RNA–Protein interactions for RNA: ENST00000487894.5

HMG20B-212, Transcript of high mobility group 20B, humanhuman

TSL 2

Gene HMG20B, Length 1,242 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20B-212ENST00000487894 NISCHQ9Y2I1 1504 aa41.85■■■■■ 4.29
HMG20B-212ENST00000487894 CCDC180Q9P1Z9 1646 aa37.38■■■■□ 3.57
HMG20B-212ENST00000487894 ABCC9O60706 1549 aa36.5■■■■□ 3.43
HMG20B-212ENST00000487894 RB1CC1Q8TDY2 1594 aa35.13■■■■□ 3.21
HMG20B-212ENST00000487894 NACADO15069 1562 aa35.05■■■■□ 3.2
HMG20B-212ENST00000487894 ZCCHC6Q5VYS8 1495 aaKnown RBP34.88■■■■□ 3.17
HMG20B-212ENST00000487894 MYO15BQ96JP2 1530 aa34.81■■■■□ 3.16
HMG20B-212ENST00000487894 DCAF8L2P0C7V8 631 aa34.79■■■■□ 3.16
HMG20B-212ENST00000487894 DCAF1Q9Y4B6 1507 aa34.65■■■■□ 3.14
HMG20B-212ENST00000487894 UNC13AQ9UPW8 1703 aa34.52■■■■□ 3.12
HMG20B-212ENST00000487894 BICRAQ9NZM4 1560 aa34.13■■■■□ 3.05
HMG20B-212ENST00000487894 SCRIBQ14160 1630 aa34.04■■■■□ 3.04
HMG20B-212ENST00000487894 PABPN1Q86U42 306 aaKnown RBP eCLIP34■■■■□ 3.033e-8■■■□□ 16.7
HMG20B-212ENST00000487894 SHROOM4Q9ULL8 1493 aa33.71■■■□□ 2.99
HMG20B-212ENST00000487894 DNAJC5BQ9UF47 199 aa33.52■■■□□ 2.96
HMG20B-212ENST00000487894 EIF4G1Q04637 1599 aaKnown RBP33.2■■■□□ 2.91
HMG20B-212ENST00000487894 CC2D2AQ9P2K1 1620 aa33.1■■■□□ 2.89
HMG20B-212ENST00000487894 CECR2Q9BXF3 1484 aa32.8■■■□□ 2.84
HMG20B-212ENST00000487894 SMARCA4P51532 1647 aa32.56■■■□□ 2.8
HMG20B-212ENST00000487894 BAZ1AQ9NRL2 1556 aaPredicted RBP32.45■■■□□ 2.79
HMG20B-212ENST00000487894 ATAD2BQ9ULI0 1458 aa32.31■■■□□ 2.76
HMG20B-212ENST00000487894 SMARCA2P51531 1590 aa32.31■■■□□ 2.76
HMG20B-212ENST00000487894 NCAPD3P42695 1498 aa32.29■■■□□ 2.76
HMG20B-212ENST00000487894 MROH2BQ7Z745 1585 aa32.26■■■□□ 2.75
HMG20B-212ENST00000487894 PEG3Q9GZU2 1588 aa32.24■■■□□ 2.75
HMG20B-212ENST00000487894 HMGXB3Q12766 1538 aa32.21■■■□□ 2.75
HMG20B-212ENST00000487894 BAZ1BQ9UIG0 1483 aaKnown RBP32.05■■■□□ 2.72
HMG20B-212ENST00000487894 WIZO95785 1651 aa31.97■■■□□ 2.71
HMG20B-212ENST00000487894 RSF1Q96T23 1441 aaPredicted RBP31.8■■■□□ 2.68
HMG20B-212ENST00000487894 NESP48681 1621 aa31.6■■■□□ 2.65
HMG20B-212ENST00000487894 TOP2AP11388 1531 aaKnown RBP31.59■■■□□ 2.65
HMG20B-212ENST00000487894 LAMC3Q9Y6N6 1575 aa31.54■■■□□ 2.64
HMG20B-212ENST00000487894 ERCC6Q03468 1493 aa31.45■■■□□ 2.62
HMG20B-212ENST00000487894 KIF21AQ7Z4S6 1674 aa31.35■■■□□ 2.61
HMG20B-212ENST00000487894 CADPSQ9ULU8 1353 aa31.31■■■□□ 2.6
HMG20B-212ENST00000487894 THOC2Q8NI27 1593 aaKnown RBP31.24■■■□□ 2.59
HMG20B-212ENST00000487894 PDS5BQ9NTI5 1447 aa31.22■■■□□ 2.59
HMG20B-212ENST00000487894 CUX2O14529 1486 aa31.19■■■□□ 2.58
HMG20B-212ENST00000487894 CFTRP13569 1480 aa31.16■■■□□ 2.58
HMG20B-212ENST00000487894 PRDM2Q13029 1718 aa31.15■■■□□ 2.58
HMG20B-212ENST00000487894 CCDC88BA6NC98 1476 aa31.15■■■□□ 2.58
HMG20B-212ENST00000487894 FANCD2Q9BXW9 1451 aa31.01■■■□□ 2.55
HMG20B-212ENST00000487894 CEP164Q9UPV0 1460 aa30.99■■■□□ 2.55
HMG20B-212ENST00000487894 MRC2Q9UBG0 1479 aa30.97■■■□□ 2.55
HMG20B-212ENST00000487894 WDR62O43379 1518 aa30.92■■■□□ 2.54
HMG20B-212ENST00000487894 DNAJC5Q9H3Z4 198 aa30.84■■■□□ 2.53
HMG20B-212ENST00000487894 SUPT5HO00267 1087 aaKnown RBP30.81■■■□□ 2.52
HMG20B-212ENST00000487894 URB2Q14146 1524 aaKnown RBP30.74■■■□□ 2.51
HMG20B-212ENST00000487894 TOPBP1Q92547 1522 aa30.52■■■□□ 2.48
HMG20B-212ENST00000487894 DNMBPQ6XZF7 1577 aa30.52■■■□□ 2.48
HMG20B-212ENST00000487894 ABCC8Q09428 1581 aa30.47■■■□□ 2.47
HMG20B-212ENST00000487894 IFT140Q96RY7 1462 aa30.32■■■□□ 2.44
HMG20B-212ENST00000487894 CUX1P39880 1505 aa30.28■■■□□ 2.44
HMG20B-212ENST00000487894 TARBP1Q13395 1621 aaKnown RBP30.27■■■□□ 2.44
HMG20B-212ENST00000487894 POLA1P09884 1462 aaPredicted RBP30.25■■■□□ 2.43
HMG20B-212ENST00000487894 ZNF608Q9ULD9 1512 aaPredicted RBP30.22■■■□□ 2.43
HMG20B-212ENST00000487894 EIF4G3O43432 1585 aaKnown RBP30.19■■■□□ 2.42
HMG20B-212ENST00000487894 FGD5Q6ZNL6 1462 aa30.18■■■□□ 2.42
HMG20B-212ENST00000487894 RAD54L2Q9Y4B4 1467 aa30.1■■■□□ 2.41
HMG20B-212ENST00000487894 WDR97A6NE52 1622 aa30.08■■■□□ 2.41
HMG20B-212ENST00000487894 BIVM-ERCC5R4GMW8 1640 aa30.07■■■□□ 2.4
HMG20B-212ENST00000487894 SOGA1O94964 1423 aa30.05■■■□□ 2.4
HMG20B-212ENST00000487894 TOP2BQ02880 1626 aa30.03■■■□□ 2.4
HMG20B-212ENST00000487894 SYNJ1O43426 1573 aa30.03■■■□□ 2.4
HMG20B-212ENST00000487894 AQRO60306 1485 aaKnown RBP eCLIP29.99■■■□□ 2.392e-7■■■■□ 26.5
HMG20B-212ENST00000487894 WRNQ14191 1432 aaPredicted RBP eCLIP29.98■■■□□ 2.39
HMG20B-212ENST00000487894 TDRD9Q8NDG6 1382 aaKnown RBP29.89■■■□□ 2.37
HMG20B-212ENST00000487894 CHD1O14646 1710 aa29.88■■■□□ 2.37
HMG20B-212ENST00000487894 ABCA10Q8WWZ4 1543 aa29.87■■■□□ 2.37
HMG20B-212ENST00000487894 PBRM1Q86U86 1689 aa29.87■■■□□ 2.37
HMG20B-212ENST00000487894 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
HMG20B-212ENST00000487894 SNAPC4Q5SXM2 1469 aa29.76■■■□□ 2.35
HMG20B-212ENST00000487894 GRIN2BQ13224 1484 aa29.75■■■□□ 2.35
HMG20B-212ENST00000487894 GAPVD1Q14C86 1478 aa29.75■■■□□ 2.35
HMG20B-212ENST00000487894 OSCARQ8IYS5 282 aa29.74■■■□□ 2.35
HMG20B-212ENST00000487894 MAGI1Q96QZ7 1491 aaPredicted RBP29.71■■■□□ 2.35
HMG20B-212ENST00000487894 SYNJ2O15056 1496 aa29.59■■■□□ 2.33
HMG20B-212ENST00000487894 ADAMTS12P58397 1594 aa29.56■■■□□ 2.32
HMG20B-212ENST00000487894 FBLN2P98095 1184 aa29.54■■■□□ 2.32
HMG20B-212ENST00000487894 ERICH3Q5RHP9 1530 aa29.53■■■□□ 2.32
HMG20B-212ENST00000487894 RIMBP3CA6NJZ7 1639 aa29.49■■■□□ 2.31
HMG20B-212ENST00000487894 RIMBP3BA6NNM3 1639 aa29.49■■■□□ 2.31
HMG20B-212ENST00000487894 RIMBP3Q9UFD9 1639 aa29.49■■■□□ 2.31
HMG20B-212ENST00000487894 CLASP1Q7Z460 1538 aa29.48■■■□□ 2.31
HMG20B-212ENST00000487894 CHMP7Q8WUX9 453 aaPredicted RBP29.46■■■□□ 2.31
HMG20B-212ENST00000487894 ARHGEF11O15085 1522 aa29.42■■■□□ 2.3
HMG20B-212ENST00000487894 GRIN2AQ12879 1464 aa29.41■■■□□ 2.3
HMG20B-212ENST00000487894 FHAD1B1AJZ9 1412 aa29.38■■■□□ 2.29
HMG20B-212ENST00000487894 KIF27Q86VH2 1401 aa29.34■■■□□ 2.29
HMG20B-212ENST00000487894 CEP170Q5SW79 1584 aa29.32■■■□□ 2.28
HMG20B-212ENST00000487894 CUL7Q14999 1698 aa29.31■■■□□ 2.28
HMG20B-212ENST00000487894 TRIM41Q8WV44 630 aa29.28■■■□□ 2.28
HMG20B-212ENST00000487894 NUP160Q12769 1436 aa29.27■■■□□ 2.28
HMG20B-212ENST00000487894 CHIC1Q5VXU3 224 aa29.26■■■□□ 2.27
HMG20B-212ENST00000487894 IGF1RP08069 1367 aa29.21■■■□□ 2.27
HMG20B-212ENST00000487894 ARAP1Q96P48 1450 aa29.18■■■□□ 2.26
HMG20B-212ENST00000487894 SHROOM2Q13796 1616 aa29.16■■■□□ 2.26
HMG20B-212ENST00000487894 RUSC2Q8N2Y8 1516 aa29.15■■■□□ 2.26
HMG20B-212ENST00000487894 ERCC6L2Q5T890 1561 aa29.06■■■□□ 2.24
HMG20B-212ENST00000487894 CARMIL1Q5VZK9 1371 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms