RNA–Protein interactions for RNA: ENST00000489303.1

LMO4-203, Transcript of LIM domain only 4, humanhuman

TSL 2

Gene LMO4, Length 952 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-203ENST00000489303 NISCHQ9Y2I1 1504 aa33.12■■■□□ 2.89
LMO4-203ENST00000489303 ABCC9O60706 1549 aa29.78■■■□□ 2.36
LMO4-203ENST00000489303 CCDC180Q9P1Z9 1646 aa29.63■■■□□ 2.33
LMO4-203ENST00000489303 RB1CC1Q8TDY2 1594 aa28.21■■■□□ 2.11
LMO4-203ENST00000489303 DCAF8L2P0C7V8 631 aa28.04■■■□□ 2.08
LMO4-203ENST00000489303 DNAJC5BQ9UF47 199 aa28.02■■■□□ 2.08
LMO4-203ENST00000489303 NACADO15069 1562 aa28.01■■■□□ 2.07
LMO4-203ENST00000489303 PABPN1Q86U42 306 aaKnown RBP eCLIP27.77■■■□□ 2.04
LMO4-203ENST00000489303 UNC13AQ9UPW8 1703 aa27.7■■■□□ 2.02
LMO4-203ENST00000489303 MYO15BQ96JP2 1530 aa27.57■■■□□ 2
LMO4-203ENST00000489303 BICRAQ9NZM4 1560 aa27.52■■■□□ 2
LMO4-203ENST00000489303 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
LMO4-203ENST00000489303 DCAF1Q9Y4B6 1507 aa27.26■■□□□ 1.96
LMO4-203ENST00000489303 SCRIBQ14160 1630 aa27.14■■□□□ 1.94
LMO4-203ENST00000489303 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
LMO4-203ENST00000489303 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
LMO4-203ENST00000489303 EIF4G1Q04637 1599 aaKnown RBP26.79■■□□□ 1.88
LMO4-203ENST00000489303 CECR2Q9BXF3 1484 aa26.76■■□□□ 1.87
LMO4-203ENST00000489303 NCAPD3P42695 1498 aa25.9■■□□□ 1.74
LMO4-203ENST00000489303 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
LMO4-203ENST00000489303 SMARCA4P51532 1647 aa25.84■■□□□ 1.73
LMO4-203ENST00000489303 SMARCA2P51531 1590 aa25.71■■□□□ 1.71
LMO4-203ENST00000489303 HMGXB3Q12766 1538 aa25.68■■□□□ 1.7
LMO4-203ENST00000489303 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
LMO4-203ENST00000489303 NESP48681 1621 aa25.63■■□□□ 1.69
LMO4-203ENST00000489303 ERCC6Q03468 1493 aa25.61■■□□□ 1.69
LMO4-203ENST00000489303 MROH2BQ7Z745 1585 aa25.6■■□□□ 1.69
LMO4-203ENST00000489303 BAZ1BQ9UIG0 1483 aaKnown RBP25.59■■□□□ 1.69
LMO4-203ENST00000489303 DNAJC5Q9H3Z4 198 aa25.56■■□□□ 1.68
LMO4-203ENST00000489303 PEG3Q9GZU2 1588 aa25.53■■□□□ 1.68
LMO4-203ENST00000489303 CUX2O14529 1486 aa25.51■■□□□ 1.67
LMO4-203ENST00000489303 WIZO95785 1651 aa25.29■■□□□ 1.64
LMO4-203ENST00000489303 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
LMO4-203ENST00000489303 LAMC3Q9Y6N6 1575 aa25.28■■□□□ 1.64
LMO4-203ENST00000489303 KIF21AQ7Z4S6 1674 aa25.24■■□□□ 1.63
LMO4-203ENST00000489303 CADPSQ9ULU8 1353 aa25.13■■□□□ 1.61
LMO4-203ENST00000489303 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
LMO4-203ENST00000489303 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
LMO4-203ENST00000489303 MRC2Q9UBG0 1479 aa24.96■■□□□ 1.59
LMO4-203ENST00000489303 WDR62O43379 1518 aa24.9■■□□□ 1.58
LMO4-203ENST00000489303 TOP2AP11388 1531 aaKnown RBP24.89■■□□□ 1.57
LMO4-203ENST00000489303 FANCD2Q9BXW9 1451 aa24.86■■□□□ 1.57
LMO4-203ENST00000489303 CEP164Q9UPV0 1460 aa24.85■■□□□ 1.57
LMO4-203ENST00000489303 CFTRP13569 1480 aa24.84■■□□□ 1.57
LMO4-203ENST00000489303 URB2Q14146 1524 aaKnown RBP24.71■■□□□ 1.55
LMO4-203ENST00000489303 CCDC88BA6NC98 1476 aa24.67■■□□□ 1.54
LMO4-203ENST00000489303 PRDM2Q13029 1718 aa24.56■■□□□ 1.52
LMO4-203ENST00000489303 TRIM41Q8WV44 630 aa24.53■■□□□ 1.52
LMO4-203ENST00000489303 ZNF608Q9ULD9 1512 aaPredicted RBP24.43■■□□□ 1.5
LMO4-203ENST00000489303 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
LMO4-203ENST00000489303 OSCARQ8IYS5 282 aa24.39■■□□□ 1.49
LMO4-203ENST00000489303 IFT140Q96RY7 1462 aa24.33■■□□□ 1.49
LMO4-203ENST00000489303 SUPT5HO00267 1087 aaKnown RBP24.29■■□□□ 1.48
LMO4-203ENST00000489303 DNMBPQ6XZF7 1577 aa24.28■■□□□ 1.48
LMO4-203ENST00000489303 EIF4G3O43432 1585 aaKnown RBP24.23■■□□□ 1.47
LMO4-203ENST00000489303 ABCC8Q09428 1581 aa24.22■■□□□ 1.47
LMO4-203ENST00000489303 AQRO60306 1485 aaKnown RBP eCLIP24.2■■□□□ 1.47
LMO4-203ENST00000489303 TARBP1Q13395 1621 aaKnown RBP24.2■■□□□ 1.46
LMO4-203ENST00000489303 POLA1P09884 1462 aaPredicted RBP24.16■■□□□ 1.46
LMO4-203ENST00000489303 RAD54L2Q9Y4B4 1467 aa24.14■■□□□ 1.46
LMO4-203ENST00000489303 RIMBP3CA6NJZ7 1639 aa24.13■■□□□ 1.45
LMO4-203ENST00000489303 RIMBP3BA6NNM3 1639 aa24.13■■□□□ 1.45
LMO4-203ENST00000489303 RIMBP3Q9UFD9 1639 aa24.13■■□□□ 1.45
LMO4-203ENST00000489303 CHD1O14646 1710 aa24.07■■□□□ 1.44
LMO4-203ENST00000489303 ARHGEF11O15085 1522 aa24.05■■□□□ 1.44
LMO4-203ENST00000489303 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
LMO4-203ENST00000489303 SOGA1O94964 1423 aa24.04■■□□□ 1.44
LMO4-203ENST00000489303 CUX1P39880 1505 aa24.03■■□□□ 1.44
LMO4-203ENST00000489303 FGD5Q6ZNL6 1462 aa24.02■■□□□ 1.44
LMO4-203ENST00000489303 FBLN2P98095 1184 aa24.01■■□□□ 1.43
LMO4-203ENST00000489303 SNAPC4Q5SXM2 1469 aa23.91■■□□□ 1.42
LMO4-203ENST00000489303 CYB5RLQ6IPT4 315 aa23.9■■□□□ 1.42
LMO4-203ENST00000489303 ARAP1Q96P48 1450 aa23.84■■□□□ 1.41
LMO4-203ENST00000489303 WDR97A6NE52 1622 aa23.84■■□□□ 1.41
LMO4-203ENST00000489303 GRIN2BQ13224 1484 aa23.79■■□□□ 1.4
LMO4-203ENST00000489303 CHMP7Q8WUX9 453 aaPredicted RBP23.78■■□□□ 1.4
LMO4-203ENST00000489303 CLASP1Q7Z460 1538 aa23.76■■□□□ 1.39
LMO4-203ENST00000489303 MAGI1Q96QZ7 1491 aaPredicted RBP23.75■■□□□ 1.39
LMO4-203ENST00000489303 PBRM1Q86U86 1689 aa23.74■■□□□ 1.39
LMO4-203ENST00000489303 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
LMO4-203ENST00000489303 SYNJ2O15056 1496 aa23.71■■□□□ 1.39
LMO4-203ENST00000489303 ABCA10Q8WWZ4 1543 aa23.7■■□□□ 1.38
LMO4-203ENST00000489303 ABCA5Q8WWZ7 1642 aa23.69■■□□□ 1.38
LMO4-203ENST00000489303 SYNJ1O43426 1573 aa23.69■■□□□ 1.38
LMO4-203ENST00000489303 TRHP20396 242 aaPredicted RBP23.61■■□□□ 1.37
LMO4-203ENST00000489303 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
LMO4-203ENST00000489303 TOP2BQ02880 1626 aa23.59■■□□□ 1.37
LMO4-203ENST00000489303 WRNQ14191 1432 aaPredicted RBP eCLIP23.59■■□□□ 1.37
LMO4-203ENST00000489303 GRIN2AQ12879 1464 aa23.51■■□□□ 1.35
LMO4-203ENST00000489303 ADAMTS12P58397 1594 aa23.51■■□□□ 1.35
LMO4-203ENST00000489303 ERCC6L2Q5T890 1561 aa23.51■■□□□ 1.35
LMO4-203ENST00000489303 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
LMO4-203ENST00000489303 NUP160Q12769 1436 aa23.42■■□□□ 1.34
LMO4-203ENST00000489303 FHAD1B1AJZ9 1412 aa23.4■■□□□ 1.34
LMO4-203ENST00000489303 ERICH3Q5RHP9 1530 aa23.38■■□□□ 1.33
LMO4-203ENST00000489303 SHROOM2Q13796 1616 aa23.32■■□□□ 1.32
LMO4-203ENST00000489303 PRG4Q92954 1404 aaPredicted RBP23.23■■□□□ 1.31
LMO4-203ENST00000489303 JPH4Q96JJ6 628 aa23.2■■□□□ 1.3
LMO4-203ENST00000489303 RUSC2Q8N2Y8 1516 aa23.18■■□□□ 1.3
LMO4-203ENST00000489303 IGF1RP08069 1367 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms