RNA–Protein interactions for RNA: ENST00000487431.1

RPL35-203, Transcript of ribosomal protein L35, humanhuman

TSL 1 (best)

Gene RPL35, Length 785 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL35-203ENST00000487431 NISCHQ9Y2I1 1504 aa53.87■■■■■ 6.21
RPL35-203ENST00000487431 CCDC180Q9P1Z9 1646 aa48.42■■■■■ 5.34
RPL35-203ENST00000487431 ABCC9O60706 1549 aa48.1■■■■■ 5.29
RPL35-203ENST00000487431 RB1CC1Q8TDY2 1594 aa45.95■■■■■ 4.95
RPL35-203ENST00000487431 NACADO15069 1562 aa45.68■■■■■ 4.9
RPL35-203ENST00000487431 MYO15BQ96JP2 1530 aa45.16■■■■■ 4.82
RPL35-203ENST00000487431 DCAF8L2P0C7V8 631 aa45.14■■■■■ 4.82
RPL35-203ENST00000487431 UNC13AQ9UPW8 1703 aa45.04■■■■■ 4.8
RPL35-203ENST00000487431 DNAJC5BQ9UF47 199 aa45.02■■■■■ 4.8
RPL35-203ENST00000487431 PABPN1Q86U42 306 aaKnown RBP eCLIP44.71■■■■■ 4.75
RPL35-203ENST00000487431 ZCCHC6Q5VYS8 1495 aaKnown RBP44.69■■■■■ 4.74
RPL35-203ENST00000487431 BICRAQ9NZM4 1560 aa44.65■■■■■ 4.74
RPL35-203ENST00000487431 DCAF1Q9Y4B6 1507 aa44.59■■■■■ 4.73
RPL35-203ENST00000487431 SHROOM4Q9ULL8 1493 aa44.09■■■■■ 4.65
RPL35-203ENST00000487431 SCRIBQ14160 1630 aa43.97■■■■■ 4.63
RPL35-203ENST00000487431 CC2D2AQ9P2K1 1620 aa43.56■■■■■ 4.56
RPL35-203ENST00000487431 EIF4G1Q04637 1599 aaKnown RBP43.5■■■■■ 4.55
RPL35-203ENST00000487431 CECR2Q9BXF3 1484 aa43.35■■■■■ 4.53
RPL35-203ENST00000487431 NCAPD3P42695 1498 aa42.14■■■■■ 4.34
RPL35-203ENST00000487431 SMARCA4P51532 1647 aa42.03■■■■■ 4.32
RPL35-203ENST00000487431 ATAD2BQ9ULI0 1458 aa41.99■■■■■ 4.31
RPL35-203ENST00000487431 SMARCA2P51531 1590 aa41.92■■■■■ 4.3
RPL35-203ENST00000487431 HMGXB3Q12766 1538 aa41.88■■■■■ 4.29
RPL35-203ENST00000487431 BAZ1AQ9NRL2 1556 aaPredicted RBP41.82■■■■■ 4.29
RPL35-203ENST00000487431 PEG3Q9GZU2 1588 aa41.69■■■■■ 4.26
RPL35-203ENST00000487431 BAZ1BQ9UIG0 1483 aaKnown RBP41.57■■■■■ 4.25
RPL35-203ENST00000487431 CUX2O14529 1486 aa41.52■■■■■ 4.24
RPL35-203ENST00000487431 ERCC6Q03468 1493 aa41.51■■■■■ 4.24
RPL35-203ENST00000487431 MROH2BQ7Z745 1585 aa41.47■■■■■ 4.23
RPL35-203ENST00000487431 NESP48681 1621 aa41.37■■■■■ 4.21
RPL35-203ENST00000487431 DNAJC5Q9H3Z4 198 aa41.3■■■■■ 4.2
RPL35-203ENST00000487431 LAMC3Q9Y6N6 1575 aa41.21■■■■■ 4.19
RPL35-203ENST00000487431 THOC2Q8NI27 1593 aaKnown RBP41.06■■■■■ 4.16
RPL35-203ENST00000487431 WIZO95785 1651 aa41.01■■■■■ 4.16
RPL35-203ENST00000487431 KIF21AQ7Z4S6 1674 aa40.97■■■■■ 4.15
RPL35-203ENST00000487431 PDS5BQ9NTI5 1447 aa40.87■■■■■ 4.13
RPL35-203ENST00000487431 CADPSQ9ULU8 1353 aa40.8■■■■■ 4.12
RPL35-203ENST00000487431 RSF1Q96T23 1441 aaPredicted RBP40.64■■■■■ 4.1
RPL35-203ENST00000487431 MRC2Q9UBG0 1479 aa40.54■■■■■ 4.08
RPL35-203ENST00000487431 TOP2AP11388 1531 aaKnown RBP40.52■■■■■ 4.08
RPL35-203ENST00000487431 WDR62O43379 1518 aa40.5■■■■■ 4.07
RPL35-203ENST00000487431 CFTRP13569 1480 aa40.4■■■■■ 4.06
RPL35-203ENST00000487431 CEP164Q9UPV0 1460 aa40.39■■■■■ 4.06
RPL35-203ENST00000487431 FANCD2Q9BXW9 1451 aa40.34■■■■■ 4.05
RPL35-203ENST00000487431 PRDM2Q13029 1718 aa40.19■■■■■ 4.02
RPL35-203ENST00000487431 URB2Q14146 1524 aaKnown RBP40.03■■■■■ 4
RPL35-203ENST00000487431 CCDC88BA6NC98 1476 aa40■■■■□ 3.99
RPL35-203ENST00000487431 TOPBP1Q92547 1522 aa39.62■■■■□ 3.93
RPL35-203ENST00000487431 IFT140Q96RY7 1462 aa39.59■■■■□ 3.93
RPL35-203ENST00000487431 ABCC8Q09428 1581 aa39.58■■■■□ 3.93
RPL35-203ENST00000487431 DNMBPQ6XZF7 1577 aa39.51■■■■□ 3.92
RPL35-203ENST00000487431 OSCARQ8IYS5 282 aa39.51■■■■□ 3.92
RPL35-203ENST00000487431 ZNF608Q9ULD9 1512 aaPredicted RBP39.49■■■■□ 3.91
RPL35-203ENST00000487431 TRIM41Q8WV44 630 aa39.38■■■■□ 3.89
RPL35-203ENST00000487431 EIF4G3O43432 1585 aaKnown RBP39.35■■■■□ 3.89
RPL35-203ENST00000487431 TARBP1Q13395 1621 aaKnown RBP39.33■■■■□ 3.89
RPL35-203ENST00000487431 POLA1P09884 1462 aaPredicted RBP39.21■■■■□ 3.87
RPL35-203ENST00000487431 RIMBP3CA6NJZ7 1639 aa39.11■■■■□ 3.85
RPL35-203ENST00000487431 RIMBP3BA6NNM3 1639 aa39.11■■■■□ 3.85
RPL35-203ENST00000487431 RIMBP3Q9UFD9 1639 aa39.11■■■■□ 3.85
RPL35-203ENST00000487431 AQRO60306 1485 aaKnown RBP eCLIP39.11■■■■□ 3.851e-11■■■■■ 75.8
RPL35-203ENST00000487431 CHD1O14646 1710 aa39.08■■■■□ 3.85
RPL35-203ENST00000487431 RAD54L2Q9Y4B4 1467 aa39.01■■■■□ 3.84
RPL35-203ENST00000487431 WDR97A6NE52 1622 aa39■■■■□ 3.83
RPL35-203ENST00000487431 SOGA1O94964 1423 aa38.98■■■■□ 3.83
RPL35-203ENST00000487431 CUX1P39880 1505 aa38.98■■■■□ 3.83
RPL35-203ENST00000487431 ARHGEF11O15085 1522 aa38.97■■■■□ 3.83
RPL35-203ENST00000487431 FGD5Q6ZNL6 1462 aa38.97■■■■□ 3.83
RPL35-203ENST00000487431 TDRD9Q8NDG6 1382 aaKnown RBP38.85■■■■□ 3.81
RPL35-203ENST00000487431 SNAPC4Q5SXM2 1469 aa38.74■■■■□ 3.79
RPL35-203ENST00000487431 SUPT5HO00267 1087 aaKnown RBP38.71■■■■□ 3.79
RPL35-203ENST00000487431 FBLN2P98095 1184 aa38.7■■■■□ 3.79
RPL35-203ENST00000487431 MAGI1Q96QZ7 1491 aaPredicted RBP38.7■■■■□ 3.79
RPL35-203ENST00000487431 GRIN2BQ13224 1484 aa38.67■■■■□ 3.78
RPL35-203ENST00000487431 PBRM1Q86U86 1689 aa38.64■■■■□ 3.78
RPL35-203ENST00000487431 CLASP1Q7Z460 1538 aa38.62■■■■□ 3.77
RPL35-203ENST00000487431 ARAP1Q96P48 1450 aa38.59■■■■□ 3.77
RPL35-203ENST00000487431 ABCA10Q8WWZ4 1543 aa38.58■■■■□ 3.77
RPL35-203ENST00000487431 SYNJ1O43426 1573 aa38.57■■■■□ 3.76
RPL35-203ENST00000487431 ABCA5Q8WWZ7 1642 aa38.56■■■■□ 3.76
RPL35-203ENST00000487431 SYNJ2O15056 1496 aa38.55■■■■□ 3.76
RPL35-203ENST00000487431 GAPVD1Q14C86 1478 aa38.54■■■■□ 3.76
RPL35-203ENST00000487431 CYB5RLQ6IPT4 315 aa38.53■■■■□ 3.76
RPL35-203ENST00000487431 CHMP7Q8WUX9 453 aaPredicted RBP38.5■■■■□ 3.75
RPL35-203ENST00000487431 BIVM-ERCC5R4GMW8 1640 aa38.47■■■■□ 3.75
RPL35-203ENST00000487431 TOP2BQ02880 1626 aa38.41■■■■□ 3.74
RPL35-203ENST00000487431 WRNQ14191 1432 aaPredicted RBP eCLIP38.38■■■■□ 3.73
RPL35-203ENST00000487431 ADAMTS12P58397 1594 aa38.23■■■■□ 3.71
RPL35-203ENST00000487431 GRIN2AQ12879 1464 aa38.2■■■■□ 3.71
RPL35-203ENST00000487431 ERICH3Q5RHP9 1530 aa38.11■■■■□ 3.69
RPL35-203ENST00000487431 NUP160Q12769 1436 aa38.08■■■■□ 3.69
RPL35-203ENST00000487431 CEP170Q5SW79 1584 aa38.08■■■■□ 3.69
RPL35-203ENST00000487431 FHAD1B1AJZ9 1412 aa38.07■■■■□ 3.69
RPL35-203ENST00000487431 TRHP20396 242 aaPredicted RBP38.03■■■■□ 3.68
RPL35-203ENST00000487431 SHROOM2Q13796 1616 aa37.98■■■■□ 3.67
RPL35-203ENST00000487431 ERCC6L2Q5T890 1561 aa37.96■■■■□ 3.67
RPL35-203ENST00000487431 RUSC2Q8N2Y8 1516 aa37.7■■■■□ 3.63
RPL35-203ENST00000487431 PRG4Q92954 1404 aaPredicted RBP37.62■■■■□ 3.61
RPL35-203ENST00000487431 CUL7Q14999 1698 aa37.61■■■■□ 3.61
RPL35-203ENST00000487431 JPH4Q96JJ6 628 aa37.59■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms