■■■■□ 3.33
EPHB4-207ENST00000489808 HMGXB3Q12766 1538 aa35.74■■■■□ 3.31
EPHB4-207ENST00000489808 PEG3Q9GZU2 1588 aa35.74■■■■□ 3.31
EPHB4-207ENST00000489808 BAZ1BQ9UIG0 1483 aaKnown RBP35.68■■■■□ 3.3
EPHB4-207ENST00000489808 RSF1Q96T23 1441 aaPredicted RBP35.48■■■■□ 3.27
EPHB4-207ENST00000489808 WIZO95785 1651 aa35.41■■■■□ 3.26
EPHB4-207ENST00000489808 NESP48681 1621 aa35.2■■■■□ 3.23
EPHB4-207ENST00000489808 ERCC6Q03468 1493 aa35.11■■■■□ 3.21
EPHB4-207ENST00000489808 TOP2AP11388 1531 aaKnown RBP35.04■■■■□ 3.2
EPHB4-207ENST00000489808 CADPSQ9ULU8 1353 aa35.03■■■■□ 3.2
EPHB4-207ENST00000489808 LAMC3Q9Y6N6 1575 aa35.01■■■■□ 3.2
EPHB4-207ENST00000489808 PDS5BQ9NTI5 1447 aa34.9■■■■□ 3.18
EPHB4-207ENST00000489808 CUX2O14529 1486 aa34.78■■■■□ 3.16
EPHB4-207ENST00000489808 CFTRP13569 1480 aa34.74■■■■□ 3.15
EPHB4-207ENST00000489808 CCDC88BA6NC98 1476 aa34.73■■■■□ 3.15
EPHB4-207ENST00000489808 KIF21AQ7Z4S6 1674 aa34.61■■■■□ 3.13
EPHB4-207ENST00000489808 THOC2Q8NI27 1593 aaKnown RBP34.57■■■■□ 3.13
EPHB4-207ENST00000489808 FANCD2Q9BXW9 1451 aa34.56■■■■□ 3.12
EPHB4-207ENST00000489808 SUPT5HO00267 1087 aaKnown RBP34.54■■■■□ 3.12
EPHB4-207ENST00000489808 CEP164Q9UPV0 1460 aa34.5■■■■□ 3.11
EPHB4-207ENST00000489808 MRC2Q9UBG0 1479 aa34.49■■■■□ 3.11
EPHB4-207ENST00000489808 WDR62O43379 1518 aa34.34■■■■□ 3.09
EPHB4-207ENST00000489808 URB2Q14146 1524 aaKnown RBP34.21■■■■□ 3.07
EPHB4-207ENST00000489808 PRDM2Q13029 1718 aa34.17■■■■□ 3.06
EPHB4-207ENST00000489808 DNAJC5Q9H3Z4 198 aa34.06■■■■□ 3.04
EPHB4-207ENST00000489808 ABCC8Q09428 1581 aa33.98■■■■□ 3.03
EPHB4-207ENST00000489808 TOPBP1Q92547 1522 aa33.97■■■■□ 3.03
EPHB4-207ENST00000489808 DNMBPQ6XZF7 1577 aa33.86■■■■□ 3.01
EPHB4-207ENST00000489808 IFT140Q96RY7 1462 aa33.82■■■■□ 3.01
EPHB4-207ENST00000489808 ZNF608Q9ULD9 1512 aaPredicted RBP33.69■■■□□ 2.98
EPHB4-207ENST00000489808 POLA1P09884 1462 aaPredicted RBP33.69■■■□□ 2.98
EPHB4-207ENST00000489808 CUX1P39880 1505 aa33.65■■■□□ 2.98
EPHB4-207ENST00000489808 SOGA1O94964 1423 aa33.62■■■□□ 2.97
EPHB4-207ENST00000489808 RAD54L2Q9Y4B4 1467 aa33.57■■■□□ 2.97
EPHB4-207ENST00000489808 FGD5Q6ZNL6 1462 aa33.56■■■□□ 2.96
EPHB4-207ENST00000489808 TARBP1Q13395 1621 aaKnown RBP33.56■■■□□ 2.96
EPHB4-207ENST00000489808 AQRO60306 1485 aaKnown RBP eCLIP33.52■■■□□ 2.965e-7■■■■■ 31.6
EPHB4-207ENST00000489808 OSCARQ8IYS5 282 aa33.48■■■□□ 2.95
EPHB4-207ENST00000489808 TDRD9Q8NDG6 1382 aaKnown RBP33.47■■■□□ 2.95
EPHB4-207ENST00000489808 WRNQ14191 1432 aaPredicted RBP eCLIP33.43■■■□□ 2.94
EPHB4-207ENST00000489808 EIF4G3O43432 1585 aaKnown RBP33.41■■■□□ 2.94
EPHB4-207ENST00000489808 TOP2BQ02880 1626 aa33.28■■■□□ 2.92
EPHB4-207ENST00000489808 SYNJ1O43426 1573 aa33.26■■■□□ 2.91
EPHB4-207ENST00000489808 ABCA10Q8WWZ4 1543 aa33.25■■■□□ 2.91
EPHB4-207ENST00000489808 WDR97A6NE52 1622 aa33.24■■■□□ 2.91
EPHB4-207ENST00000489808 BIVM-ERCC5R4GMW8 1640 aa33.21■■■□□ 2.91
EPHB4-207ENST00000489808 FBLN2P98095 1184 aa33.21■■■□□ 2.91
EPHB4-207ENST00000489808 GRIN2BQ13224 1484 aa33.18■■■□□ 2.9
EPHB4-207ENST00000489808 GAPVD1Q14C86 1478 aa33.18■■■□□ 2.9
EPHB4-207ENST00000489808 SNAPC4Q5SXM2 1469 aa33.13■■■□□ 2.89
EPHB4-207ENST00000489808 CHMP7Q8WUX9 453 aaPredicted RBP33.1■■■□□ 2.89
EPHB4-207ENST00000489808 MAGI1Q96QZ7 1491 aaPredicted RBP33.08■■■□□ 2.89
EPHB4-207ENST00000489808 ABCA5Q8WWZ7 1642 aa33.02■■■□□ 2.88
EPHB4-207ENST00000489808 SYNJ2O15056 1496 aa32.98■■■□□ 2.87
EPHB4-207ENST00000489808 CHD1O14646 1710 aa32.97■■■□□ 2.87
EPHB4-207ENST00000489808 PBRM1Q86U86 1689 aa32.91■■■□□ 2.86
EPHB4-207ENST00000489808 TRIM41Q8WV44 630 aa32.85■■■□□ 2.85
EPHB4-207ENST00000489808 ERICH3Q5RHP9 1530 aa32.82■■■□□ 2.84
EPHB4-207ENST00000489808 FHAD1B1AJZ9 1412 aa32.8■■■□□ 2.84
EPHB4-207ENST00000489808 ARHGEF11O15085 1522 aa32.77■■■□□ 2.84
EPHB4-207ENST00000489808 KIF27Q86VH2 1401 aa32.75■■■□□ 2.83
EPHB4-207ENST00000489808 RIMBP3CA6NJZ7 1639 aa32.73■■■□□ 2.83
EPHB4-207ENST00000489808 RIMBP3BA6NNM3 1639 aa32.73■■■□□ 2.83
EPHB4-207ENST00000489808 RIMBP3Q9UFD9 1639 aa32.73■■■□□ 2.83
EPHB4-207ENST00000489808 GRIN2AQ12879 1464 aa32.73■■■□□ 2.83
EPHB4-207ENST00000489808 IGF1RP08069 1367 aa32.72■■■□□ 2.83
EPHB4-207ENST00000489808 ADAMTS12P58397 1594 aa32.72■■■□□ 2.83
EPHB4-207ENST00000489808 CLASP1Q7Z460 1538 aa32.72■■■□□ 2.83
EPHB4-207ENST00000489808 CYB5RLQ6IPT4 315 aa32.64■■■□□ 2.82
EPHB4-207ENST00000489808 NUP160Q12769 1436 aa32.62■■■□□ 2.81
EPHB4-207ENST00000489808 CEP170Q5SW79 1584 aa32.53■■■□□ 2.8
EPHB4-207ENST00000489808 ARAP1Q96P48 1450 aa32.51■■■□□ 2.79
EPHB4-207ENST00000489808 CARMIL1Q5VZK9 1371 aa32.49■■■□□ 2.79
EPHB4-207ENST00000489808 JPH4Q96JJ6 628 aa32.43■■■□□ 2.78
EPHB4-207ENST00000489808 RUSC2Q8N2Y8 1516 aa32.41■■■□□ 2.78
EPHB4-207ENST00000489808 CUL7Q14999 1698 aa32.4■■■□□ 2.78
EPHB4-207ENST00000489808 KIAA0586Q9BVV6 1533 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 265.5 ms