RNA–Protein interactions for RNA: ENST00000488897.5

COL16A1-215, Transcript of collagen type XVI alpha 1 chain, human

TSL 1 (best)

Gene COL16A1, Length 2,423 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL16A1-215	ENST00000488897	NISCH	Q9Y2I1	1504 aa		41.41	■■■■■ 4.22
COL16A1-215	ENST00000488897	CCDC180	Q9P1Z9	1646 aa		36.22	■■■■□ 3.39
COL16A1-215	ENST00000488897	ABCC9	O60706	1549 aa		35.49	■■■■□ 3.27
COL16A1-215	ENST00000488897	DCAF8L2	P0C7V8	631 aa		35.01	■■■■□ 3.2
COL16A1-215	ENST00000488897	ZCCHC6	Q5VYS8	1495 aa	Known RBP	34.57	■■■■□ 3.13
COL16A1-215	ENST00000488897	NACAD	O15069	1562 aa		34	■■■■□ 3.03
COL16A1-215	ENST00000488897	RB1CC1	Q8TDY2	1594 aa		33.96	■■■■□ 3.03
COL16A1-215	ENST00000488897	DCAF1	Q9Y4B6	1507 aa		33.95	■■■■□ 3.03
COL16A1-215	ENST00000488897	MYO15B	Q96JP2	1530 aa		33.79	■■■■□ 3
COL16A1-215	ENST00000488897	SHROOM4	Q9ULL8	1493 aa		33.75	■■■□□ 2.99
COL16A1-215	ENST00000488897	SCRIB	Q14160	1630 aa		33.62	■■■□□ 2.97
COL16A1-215	ENST00000488897	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.49	■■■□□ 2.95	1e-6	■■■■□ 24.8
COL16A1-215	ENST00000488897	UNC13A	Q9UPW8	1703 aa		33.4	■■■□□ 2.94
COL16A1-215	ENST00000488897	BICRA	Q9NZM4	1560 aa		33.1	■■■□□ 2.89
COL16A1-215	ENST00000488897	CECR2	Q9BXF3	1484 aa		32.49	■■■□□ 2.79
COL16A1-215	ENST00000488897	DNAJC5B	Q9UF47	199 aa		32.24	■■■□□ 2.75
COL16A1-215	ENST00000488897	EIF4G1	Q04637	1599 aa	Known RBP	32.15	■■■□□ 2.74
COL16A1-215	ENST00000488897	MROH2B	Q7Z745	1585 aa		32.11	■■■□□ 2.73
COL16A1-215	ENST00000488897	SUPT5H	O00267	1087 aa	Known RBP	32.04	■■■□□ 2.72
COL16A1-215	ENST00000488897	SMARCA4	P51532	1647 aa		31.99	■■■□□ 2.71
COL16A1-215	ENST00000488897	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.96	■■■□□ 2.71
COL16A1-215	ENST00000488897	CC2D2A	Q9P2K1	1620 aa		31.93	■■■□□ 2.7
COL16A1-215	ENST00000488897	RSF1	Q96T23	1441 aa	Predicted RBP	31.92	■■■□□ 2.7
COL16A1-215	ENST00000488897	WIZ	O95785	1651 aa		31.83	■■■□□ 2.69
COL16A1-215	ENST00000488897	ATAD2B	Q9ULI0	1458 aa		31.72	■■■□□ 2.67
COL16A1-215	ENST00000488897	SMARCA2	P51531	1590 aa		31.51	■■■□□ 2.64
COL16A1-215	ENST00000488897	BAZ1B	Q9UIG0	1483 aa	Known RBP	31.49	■■■□□ 2.63
COL16A1-215	ENST00000488897	NCAPD3	P42695	1498 aa		31.47	■■■□□ 2.63
COL16A1-215	ENST00000488897	PEG3	Q9GZU2	1588 aa		31.46	■■■□□ 2.63
COL16A1-215	ENST00000488897	HMGXB3	Q12766	1538 aa		31.27	■■■□□ 2.6
COL16A1-215	ENST00000488897	TOP2A	P11388	1531 aa	Known RBP	31.25	■■■□□ 2.59
COL16A1-215	ENST00000488897	CCDC88B	A6NC98	1476 aa		31.1	■■■□□ 2.57
COL16A1-215	ENST00000488897	NES	P48681	1621 aa		30.94	■■■□□ 2.54
COL16A1-215	ENST00000488897	CADPS	Q9ULU8	1353 aa		30.71	■■■□□ 2.51
COL16A1-215	ENST00000488897	CFTR	P13569	1480 aa		30.6	■■■□□ 2.49
COL16A1-215	ENST00000488897	LAMC3	Q9Y6N6	1575 aa		30.48	■■■□□ 2.47
COL16A1-215	ENST00000488897	FANCD2	Q9BXW9	1451 aa		30.4	■■■□□ 2.46
COL16A1-215	ENST00000488897	ERCC6	Q03468	1493 aa		30.39	■■■□□ 2.46
COL16A1-215	ENST00000488897	KIF21A	Q7Z4S6	1674 aa		30.38	■■■□□ 2.45
COL16A1-215	ENST00000488897	CHIC1	Q5VXU3	224 aa		30.37	■■■□□ 2.45
COL16A1-215	ENST00000488897	PDS5B	Q9NTI5	1447 aa		30.34	■■■□□ 2.45
COL16A1-215	ENST00000488897	ABCC8	Q09428	1581 aa		30.33	■■■□□ 2.45
COL16A1-215	ENST00000488897	CEP164	Q9UPV0	1460 aa		30.23	■■■□□ 2.43
COL16A1-215	ENST00000488897	PRDM2	Q13029	1718 aa		30.21	■■■□□ 2.43
COL16A1-215	ENST00000488897	URB2	Q14146	1524 aa	Known RBP	30.11	■■■□□ 2.41
COL16A1-215	ENST00000488897	WRN	Q14191	1432 aa	Predicted RBP eCLIP	30.04	■■■□□ 2.4
COL16A1-215	ENST00000488897	CUX1	P39880	1505 aa		30.03	■■■□□ 2.4
COL16A1-215	ENST00000488897	MRC2	Q9UBG0	1479 aa		30.02	■■■□□ 2.4
COL16A1-215	ENST00000488897	SYNJ1	O43426	1573 aa		30	■■■□□ 2.39
COL16A1-215	ENST00000488897	THOC2	Q8NI27	1593 aa	Known RBP	29.99	■■■□□ 2.39
COL16A1-215	ENST00000488897	TRIM41	Q8WV44	630 aa		29.97	■■■□□ 2.39
COL16A1-215	ENST00000488897	TOPBP1	Q92547	1522 aa		29.96	■■■□□ 2.39
COL16A1-215	ENST00000488897	DNMBP	Q6XZF7	1577 aa		29.85	■■■□□ 2.37
COL16A1-215	ENST00000488897	WDR62	O43379	1518 aa		29.85	■■■□□ 2.37
COL16A1-215	ENST00000488897	RAD54L2	Q9Y4B4	1467 aa		29.84	■■■□□ 2.37
COL16A1-215	ENST00000488897	FGD5	Q6ZNL6	1462 aa		29.83	■■■□□ 2.37
COL16A1-215	ENST00000488897	POLA1	P09884	1462 aa	Predicted RBP	29.79	■■■□□ 2.36
COL16A1-215	ENST00000488897	TOP2B	Q02880	1626 aa		29.78	■■■□□ 2.36
COL16A1-215	ENST00000488897	CUX2	O14529	1486 aa		29.75	■■■□□ 2.35
COL16A1-215	ENST00000488897	BIVM-ERCC5	R4GMW8	1640 aa		29.71	■■■□□ 2.35
COL16A1-215	ENST00000488897	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.71	■■■□□ 2.35
COL16A1-215	ENST00000488897	SOGA1	O94964	1423 aa		29.71	■■■□□ 2.35
COL16A1-215	ENST00000488897	HRC	P23327	699 aa		29.66	■■■□□ 2.34
COL16A1-215	ENST00000488897	TDRD9	Q8NDG6	1382 aa	Known RBP	29.66	■■■□□ 2.34
COL16A1-215	ENST00000488897	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.64	■■■□□ 2.33
COL16A1-215	ENST00000488897	RUSC2	Q8N2Y8	1516 aa		29.61	■■■□□ 2.33
COL16A1-215	ENST00000488897	AQR	O60306	1485 aa	Known RBP eCLIP	29.58	■■■□□ 2.33
COL16A1-215	ENST00000488897	EHMT2	Q96KQ7	1210 aa		29.56	■■■□□ 2.32
COL16A1-215	ENST00000488897	TARBP1	Q13395	1621 aa	Known RBP	29.54	■■■□□ 2.32
COL16A1-215	ENST00000488897	IFT140	Q96RY7	1462 aa		29.49	■■■□□ 2.31
COL16A1-215	ENST00000488897	PCGF6	Q9BYE7	350 aa		29.49	■■■□□ 2.31
COL16A1-215	ENST00000488897	ABCA10	Q8WWZ4	1543 aa		29.41	■■■□□ 2.3
COL16A1-215	ENST00000488897	LOC105371045	A0A1W2PR82	267 aa		29.37	■■■□□ 2.29
COL16A1-215	ENST00000488897	WDR97	A6NE52	1622 aa		29.36	■■■□□ 2.29
COL16A1-215	ENST00000488897	EIF4G3	O43432	1585 aa	Known RBP	29.34	■■■□□ 2.29
COL16A1-215	ENST00000488897	GAPVD1	Q14C86	1478 aa		29.32	■■■□□ 2.28
COL16A1-215	ENST00000488897	KIF27	Q86VH2	1401 aa		29.28	■■■□□ 2.28
COL16A1-215	ENST00000488897	FBLN2	P98095	1184 aa		29.28	■■■□□ 2.28
COL16A1-215	ENST00000488897	ABCA5	Q8WWZ7	1642 aa		29.24	■■■□□ 2.27
COL16A1-215	ENST00000488897	IGF1R	P08069	1367 aa		29.23	■■■□□ 2.27
COL16A1-215	ENST00000488897	CSRNP3	Q8WYN3	585 aa		29.19	■■■□□ 2.26
COL16A1-215	ENST00000488897	SNAPC4	Q5SXM2	1469 aa		29.16	■■■□□ 2.26
COL16A1-215	ENST00000488897	GRIN2B	Q13224	1484 aa		29.15	■■■□□ 2.26
COL16A1-215	ENST00000488897	PBRM1	Q86U86	1689 aa		29.14	■■■□□ 2.26
COL16A1-215	ENST00000488897	CHMP7	Q8WUX9	453 aa	Predicted RBP	29.06	■■■□□ 2.24
COL16A1-215	ENST00000488897	CARMIL1	Q5VZK9	1371 aa		29.05	■■■□□ 2.24
COL16A1-215	ENST00000488897	TRIM26	Q12899	539 aa	Predicted RBP	29.03	■■■□□ 2.24
COL16A1-215	ENST00000488897	RANGAP1	P46060	587 aa	Predicted RBP	29	■■■□□ 2.23
COL16A1-215	ENST00000488897	ERICH3	Q5RHP9	1530 aa		28.99	■■■□□ 2.23
COL16A1-215	ENST00000488897	RAPGEF2	Q9Y4G8	1499 aa		28.96	■■■□□ 2.23
COL16A1-215	ENST00000488897	ADAMTS12	P58397	1594 aa		28.93	■■■□□ 2.22
COL16A1-215	ENST00000488897	EEA1	Q15075	1411 aa		28.92	■■■□□ 2.22
COL16A1-215	ENST00000488897	FHAD1	B1AJZ9	1412 aa		28.91	■■■□□ 2.22
COL16A1-215	ENST00000488897	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.91	■■■□□ 2.22
COL16A1-215	ENST00000488897	CHD1	O14646	1710 aa		28.89	■■■□□ 2.22
COL16A1-215	ENST00000488897	PRX	Q9BXM0	1461 aa		28.89	■■■□□ 2.21
COL16A1-215	ENST00000488897	UBTF	P17480	764 aa	Known RBP	28.89	■■■□□ 2.21
COL16A1-215	ENST00000488897	SYNJ2	O15056	1496 aa		28.88	■■■□□ 2.21
COL16A1-215	ENST00000488897	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.84	■■■□□ 2.21
COL16A1-215	ENST00000488897	GRIN2A	Q12879	1464 aa		28.82	■■■□□ 2.2

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms