RNA–Protein interactions for RNA: ENST00000487997.1

PTBP3-208, Transcript of polypyrimidine tract binding protein 3, humanhuman

TSL 3

Gene PTBP3, Length 389 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP3-208ENST00000487997 AEBP2Q6ZN18 517 aaPredicted RBP27.47■■□□□ 1.99
PTBP3-208ENST00000487997 CHIC1Q5VXU3 224 aa26.23■■□□□ 1.79
PTBP3-208ENST00000487997 SENP3Q9H4L4 574 aaPredicted RBP23.3■■□□□ 1.32
PTBP3-208ENST00000487997 PHF23Q9BUL5 403 aaPredicted RBP23.06■■□□□ 1.28
PTBP3-208ENST00000487997 NISCHQ9Y2I1 1504 aa22.92■■□□□ 1.26
PTBP3-208ENST00000487997 FOXD1Q16676 465 aa21.74■■□□□ 1.07
PTBP3-208ENST00000487997 PLPPR3Q6T4P5 718 aa21.02■□□□□ 0.96
PTBP3-208ENST00000487997 PPP6R1Q9UPN7 881 aa20.54■□□□□ 0.88
PTBP3-208ENST00000487997 ADRA2BP18089 450 aa20.47■□□□□ 0.87
PTBP3-208ENST00000487997 CCDC180Q9P1Z9 1646 aa20.44■□□□□ 0.86
PTBP3-208ENST00000487997 PIAS4Q8N2W9 510 aaPredicted RBP20.34■□□□□ 0.85
PTBP3-208ENST00000487997 MSH5O43196 834 aa20.19■□□□□ 0.82
PTBP3-208ENST00000487997 ABCC9O60706 1549 aa19.91■□□□□ 0.78
PTBP3-208ENST00000487997 POTEDQ86YR6 584 aa19.41■□□□□ 0.7
PTBP3-208ENST00000487997 RB1CC1Q8TDY2 1594 aa19.22■□□□□ 0.67
PTBP3-208ENST00000487997 DCAF8L2P0C7V8 631 aa19.21■□□□□ 0.67
PTBP3-208ENST00000487997 NACADO15069 1562 aa19.18■□□□□ 0.66
PTBP3-208ENST00000487997 ZCCHC6Q5VYS8 1495 aaKnown RBP19.08■□□□□ 0.64
PTBP3-208ENST00000487997 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
PTBP3-208ENST00000487997 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
PTBP3-208ENST00000487997 UNC13AQ9UPW8 1703 aa18.84■□□□□ 0.61
PTBP3-208ENST00000487997 MAPK8IP2Q13387 824 aaPredicted RBP18.75■□□□□ 0.59
PTBP3-208ENST00000487997 SCRIBQ14160 1630 aa18.63■□□□□ 0.57
PTBP3-208ENST00000487997 SCAF1Q9H7N4 1312 aaKnown RBP18.6■□□□□ 0.57
PTBP3-208ENST00000487997 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
PTBP3-208ENST00000487997 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
PTBP3-208ENST00000487997 DMRT2Q9Y5R5 561 aa18.53■□□□□ 0.56
PTBP3-208ENST00000487997 PPP4R3CPQ6ZMV5 832 aa18.48■□□□□ 0.55
PTBP3-208ENST00000487997 SHROOM4Q9ULL8 1493 aa18.39■□□□□ 0.53
PTBP3-208ENST00000487997 DNAJC5BQ9UF47 199 aa18.16■□□□□ 0.5
PTBP3-208ENST00000487997 EIF4G1Q04637 1599 aaKnown RBP18.1■□□□□ 0.49
PTBP3-208ENST00000487997 CNKSR2Q8WXI2 1034 aa18.06■□□□□ 0.48
PTBP3-208ENST00000487997 CC2D2AQ9P2K1 1620 aa18.04■□□□□ 0.48
PTBP3-208ENST00000487997 HOXD11P31277 338 aaPredicted RBP17.94■□□□□ 0.46
PTBP3-208ENST00000487997 CECR2Q9BXF3 1484 aa17.88■□□□□ 0.45
PTBP3-208ENST00000487997 RNF216Q9NWF9 866 aaPredicted RBP17.84■□□□□ 0.45
PTBP3-208ENST00000487997 SMARCA4P51532 1647 aa17.81■□□□□ 0.44
PTBP3-208ENST00000487997 BAZ1AQ9NRL2 1556 aaPredicted RBP17.8■□□□□ 0.44
PTBP3-208ENST00000487997 NCBP3Q53F19 620 aaKnown RBP17.77■□□□□ 0.44
PTBP3-208ENST00000487997 DCAF8L1A6NGE4 600 aa17.74■□□□□ 0.43
PTBP3-208ENST00000487997 SMARCA2P51531 1590 aa17.7■□□□□ 0.42
PTBP3-208ENST00000487997 ATAD2BQ9ULI0 1458 aa17.66■□□□□ 0.42
PTBP3-208ENST00000487997 MROH2BQ7Z745 1585 aa17.65■□□□□ 0.42
PTBP3-208ENST00000487997 NCAPD3P42695 1498 aa17.63■□□□□ 0.41
PTBP3-208ENST00000487997 NPM3O75607 178 aaKnown RBP17.6■□□□□ 0.41
PTBP3-208ENST00000487997 PEG3Q9GZU2 1588 aa17.6■□□□□ 0.41
PTBP3-208ENST00000487997 HMGXB3Q12766 1538 aa17.59■□□□□ 0.41
PTBP3-208ENST00000487997 BAZ1BQ9UIG0 1483 aaKnown RBP17.56■□□□□ 0.4
PTBP3-208ENST00000487997 WIZO95785 1651 aa17.52■□□□□ 0.4
PTBP3-208ENST00000487997 KCNA4P22459 653 aa17.47■□□□□ 0.39
PTBP3-208ENST00000487997 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
PTBP3-208ENST00000487997 RNF39Q9H2S5 420 aa17.31■□□□□ 0.36
PTBP3-208ENST00000487997 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
PTBP3-208ENST00000487997 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
PTBP3-208ENST00000487997 CACNB1Q02641 598 aaPredicted RBP17.22■□□□□ 0.35
PTBP3-208ENST00000487997 NESP48681 1621 aa17.21■□□□□ 0.35
PTBP3-208ENST00000487997 ERCC6Q03468 1493 aa17.21■□□□□ 0.35
PTBP3-208ENST00000487997 CADPSQ9ULU8 1353 aa17.14■□□□□ 0.33
PTBP3-208ENST00000487997 KIF21AQ7Z4S6 1674 aa17.11■□□□□ 0.33
PTBP3-208ENST00000487997 SUPT5HO00267 1087 aaKnown RBP17.1■□□□□ 0.33
PTBP3-208ENST00000487997 PDS5BQ9NTI5 1447 aa17.1■□□□□ 0.33
PTBP3-208ENST00000487997 PRDM2Q13029 1718 aa17.08■□□□□ 0.32
PTBP3-208ENST00000487997 CCDC88BA6NC98 1476 aa17.08■□□□□ 0.32
PTBP3-208ENST00000487997 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.06■□□□□ 0.32
PTBP3-208ENST00000487997 CFTRP13569 1480 aa17.03■□□□□ 0.32
PTBP3-208ENST00000487997 C1QBPQ07021 282 aaKnown RBP17.02■□□□□ 0.32
PTBP3-208ENST00000487997 CUX2O14529 1486 aa16.98■□□□□ 0.31
PTBP3-208ENST00000487997 THOC2Q8NI27 1593 aaKnown RBP16.98■□□□□ 0.31
PTBP3-208ENST00000487997 FANCD2Q9BXW9 1451 aa16.97■□□□□ 0.31
PTBP3-208ENST00000487997 CEP164Q9UPV0 1460 aa16.96■□□□□ 0.31
PTBP3-208ENST00000487997 MRC2Q9UBG0 1479 aa16.91■□□□□ 0.3
PTBP3-208ENST00000487997 WDR62O43379 1518 aa16.85■□□□□ 0.29
PTBP3-208ENST00000487997 SLC4A2P04920 1241 aa16.77■□□□□ 0.28
PTBP3-208ENST00000487997 U3KPZ7 1027 aaPredicted RBP16.77■□□□□ 0.28
PTBP3-208ENST00000487997 URB2Q14146 1524 aaKnown RBP16.76■□□□□ 0.27
PTBP3-208ENST00000487997 ABCC8Q09428 1581 aa16.74■□□□□ 0.27
PTBP3-208ENST00000487997 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
PTBP3-208ENST00000487997 TOPBP1Q92547 1522 aa16.7■□□□□ 0.26
PTBP3-208ENST00000487997 IFT140Q96RY7 1462 aa16.59■□□□□ 0.25
PTBP3-208ENST00000487997 CUX1P39880 1505 aa16.56■□□□□ 0.24
PTBP3-208ENST00000487997 POLA1P09884 1462 aaPredicted RBP16.54■□□□□ 0.24
PTBP3-208ENST00000487997 FGD5Q6ZNL6 1462 aa16.52■□□□□ 0.23
PTBP3-208ENST00000487997 TARBP1Q13395 1621 aaKnown RBP16.52■□□□□ 0.23
PTBP3-208ENST00000487997 SLC4A1APQ9BWU0 796 aaKnown RBP16.5■□□□□ 0.23
PTBP3-208ENST00000487997 SOGA1O94964 1423 aa16.5■□□□□ 0.23
PTBP3-208ENST00000487997 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
PTBP3-208ENST00000487997 BIVM-ERCC5R4GMW8 1640 aa16.48■□□□□ 0.23
PTBP3-208ENST00000487997 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
PTBP3-208ENST00000487997 EIF4G3O43432 1585 aaKnown RBP16.47■□□□□ 0.23
PTBP3-208ENST00000487997 ZNF608Q9ULD9 1512 aaPredicted RBP16.47■□□□□ 0.23
PTBP3-208ENST00000487997 TOP2BQ02880 1626 aa16.47■□□□□ 0.23
PTBP3-208ENST00000487997 RAD54L2Q9Y4B4 1467 aa16.47■□□□□ 0.23
PTBP3-208ENST00000487997 SYNJ1O43426 1573 aa16.44■□□□□ 0.22
PTBP3-208ENST00000487997 WDR97A6NE52 1622 aa16.42■□□□□ 0.22
PTBP3-208ENST00000487997 AQRO60306 1485 aaKnown RBP eCLIP16.4■□□□□ 0.227e-6■■□□□ 12.2
PTBP3-208ENST00000487997 DNAJC5Q9H3Z4 198 aa16.39■□□□□ 0.21
PTBP3-208ENST00000487997 CAPN15O75808 1086 aa16.38■□□□□ 0.21
PTBP3-208ENST00000487997 TDRD9Q8NDG6 1382 aaKnown RBP16.38■□□□□ 0.21
PTBP3-208ENST00000487997 PBRM1Q86U86 1689 aa16.36■□□□□ 0.21
PTBP3-208ENST00000487997 ABCA10Q8WWZ4 1543 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms