RNA–Protein interactions for RNA: ENST00000488128.6

COL16A1-214, Transcript of collagen type XVI alpha 1 chain, humanhuman

TSL 5

Gene COL16A1, Length 2,854 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL16A1-214ENST00000488128 NISCHQ9Y2I1 1504 aa28.26■■■□□ 2.11
COL16A1-214ENST00000488128 SHROOM4Q9ULL8 1493 aa24.38■■□□□ 1.49
COL16A1-214ENST00000488128 SUPT5HO00267 1087 aaKnown RBP24.22■■□□□ 1.47
COL16A1-214ENST00000488128 CCDC180Q9P1Z9 1646 aa23.9■■□□□ 1.42
COL16A1-214ENST00000488128 HRCP23327 699 aa23.87■■□□□ 1.41
COL16A1-214ENST00000488128 ZCCHC6Q5VYS8 1495 aaKnown RBP23.85■■□□□ 1.41
COL16A1-214ENST00000488128 DCAF8L2P0C7V8 631 aa23.83■■□□□ 1.41
COL16A1-214ENST00000488128 PCGF6Q9BYE7 350 aa23.75■■□□□ 1.39
COL16A1-214ENST00000488128 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
COL16A1-214ENST00000488128 MYO15BQ96JP2 1530 aa23.6■■□□□ 1.37
COL16A1-214ENST00000488128 CHIC1Q5VXU3 224 aa23.5■■□□□ 1.35
COL16A1-214ENST00000488128 LOC105371045A0A1W2PR82 267 aa23.18■■□□□ 1.3
COL16A1-214ENST00000488128 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
COL16A1-214ENST00000488128 TRIM26Q12899 539 aaPredicted RBP22.77■■□□□ 1.24
COL16A1-214ENST00000488128 SCRIBQ14160 1630 aa22.62■■□□□ 1.21
COL16A1-214ENST00000488128 EHMT2Q96KQ7 1210 aa22.61■■□□□ 1.21
COL16A1-214ENST00000488128 SCAF1Q9H7N4 1312 aaKnown RBP22.59■■□□□ 1.21
COL16A1-214ENST00000488128 ABCC9O60706 1549 aa22.55■■□□□ 1.2
COL16A1-214ENST00000488128 FAM9AQ8IZU1 332 aaPredicted RBP22.49■■□□□ 1.19
COL16A1-214ENST00000488128 PELP1Q8IZL8 1130 aaKnown RBP22.45■■□□□ 1.18
COL16A1-214ENST00000488128 RSF1Q96T23 1441 aaPredicted RBP22.39■■□□□ 1.18
COL16A1-214ENST00000488128 ZEB1P37275 1124 aaPredicted RBP22.36■■□□□ 1.17
COL16A1-214ENST00000488128 TRIM41Q8WV44 630 aa22.25■■□□□ 1.15
COL16A1-214ENST00000488128 NACADO15069 1562 aa22.2■■□□□ 1.15
COL16A1-214ENST00000488128 CECR2Q9BXF3 1484 aa22.17■■□□□ 1.14
COL16A1-214ENST00000488128 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
COL16A1-214ENST00000488128 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.1■■□□□ 1.13
COL16A1-214ENST00000488128 NEUROD1Q13562 356 aa22.09■■□□□ 1.13
COL16A1-214ENST00000488128 MROH2BQ7Z745 1585 aa22.03■■□□□ 1.12
COL16A1-214ENST00000488128 ACIN1Q9UKV3 1341 aaKnown RBP22■■□□□ 1.11
COL16A1-214ENST00000488128 TTBK1Q5TCY1 1321 aaPredicted RBP21.98■■□□□ 1.11
COL16A1-214ENST00000488128 CCER1Q8TC90 406 aaPredicted RBP21.97■■□□□ 1.11
COL16A1-214ENST00000488128 GTF3C3Q9Y5Q9 886 aa21.96■■□□□ 1.11
COL16A1-214ENST00000488128 WIZO95785 1651 aa21.87■■□□□ 1.09
COL16A1-214ENST00000488128 DIEXFQ68CQ4 756 aaKnown RBP21.82■■□□□ 1.08
COL16A1-214ENST00000488128 CENPBP07199 599 aaPredicted RBP21.72■■□□□ 1.07
COL16A1-214ENST00000488128 YTHDC1Q96MU7 727 aaKnown RBP21.71■■□□□ 1.07
COL16A1-214ENST00000488128 BAZ1AQ9NRL2 1556 aaPredicted RBP21.68■■□□□ 1.06
COL16A1-214ENST00000488128 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.062e-6■■■■□ 24.6
COL16A1-214ENST00000488128 SMARCA4P51532 1647 aa21.51■■□□□ 1.03
COL16A1-214ENST00000488128 UNC13AQ9UPW8 1703 aa21.51■■□□□ 1.03
COL16A1-214ENST00000488128 CCDC88BA6NC98 1476 aa21.48■■□□□ 1.03
COL16A1-214ENST00000488128 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
COL16A1-214ENST00000488128 ABCC8Q09428 1581 aa21.42■■□□□ 1.02
COL16A1-214ENST00000488128 EIF4G1Q04637 1599 aaKnown RBP21.41■■□□□ 1.02
COL16A1-214ENST00000488128 MYT1Q01538 1121 aa21.38■■□□□ 1.01
COL16A1-214ENST00000488128 SMARCA2P51531 1590 aa21.37■■□□□ 1.01
COL16A1-214ENST00000488128 ZNF316A6NFI3 1004 aaPredicted RBP21.37■■□□□ 1.01
COL16A1-214ENST00000488128 MIER1Q8N108 512 aa21.34■■□□□ 1.01
COL16A1-214ENST00000488128 BICRAQ9NZM4 1560 aa21.33■■□□□ 1.01
COL16A1-214ENST00000488128 HNRNPUL2Q1KMD3 747 aaKnown RBP21.25■□□□□ 0.99
COL16A1-214ENST00000488128 SOGA1O94964 1423 aa21.24■□□□□ 0.99
COL16A1-214ENST00000488128 UBTFP17480 764 aaKnown RBP21.21■□□□□ 0.99
COL16A1-214ENST00000488128 CEP162Q5TB80 1403 aa21.16■□□□□ 0.98
COL16A1-214ENST00000488128 RUSC2Q8N2Y8 1516 aa21.14■□□□□ 0.97
COL16A1-214ENST00000488128 CSRNP3Q8WYN3 585 aa21.11■□□□□ 0.97
COL16A1-214ENST00000488128 RANGAP1P46060 587 aaPredicted RBP21.05■□□□□ 0.96
COL16A1-214ENST00000488128 ATAD2BQ9ULI0 1458 aa21.05■□□□□ 0.96
COL16A1-214ENST00000488128 WRNQ14191 1432 aaPredicted RBP eCLIP21.04■□□□□ 0.96
COL16A1-214ENST00000488128 PEG3Q9GZU2 1588 aa21.02■□□□□ 0.95
COL16A1-214ENST00000488128 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
COL16A1-214ENST00000488128 TNIKQ9UKE5 1360 aa20.96■□□□□ 0.95
COL16A1-214ENST00000488128 EEA1Q15075 1411 aa20.93■□□□□ 0.94
COL16A1-214ENST00000488128 SYNJ1O43426 1573 aa20.9■□□□□ 0.94
COL16A1-214ENST00000488128 SUPT16HQ9Y5B9 1047 aaKnown RBP20.85■□□□□ 0.93
COL16A1-214ENST00000488128 GOLGA3Q08378 1498 aa20.85■□□□□ 0.93
COL16A1-214ENST00000488128 APLP2Q06481 763 aa20.76■□□□□ 0.91
COL16A1-214ENST00000488128 CEP164Q9UPV0 1460 aa20.74■□□□□ 0.91
COL16A1-214ENST00000488128 BCANQ96GW7 911 aa20.72■□□□□ 0.91
COL16A1-214ENST00000488128 TSHZ2Q9NRE2 1034 aa20.71■□□□□ 0.91
COL16A1-214ENST00000488128 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
COL16A1-214ENST00000488128 CLIP1P30622 1438 aa20.68■□□□□ 0.9
COL16A1-214ENST00000488128 KCNH8Q96L42 1107 aa20.68■□□□□ 0.9
COL16A1-214ENST00000488128 KIF21BO75037 1637 aa20.62■□□□□ 0.89
COL16A1-214ENST00000488128 NCAPD3P42695 1498 aa20.62■□□□□ 0.89
COL16A1-214ENST00000488128 TOP2BQ02880 1626 aa20.59■□□□□ 0.89
COL16A1-214ENST00000488128 ANP32EQ9BTT0 268 aa20.57■□□□□ 0.88
COL16A1-214ENST00000488128 ITGAEP38570 1179 aa20.56■□□□□ 0.88
COL16A1-214ENST00000488128 HMGXB3Q12766 1538 aa20.53■□□□□ 0.88
COL16A1-214ENST00000488128 VPS8Q8N3P4 1428 aa20.52■□□□□ 0.88
COL16A1-214ENST00000488128 DHX57Q6P158 1386 aaKnown RBP20.51■□□□□ 0.87
COL16A1-214ENST00000488128 CUX1P39880 1505 aa20.49■□□□□ 0.87
COL16A1-214ENST00000488128 KANK4Q5T7N3 995 aaPredicted RBP20.46■□□□□ 0.87
COL16A1-214ENST00000488128 BCL11AQ9H165 835 aa20.46■□□□□ 0.87
COL16A1-214ENST00000488128 FKBP8Q14318 412 aa20.46■□□□□ 0.87
COL16A1-214ENST00000488128 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
COL16A1-214ENST00000488128 CFTRP13569 1480 aa20.44■□□□□ 0.86
COL16A1-214ENST00000488128 CLSPNQ9HAW4 1339 aa20.42■□□□□ 0.86
COL16A1-214ENST00000488128 PRXQ9BXM0 1461 aa20.41■□□□□ 0.86
COL16A1-214ENST00000488128 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
COL16A1-214ENST00000488128 DDX10Q13206 875 aaKnown RBP20.36■□□□□ 0.85
COL16A1-214ENST00000488128 HIRIP3Q9BW71 556 aaPredicted RBP20.36■□□□□ 0.85
COL16A1-214ENST00000488128 TRIM52Q96A61 297 aa20.32■□□□□ 0.84
COL16A1-214ENST00000488128 ERICH3Q5RHP9 1530 aa20.31■□□□□ 0.84
COL16A1-214ENST00000488128 ARAP1Q96P48 1450 aa20.31■□□□□ 0.84
COL16A1-214ENST00000488128 CADPSQ9ULU8 1353 aa20.29■□□□□ 0.84
COL16A1-214ENST00000488128 RBM19Q9Y4C8 960 aaKnown RBP20.26■□□□□ 0.83
COL16A1-214ENST00000488128 CUX2O14529 1486 aa20.26■□□□□ 0.83
COL16A1-214ENST00000488128 SIN3AQ96ST3 1273 aa20.22■□□□□ 0.83
COL16A1-214ENST00000488128 IGF1RP08069 1367 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 511.8 ms