RNA–Protein interactions for RNA: ENST00000487129.1

PFDN4-204, Transcript of prefoldin subunit 4, humanhuman

TSL 2

Gene PFDN4, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN4-204ENST00000487129 NISCHQ9Y2I1 1504 aa38.43■■■■□ 3.74
PFDN4-204ENST00000487129 ABCC9O60706 1549 aa35.12■■■■□ 3.21
PFDN4-204ENST00000487129 CCDC180Q9P1Z9 1646 aa34.66■■■■□ 3.14
PFDN4-204ENST00000487129 DNAJC5BQ9UF47 199 aa33.46■■■□□ 2.95
PFDN4-204ENST00000487129 RB1CC1Q8TDY2 1594 aa33.19■■■□□ 2.9
PFDN4-204ENST00000487129 NACADO15069 1562 aa32.87■■■□□ 2.85
PFDN4-204ENST00000487129 PABPN1Q86U42 306 aaKnown RBP eCLIP32.61■■■□□ 2.81
PFDN4-204ENST00000487129 UNC13AQ9UPW8 1703 aa32.48■■■□□ 2.79
PFDN4-204ENST00000487129 DCAF8L2P0C7V8 631 aa32.45■■■□□ 2.79
PFDN4-204ENST00000487129 BICRAQ9NZM4 1560 aa32.36■■■□□ 2.77
PFDN4-204ENST00000487129 MYO15BQ96JP2 1530 aa32.32■■■□□ 2.76
PFDN4-204ENST00000487129 SHROOM4Q9ULL8 1493 aa31.82■■■□□ 2.68
PFDN4-204ENST00000487129 ZCCHC6Q5VYS8 1495 aaKnown RBP31.78■■■□□ 2.68
PFDN4-204ENST00000487129 DCAF1Q9Y4B6 1507 aa31.73■■■□□ 2.67
PFDN4-204ENST00000487129 CC2D2AQ9P2K1 1620 aa31.71■■■□□ 2.67
PFDN4-204ENST00000487129 CECR2Q9BXF3 1484 aa31.69■■■□□ 2.66
PFDN4-204ENST00000487129 EIF4G1Q04637 1599 aaKnown RBP31.55■■■□□ 2.64
PFDN4-204ENST00000487129 SCRIBQ14160 1630 aa31.54■■■□□ 2.64
PFDN4-204ENST00000487129 DNAJC5Q9H3Z4 198 aa31.01■■■□□ 2.55
PFDN4-204ENST00000487129 CUX2O14529 1486 aa30.47■■■□□ 2.47
PFDN4-204ENST00000487129 NCAPD3P42695 1498 aa30.4■■■□□ 2.46
PFDN4-204ENST00000487129 ERCC6Q03468 1493 aa30.29■■■□□ 2.44
PFDN4-204ENST00000487129 ATAD2BQ9ULI0 1458 aa30.24■■■□□ 2.43
PFDN4-204ENST00000487129 HMGXB3Q12766 1538 aa30.12■■■□□ 2.41
PFDN4-204ENST00000487129 NESP48681 1621 aa30.08■■■□□ 2.41
PFDN4-204ENST00000487129 SMARCA4P51532 1647 aa30.07■■■□□ 2.4
PFDN4-204ENST00000487129 SMARCA2P51531 1590 aa30.07■■■□□ 2.4
PFDN4-204ENST00000487129 THOC2Q8NI27 1593 aaKnown RBP29.89■■■□□ 2.38
PFDN4-204ENST00000487129 BAZ1BQ9UIG0 1483 aaKnown RBP29.86■■■□□ 2.37
PFDN4-204ENST00000487129 PEG3Q9GZU2 1588 aa29.82■■■□□ 2.36
PFDN4-204ENST00000487129 BAZ1AQ9NRL2 1556 aaPredicted RBP29.82■■■□□ 2.36
PFDN4-204ENST00000487129 LAMC3Q9Y6N6 1575 aa29.74■■■□□ 2.35
PFDN4-204ENST00000487129 MROH2BQ7Z745 1585 aa29.63■■■□□ 2.33
PFDN4-204ENST00000487129 KIF21AQ7Z4S6 1674 aa29.63■■■□□ 2.33
PFDN4-204ENST00000487129 PDS5BQ9NTI5 1447 aa29.55■■■□□ 2.32
PFDN4-204ENST00000487129 CADPSQ9ULU8 1353 aa29.42■■■□□ 2.3
PFDN4-204ENST00000487129 MRC2Q9UBG0 1479 aa29.37■■■□□ 2.29
PFDN4-204ENST00000487129 WDR62O43379 1518 aa29.35■■■□□ 2.29
PFDN4-204ENST00000487129 TRIM41Q8WV44 630 aa29.34■■■□□ 2.29
PFDN4-204ENST00000487129 WIZO95785 1651 aa29.21■■■□□ 2.27
PFDN4-204ENST00000487129 CEP164Q9UPV0 1460 aa29.13■■■□□ 2.25
PFDN4-204ENST00000487129 FANCD2Q9BXW9 1451 aa29.08■■■□□ 2.25
PFDN4-204ENST00000487129 CFTRP13569 1480 aa29.02■■■□□ 2.24
PFDN4-204ENST00000487129 OSCARQ8IYS5 282 aa28.93■■■□□ 2.22
PFDN4-204ENST00000487129 URB2Q14146 1524 aaKnown RBP28.93■■■□□ 2.22
PFDN4-204ENST00000487129 RSF1Q96T23 1441 aaPredicted RBP28.83■■■□□ 2.21
PFDN4-204ENST00000487129 TOP2AP11388 1531 aaKnown RBP28.81■■■□□ 2.2
PFDN4-204ENST00000487129 RIMBP3CA6NJZ7 1639 aa28.68■■■□□ 2.18
PFDN4-204ENST00000487129 RIMBP3BA6NNM3 1639 aa28.68■■■□□ 2.18
PFDN4-204ENST00000487129 RIMBP3Q9UFD9 1639 aa28.68■■■□□ 2.18
PFDN4-204ENST00000487129 ZNF608Q9ULD9 1512 aaPredicted RBP28.64■■■□□ 2.18
PFDN4-204ENST00000487129 PRDM2Q13029 1718 aa28.6■■■□□ 2.17
PFDN4-204ENST00000487129 IFT140Q96RY7 1462 aa28.58■■■□□ 2.17
PFDN4-204ENST00000487129 ARHGEF11O15085 1522 aa28.56■■■□□ 2.16
PFDN4-204ENST00000487129 TOPBP1Q92547 1522 aa28.5■■■□□ 2.15
PFDN4-204ENST00000487129 CCDC88BA6NC98 1476 aa28.49■■■□□ 2.15
PFDN4-204ENST00000487129 EIF4G3O43432 1585 aaKnown RBP28.43■■■□□ 2.14
PFDN4-204ENST00000487129 AEBP2Q6ZN18 517 aaPredicted RBP28.36■■■□□ 2.13
PFDN4-204ENST00000487129 DNMBPQ6XZF7 1577 aa28.33■■■□□ 2.13
PFDN4-204ENST00000487129 ABCC8Q09428 1581 aa28.33■■■□□ 2.12
PFDN4-204ENST00000487129 TARBP1Q13395 1621 aaKnown RBP28.3■■■□□ 2.12
PFDN4-204ENST00000487129 CYB5RLQ6IPT4 315 aa28.29■■■□□ 2.12
PFDN4-204ENST00000487129 AQRO60306 1485 aaKnown RBP eCLIP28.28■■■□□ 2.12
PFDN4-204ENST00000487129 ARAP1Q96P48 1450 aa28.27■■■□□ 2.12
PFDN4-204ENST00000487129 CHD1O14646 1710 aa28.27■■■□□ 2.12
PFDN4-204ENST00000487129 POLA1P09884 1462 aaPredicted RBP28.18■■■□□ 2.1
PFDN4-204ENST00000487129 RAD54L2Q9Y4B4 1467 aa28.08■■■□□ 2.09
PFDN4-204ENST00000487129 FBLN2P98095 1184 aa28.06■■■□□ 2.08
PFDN4-204ENST00000487129 TRHP20396 242 aaPredicted RBP28.05■■■□□ 2.08
PFDN4-204ENST00000487129 TDRD9Q8NDG6 1382 aaKnown RBP28.02■■■□□ 2.08
PFDN4-204ENST00000487129 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
PFDN4-204ENST00000487129 SOGA1O94964 1423 aa27.99■■■□□ 2.07
PFDN4-204ENST00000487129 SNAPC4Q5SXM2 1469 aa27.98■■■□□ 2.07
PFDN4-204ENST00000487129 WDR97A6NE52 1622 aa27.92■■■□□ 2.06
PFDN4-204ENST00000487129 FGD5Q6ZNL6 1462 aa27.92■■■□□ 2.06
PFDN4-204ENST00000487129 MAGI1Q96QZ7 1491 aaPredicted RBP27.87■■■□□ 2.05
PFDN4-204ENST00000487129 CUX1P39880 1505 aa27.86■■■□□ 2.05
PFDN4-204ENST00000487129 SYNJ1O43426 1573 aa27.85■■■□□ 2.05
PFDN4-204ENST00000487129 GRIN2BQ13224 1484 aa27.82■■■□□ 2.04
PFDN4-204ENST00000487129 CHMP7Q8WUX9 453 aaPredicted RBP27.8■■■□□ 2.04
PFDN4-204ENST00000487129 SYNJ2O15056 1496 aa27.79■■■□□ 2.04
PFDN4-204ENST00000487129 GAPVD1Q14C86 1478 aa27.69■■■□□ 2.02
PFDN4-204ENST00000487129 PBRM1Q86U86 1689 aa27.66■■■□□ 2.02
PFDN4-204ENST00000487129 ABCA5Q8WWZ7 1642 aa27.61■■■□□ 2.01
PFDN4-204ENST00000487129 ABCA10Q8WWZ4 1543 aa27.59■■■□□ 2.01
PFDN4-204ENST00000487129 ERCC6L2Q5T890 1561 aa27.56■■■□□ 2
PFDN4-204ENST00000487129 GRIN2AQ12879 1464 aa27.48■■□□□ 1.99
PFDN4-204ENST00000487129 NUP160Q12769 1436 aa27.45■■□□□ 1.98
PFDN4-204ENST00000487129 CEP170Q5SW79 1584 aa27.43■■□□□ 1.98
PFDN4-204ENST00000487129 ADAMTS12P58397 1594 aa27.43■■□□□ 1.98
PFDN4-204ENST00000487129 SHROOM2Q13796 1616 aa27.38■■□□□ 1.97
PFDN4-204ENST00000487129 WRNQ14191 1432 aaPredicted RBP eCLIP27.33■■□□□ 1.96
PFDN4-204ENST00000487129 FHAD1B1AJZ9 1412 aa27.29■■□□□ 1.96
PFDN4-204ENST00000487129 BIVM-ERCC5R4GMW8 1640 aa27.25■■□□□ 1.95
PFDN4-204ENST00000487129 TOP2BQ02880 1626 aa27.24■■□□□ 1.95
PFDN4-204ENST00000487129 KIF13AQ9H1H9 1805 aa27.23■■□□□ 1.95
PFDN4-204ENST00000487129 ERICH3Q5RHP9 1530 aa27.21■■□□□ 1.95
PFDN4-204ENST00000487129 PRG4Q92954 1404 aaPredicted RBP27.16■■□□□ 1.94
PFDN4-204ENST00000487129 JPH4Q96JJ6 628 aa27.07■■□□□ 1.92
PFDN4-204ENST00000487129 RUSC2Q8N2Y8 1516 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms