RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 NISCHQ9Y2I1 1504 aa26.7■■□□□ 1.87
UBE4B-210ENST00000488228 CCDC180Q9P1Z9 1646 aa23.77■■□□□ 1.4
UBE4B-210ENST00000488228 ABCC9O60706 1549 aa22.98■■□□□ 1.27
UBE4B-210ENST00000488228 ZCCHC6Q5VYS8 1495 aaKnown RBP22.33■■□□□ 1.16
UBE4B-210ENST00000488228 RB1CC1Q8TDY2 1594 aa22.21■■□□□ 1.15
UBE4B-210ENST00000488228 NACADO15069 1562 aa22.19■■□□□ 1.14
UBE4B-210ENST00000488228 DCAF8L2P0C7V8 631 aa22.11■■□□□ 1.13
UBE4B-210ENST00000488228 MYO15BQ96JP2 1530 aa22.08■■□□□ 1.13
UBE4B-210ENST00000488228 DCAF1Q9Y4B6 1507 aa22.08■■□□□ 1.13
UBE4B-210ENST00000488228 UNC13AQ9UPW8 1703 aa21.88■■□□□ 1.09
UBE4B-210ENST00000488228 SCRIBQ14160 1630 aa21.72■■□□□ 1.07
UBE4B-210ENST00000488228 BICRAQ9NZM4 1560 aa21.57■■□□□ 1.04
UBE4B-210ENST00000488228 PABPN1Q86U42 306 aaKnown RBP eCLIP21.42■■□□□ 1.02
UBE4B-210ENST00000488228 SHROOM4Q9ULL8 1493 aa21.27■■□□□ 1
UBE4B-210ENST00000488228 EIF4G1Q04637 1599 aaKnown RBP20.96■□□□□ 0.95
UBE4B-210ENST00000488228 CC2D2AQ9P2K1 1620 aa20.85■□□□□ 0.93
UBE4B-210ENST00000488228 DNAJC5BQ9UF47 199 aa20.81■□□□□ 0.92
UBE4B-210ENST00000488228 CECR2Q9BXF3 1484 aa20.8■□□□□ 0.92
UBE4B-210ENST00000488228 SMARCA4P51532 1647 aa20.76■□□□□ 0.91
UBE4B-210ENST00000488228 BAZ1AQ9NRL2 1556 aaPredicted RBP20.7■□□□□ 0.9
UBE4B-210ENST00000488228 MROH2BQ7Z745 1585 aa20.61■□□□□ 0.89
UBE4B-210ENST00000488228 SMARCA2P51531 1590 aa20.51■□□□□ 0.87
UBE4B-210ENST00000488228 PEG3Q9GZU2 1588 aa20.51■□□□□ 0.87
UBE4B-210ENST00000488228 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
UBE4B-210ENST00000488228 WIZO95785 1651 aa20.46■□□□□ 0.87
UBE4B-210ENST00000488228 HMGXB3Q12766 1538 aa20.43■□□□□ 0.86
UBE4B-210ENST00000488228 NCAPD3P42695 1498 aa20.42■□□□□ 0.86
UBE4B-210ENST00000488228 RSF1Q96T23 1441 aaPredicted RBP20.38■□□□□ 0.85
UBE4B-210ENST00000488228 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
UBE4B-210ENST00000488228 TOP2AP11388 1531 aaKnown RBP20.22■□□□□ 0.83
UBE4B-210ENST00000488228 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
UBE4B-210ENST00000488228 NESP48681 1621 aa19.97■□□□□ 0.79
UBE4B-210ENST00000488228 LAMC3Q9Y6N6 1575 aa19.93■□□□□ 0.78
UBE4B-210ENST00000488228 CCDC88BA6NC98 1476 aa19.92■□□□□ 0.78
UBE4B-210ENST00000488228 PRDM2Q13029 1718 aa19.88■□□□□ 0.77
UBE4B-210ENST00000488228 KIF21AQ7Z4S6 1674 aa19.85■□□□□ 0.77
UBE4B-210ENST00000488228 CADPSQ9ULU8 1353 aa19.82■□□□□ 0.76
UBE4B-210ENST00000488228 CFTRP13569 1480 aa19.78■□□□□ 0.76
UBE4B-210ENST00000488228 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
UBE4B-210ENST00000488228 THOC2Q8NI27 1593 aaKnown RBP19.7■□□□□ 0.74
UBE4B-210ENST00000488228 PDS5BQ9NTI5 1447 aa19.69■□□□□ 0.74
UBE4B-210ENST00000488228 FANCD2Q9BXW9 1451 aa19.66■□□□□ 0.74
UBE4B-210ENST00000488228 CEP164Q9UPV0 1460 aa19.64■□□□□ 0.73
UBE4B-210ENST00000488228 MRC2Q9UBG0 1479 aa19.57■□□□□ 0.72
UBE4B-210ENST00000488228 WDR62O43379 1518 aa19.53■□□□□ 0.72
UBE4B-210ENST00000488228 URB2Q14146 1524 aaKnown RBP19.49■□□□□ 0.71
UBE4B-210ENST00000488228 CUX2O14529 1486 aa19.48■□□□□ 0.71
UBE4B-210ENST00000488228 DNMBPQ6XZF7 1577 aa19.42■□□□□ 0.7
UBE4B-210ENST00000488228 TOPBP1Q92547 1522 aa19.39■□□□□ 0.69
UBE4B-210ENST00000488228 ABCC8Q09428 1581 aa19.35■□□□□ 0.69
UBE4B-210ENST00000488228 CUX1P39880 1505 aa19.35■□□□□ 0.69
UBE4B-210ENST00000488228 SYNJ1O43426 1573 aa19.28■□□□□ 0.68
UBE4B-210ENST00000488228 BIVM-ERCC5R4GMW8 1640 aa19.28■□□□□ 0.68
UBE4B-210ENST00000488228 POLA1P09884 1462 aaPredicted RBP19.24■□□□□ 0.67
UBE4B-210ENST00000488228 TOP2BQ02880 1626 aa19.24■□□□□ 0.67
UBE4B-210ENST00000488228 FGD5Q6ZNL6 1462 aa19.23■□□□□ 0.67
UBE4B-210ENST00000488228 WRNQ14191 1432 aaPredicted RBP eCLIP19.23■□□□□ 0.67
UBE4B-210ENST00000488228 TARBP1Q13395 1621 aaKnown RBP19.22■□□□□ 0.67
UBE4B-210ENST00000488228 WDR97A6NE52 1622 aa19.19■□□□□ 0.66
UBE4B-210ENST00000488228 IFT140Q96RY7 1462 aa19.18■□□□□ 0.66
UBE4B-210ENST00000488228 RAD54L2Q9Y4B4 1467 aa19.15■□□□□ 0.66
UBE4B-210ENST00000488228 EIF4G3O43432 1585 aaKnown RBP19.15■□□□□ 0.66
UBE4B-210ENST00000488228 ZNF608Q9ULD9 1512 aaPredicted RBP19.12■□□□□ 0.65
UBE4B-210ENST00000488228 SOGA1O94964 1423 aa19.08■□□□□ 0.64
UBE4B-210ENST00000488228 PBRM1Q86U86 1689 aa19.03■□□□□ 0.64
UBE4B-210ENST00000488228 ABCA5Q8WWZ7 1642 aa19.03■□□□□ 0.64
UBE4B-210ENST00000488228 ABCA10Q8WWZ4 1543 aa19.02■□□□□ 0.64
UBE4B-210ENST00000488228 AQRO60306 1485 aaKnown RBP eCLIP18.99■□□□□ 0.631e-6■■■■□ 20.9
UBE4B-210ENST00000488228 TDRD9Q8NDG6 1382 aaKnown RBP18.96■□□□□ 0.63
UBE4B-210ENST00000488228 CHD1O14646 1710 aa18.91■□□□□ 0.62
UBE4B-210ENST00000488228 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
UBE4B-210ENST00000488228 SNAPC4Q5SXM2 1469 aa18.88■□□□□ 0.61
UBE4B-210ENST00000488228 GRIN2BQ13224 1484 aa18.87■□□□□ 0.61
UBE4B-210ENST00000488228 ADAMTS12P58397 1594 aa18.84■□□□□ 0.61
UBE4B-210ENST00000488228 MAGI1Q96QZ7 1491 aaPredicted RBP18.82■□□□□ 0.6
UBE4B-210ENST00000488228 TRIM41Q8WV44 630 aa18.81■□□□□ 0.6
UBE4B-210ENST00000488228 ERICH3Q5RHP9 1530 aa18.8■□□□□ 0.6
UBE4B-210ENST00000488228 KIF27Q86VH2 1401 aa18.78■□□□□ 0.6
UBE4B-210ENST00000488228 CUL7Q14999 1698 aa18.75■□□□□ 0.59
UBE4B-210ENST00000488228 SYNJ2O15056 1496 aa18.74■□□□□ 0.59
UBE4B-210ENST00000488228 RUSC2Q8N2Y8 1516 aa18.74■□□□□ 0.59
UBE4B-210ENST00000488228 CHIC1Q5VXU3 224 aa18.73■□□□□ 0.59
UBE4B-210ENST00000488228 FHAD1B1AJZ9 1412 aa18.67■□□□□ 0.58
UBE4B-210ENST00000488228 GRIN2AQ12879 1464 aa18.67■□□□□ 0.58
UBE4B-210ENST00000488228 FBLN2P98095 1184 aa18.66■□□□□ 0.58
UBE4B-210ENST00000488228 IGF1RP08069 1367 aa18.64■□□□□ 0.57
UBE4B-210ENST00000488228 CEP170Q5SW79 1584 aa18.64■□□□□ 0.57
UBE4B-210ENST00000488228 CLASP1Q7Z460 1538 aa18.62■□□□□ 0.57
UBE4B-210ENST00000488228 CHMP7Q8WUX9 453 aaPredicted RBP18.61■□□□□ 0.57
UBE4B-210ENST00000488228 OSCARQ8IYS5 282 aa18.57■□□□□ 0.56
UBE4B-210ENST00000488228 NUP160Q12769 1436 aa18.55■□□□□ 0.56
UBE4B-210ENST00000488228 CARMIL1Q5VZK9 1371 aa18.55■□□□□ 0.56
UBE4B-210ENST00000488228 EEA1Q15075 1411 aa18.53■□□□□ 0.56
UBE4B-210ENST00000488228 DNAJC5Q9H3Z4 198 aa18.53■□□□□ 0.56
UBE4B-210ENST00000488228 CTTNBP2Q8WZ74 1663 aa18.5■□□□□ 0.55
UBE4B-210ENST00000488228 RAPGEF2Q9Y4G8 1499 aa18.5■□□□□ 0.55
UBE4B-210ENST00000488228 PRXQ9BXM0 1461 aa18.49■□□□□ 0.55
UBE4B-210ENST00000488228 FAM9AQ8IZU1 332 aaPredicted RBP18.48■□□□□ 0.55
UBE4B-210ENST00000488228 RIMBP3CA6NJZ7 1639 aa18.48■□□□□ 0.55
UBE4B-210ENST00000488228 RIMBP3BA6NNM3 1639 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms