RNA–Protein interactions for RNA: ENST00000489324.1

FDPS-214, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 2

Gene FDPS, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-214ENST00000489324 NISCHQ9Y2I1 1504 aa23.25■■□□□ 1.31
FDPS-214ENST00000489324 CCDC180Q9P1Z9 1646 aa20.56■□□□□ 0.88
FDPS-214ENST00000489324 ABCC9O60706 1549 aa19.87■□□□□ 0.77
FDPS-214ENST00000489324 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
FDPS-214ENST00000489324 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
FDPS-214ENST00000489324 NACADO15069 1562 aa19.34■□□□□ 0.69
FDPS-214ENST00000489324 DCAF1Q9Y4B6 1507 aa19.32■□□□□ 0.68
FDPS-214ENST00000489324 DCAF8L2P0C7V8 631 aa19.32■□□□□ 0.68
FDPS-214ENST00000489324 RB1CC1Q8TDY2 1594 aa19.27■□□□□ 0.68
FDPS-214ENST00000489324 SCRIBQ14160 1630 aa18.71■□□□□ 0.58
FDPS-214ENST00000489324 UNC13AQ9UPW8 1703 aa18.67■□□□□ 0.58
FDPS-214ENST00000489324 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.572e-8■□□□□ 9.9
FDPS-214ENST00000489324 BICRAQ9NZM4 1560 aa18.62■□□□□ 0.57
FDPS-214ENST00000489324 SHROOM4Q9ULL8 1493 aa18.61■□□□□ 0.57
FDPS-214ENST00000489324 EIF4G1Q04637 1599 aaKnown RBP18.14■□□□□ 0.49
FDPS-214ENST00000489324 CECR2Q9BXF3 1484 aa18.04■□□□□ 0.48
FDPS-214ENST00000489324 DNAJC5BQ9UF47 199 aa18.04■□□□□ 0.48
FDPS-214ENST00000489324 BAZ1AQ9NRL2 1556 aaPredicted RBP18.02■□□□□ 0.48
FDPS-214ENST00000489324 CC2D2AQ9P2K1 1620 aa17.99■□□□□ 0.47
FDPS-214ENST00000489324 SMARCA4P51532 1647 aa17.96■□□□□ 0.47
FDPS-214ENST00000489324 MROH2BQ7Z745 1585 aa17.87■□□□□ 0.45
FDPS-214ENST00000489324 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
FDPS-214ENST00000489324 NCAPD3P42695 1498 aa17.86■□□□□ 0.45
FDPS-214ENST00000489324 ATAD2BQ9ULI0 1458 aa17.86■□□□□ 0.45
FDPS-214ENST00000489324 PEG3Q9GZU2 1588 aa17.83■□□□□ 0.45
FDPS-214ENST00000489324 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
FDPS-214ENST00000489324 HMGXB3Q12766 1538 aa17.76■□□□□ 0.43
FDPS-214ENST00000489324 BAZ1BQ9UIG0 1483 aaKnown RBP17.71■□□□□ 0.43
FDPS-214ENST00000489324 WIZO95785 1651 aa17.64■□□□□ 0.42
FDPS-214ENST00000489324 TOP2AP11388 1531 aaKnown RBP17.56■□□□□ 0.4
FDPS-214ENST00000489324 SUPT5HO00267 1087 aaKnown RBP17.46■□□□□ 0.39
FDPS-214ENST00000489324 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
FDPS-214ENST00000489324 CCDC88BA6NC98 1476 aa17.34■□□□□ 0.37
FDPS-214ENST00000489324 LAMC3Q9Y6N6 1575 aa17.31■□□□□ 0.36
FDPS-214ENST00000489324 CFTRP13569 1480 aa17.27■□□□□ 0.36
FDPS-214ENST00000489324 PDS5BQ9NTI5 1447 aa17.24■□□□□ 0.35
FDPS-214ENST00000489324 NESP48681 1621 aa17.24■□□□□ 0.35
FDPS-214ENST00000489324 ERCC6Q03468 1493 aa17.17■□□□□ 0.34
FDPS-214ENST00000489324 FANCD2Q9BXW9 1451 aa17.1■□□□□ 0.33
FDPS-214ENST00000489324 CEP164Q9UPV0 1460 aa17.06■□□□□ 0.32
FDPS-214ENST00000489324 PRDM2Q13029 1718 aa17.03■□□□□ 0.32
FDPS-214ENST00000489324 MRC2Q9UBG0 1479 aa17■□□□□ 0.31
FDPS-214ENST00000489324 KIF21AQ7Z4S6 1674 aa16.99■□□□□ 0.31
FDPS-214ENST00000489324 CUX2O14529 1486 aa16.96■□□□□ 0.31
FDPS-214ENST00000489324 ABCC8Q09428 1581 aa16.94■□□□□ 0.3
FDPS-214ENST00000489324 THOC2Q8NI27 1593 aaKnown RBP16.94■□□□□ 0.3
FDPS-214ENST00000489324 WDR62O43379 1518 aa16.93■□□□□ 0.3
FDPS-214ENST00000489324 URB2Q14146 1524 aaKnown RBP16.88■□□□□ 0.29
FDPS-214ENST00000489324 TOPBP1Q92547 1522 aa16.84■□□□□ 0.29
FDPS-214ENST00000489324 DNMBPQ6XZF7 1577 aa16.84■□□□□ 0.29
FDPS-214ENST00000489324 WRNQ14191 1432 aaPredicted RBP eCLIP16.79■□□□□ 0.28
FDPS-214ENST00000489324 CUX1P39880 1505 aa16.76■□□□□ 0.27
FDPS-214ENST00000489324 IFT140Q96RY7 1462 aa16.73■□□□□ 0.27
FDPS-214ENST00000489324 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
FDPS-214ENST00000489324 TOP2BQ02880 1626 aa16.7■□□□□ 0.26
FDPS-214ENST00000489324 FGD5Q6ZNL6 1462 aa16.69■□□□□ 0.26
FDPS-214ENST00000489324 SOGA1O94964 1423 aa16.68■□□□□ 0.26
FDPS-214ENST00000489324 BIVM-ERCC5R4GMW8 1640 aa16.67■□□□□ 0.26
FDPS-214ENST00000489324 SYNJ1O43426 1573 aa16.65■□□□□ 0.26
FDPS-214ENST00000489324 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
FDPS-214ENST00000489324 TARBP1Q13395 1621 aaKnown RBP16.6■□□□□ 0.25
FDPS-214ENST00000489324 WDR97A6NE52 1622 aa16.59■□□□□ 0.25
FDPS-214ENST00000489324 ABCA10Q8WWZ4 1543 aa16.58■□□□□ 0.24
FDPS-214ENST00000489324 TRIM41Q8WV44 630 aa16.56■□□□□ 0.24
FDPS-214ENST00000489324 ZNF608Q9ULD9 1512 aaPredicted RBP16.55■□□□□ 0.24
FDPS-214ENST00000489324 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.24
FDPS-214ENST00000489324 AQRO60306 1485 aaKnown RBP eCLIP16.51■□□□□ 0.232e-15■■■■■ 31
FDPS-214ENST00000489324 EIF4G3O43432 1585 aaKnown RBP16.48■□□□□ 0.23
FDPS-214ENST00000489324 GAPVD1Q14C86 1478 aa16.48■□□□□ 0.23
FDPS-214ENST00000489324 GRIN2BQ13224 1484 aa16.47■□□□□ 0.23
FDPS-214ENST00000489324 CHIC1Q5VXU3 224 aa16.46■□□□□ 0.23
FDPS-214ENST00000489324 KIF27Q86VH2 1401 aa16.45■□□□□ 0.22
FDPS-214ENST00000489324 ABCA5Q8WWZ7 1642 aa16.44■□□□□ 0.22
FDPS-214ENST00000489324 MAGI1Q96QZ7 1491 aaPredicted RBP16.41■□□□□ 0.22
FDPS-214ENST00000489324 ERICH3Q5RHP9 1530 aa16.4■□□□□ 0.22
FDPS-214ENST00000489324 SNAPC4Q5SXM2 1469 aa16.36■□□□□ 0.21
FDPS-214ENST00000489324 IGF1RP08069 1367 aa16.35■□□□□ 0.21
FDPS-214ENST00000489324 FHAD1B1AJZ9 1412 aa16.33■□□□□ 0.2
FDPS-214ENST00000489324 SYNJ2O15056 1496 aa16.33■□□□□ 0.2
FDPS-214ENST00000489324 PBRM1Q86U86 1689 aa16.33■□□□□ 0.2
FDPS-214ENST00000489324 EEA1Q15075 1411 aa16.32■□□□□ 0.2
FDPS-214ENST00000489324 CHMP7Q8WUX9 453 aaPredicted RBP16.32■□□□□ 0.2
FDPS-214ENST00000489324 OSCARQ8IYS5 282 aa16.31■□□□□ 0.2
FDPS-214ENST00000489324 FBLN2P98095 1184 aa16.28■□□□□ 0.2
FDPS-214ENST00000489324 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
FDPS-214ENST00000489324 CARMIL1Q5VZK9 1371 aa16.26■□□□□ 0.19
FDPS-214ENST00000489324 CUL7Q14999 1698 aa16.25■□□□□ 0.19
FDPS-214ENST00000489324 RUSC2Q8N2Y8 1516 aa16.24■□□□□ 0.19
FDPS-214ENST00000489324 CSRNP3Q8WYN3 585 aa16.23■□□□□ 0.19
FDPS-214ENST00000489324 GRIN2AQ12879 1464 aa16.22■□□□□ 0.19
FDPS-214ENST00000489324 DNAJC5Q9H3Z4 198 aa16.18■□□□□ 0.18
FDPS-214ENST00000489324 CHD1O14646 1710 aa16.18■□□□□ 0.18
FDPS-214ENST00000489324 NUP160Q12769 1436 aa16.18■□□□□ 0.18
FDPS-214ENST00000489324 RAPGEF2Q9Y4G8 1499 aa16.17■□□□□ 0.18
FDPS-214ENST00000489324 PRXQ9BXM0 1461 aa16.16■□□□□ 0.18
FDPS-214ENST00000489324 FAM9AQ8IZU1 332 aaPredicted RBP16.11■□□□□ 0.17
FDPS-214ENST00000489324 CLASP1Q7Z460 1538 aa16.1■□□□□ 0.17
FDPS-214ENST00000489324 KIAA0586Q9BVV6 1533 aa16.09■□□□□ 0.17
FDPS-214ENST00000489324 CEP170Q5SW79 1584 aa16.09■□□□□ 0.17
FDPS-214ENST00000489324 KIF21BO75037 1637 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms