RNA–Protein interactions for RNA: ENST00000487091.1

CLIP2-206, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best)

Gene CLIP2, Length 989 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-206ENST00000487091 NISCHQ9Y2I1 1504 aa47.24■■■■■ 5.15
CLIP2-206ENST00000487091 CCDC180Q9P1Z9 1646 aa42.21■■■■■ 4.35
CLIP2-206ENST00000487091 ABCC9O60706 1549 aa41.79■■■■■ 4.28
CLIP2-206ENST00000487091 RB1CC1Q8TDY2 1594 aa40■■■■□ 3.99
CLIP2-206ENST00000487091 NACADO15069 1562 aa39.84■■■■□ 3.97
CLIP2-206ENST00000487091 DCAF8L2P0C7V8 631 aa39.67■■■■□ 3.94
CLIP2-206ENST00000487091 MYO15BQ96JP2 1530 aa39.46■■■■□ 3.91
CLIP2-206ENST00000487091 ZCCHC6Q5VYS8 1495 aaKnown RBP39.22■■■■□ 3.87
CLIP2-206ENST00000487091 DCAF1Q9Y4B6 1507 aa39.09■■■■□ 3.85
CLIP2-206ENST00000487091 UNC13AQ9UPW8 1703 aa39.05■■■■□ 3.84
CLIP2-206ENST00000487091 PABPN1Q86U42 306 aaKnown RBP eCLIP38.97■■■■□ 3.83
CLIP2-206ENST00000487091 DNAJC5BQ9UF47 199 aa38.86■■■■□ 3.81
CLIP2-206ENST00000487091 BICRAQ9NZM4 1560 aa38.79■■■■□ 3.8
CLIP2-206ENST00000487091 SCRIBQ14160 1630 aa38.42■■■■□ 3.74
CLIP2-206ENST00000487091 SHROOM4Q9ULL8 1493 aa38.38■■■■□ 3.73
CLIP2-206ENST00000487091 EIF4G1Q04637 1599 aaKnown RBP37.81■■■■□ 3.64
CLIP2-206ENST00000487091 CC2D2AQ9P2K1 1620 aa37.78■■■■□ 3.64
CLIP2-206ENST00000487091 CECR2Q9BXF3 1484 aa37.63■■■■□ 3.61
CLIP2-206ENST00000487091 NCAPD3P42695 1498 aa36.78■■■■□ 3.48
CLIP2-206ENST00000487091 SMARCA4P51532 1647 aa36.74■■■■□ 3.47
CLIP2-206ENST00000487091 ATAD2BQ9ULI0 1458 aa36.7■■■■□ 3.47
CLIP2-206ENST00000487091 BAZ1AQ9NRL2 1556 aaPredicted RBP36.65■■■■□ 3.46
CLIP2-206ENST00000487091 SMARCA2P51531 1590 aa36.63■■■■□ 3.45
CLIP2-206ENST00000487091 HMGXB3Q12766 1538 aa36.52■■■■□ 3.44
CLIP2-206ENST00000487091 PEG3Q9GZU2 1588 aa36.42■■■■□ 3.42
CLIP2-206ENST00000487091 MROH2BQ7Z745 1585 aa36.37■■■■□ 3.41
CLIP2-206ENST00000487091 BAZ1BQ9UIG0 1483 aaKnown RBP36.35■■■■□ 3.41
CLIP2-206ENST00000487091 ERCC6Q03468 1493 aa36.06■■■■□ 3.36
CLIP2-206ENST00000487091 NESP48681 1621 aa36■■■■□ 3.35
CLIP2-206ENST00000487091 WIZO95785 1651 aa35.94■■■■□ 3.34
CLIP2-206ENST00000487091 CUX2O14529 1486 aa35.91■■■■□ 3.34
CLIP2-206ENST00000487091 LAMC3Q9Y6N6 1575 aa35.87■■■■□ 3.33
CLIP2-206ENST00000487091 RSF1Q96T23 1441 aaPredicted RBP35.79■■■■□ 3.32
CLIP2-206ENST00000487091 CADPSQ9ULU8 1353 aa35.68■■■■□ 3.3
CLIP2-206ENST00000487091 PDS5BQ9NTI5 1447 aa35.67■■■■□ 3.3
CLIP2-206ENST00000487091 THOC2Q8NI27 1593 aaKnown RBP35.56■■■■□ 3.28
CLIP2-206ENST00000487091 KIF21AQ7Z4S6 1674 aa35.55■■■■□ 3.28
CLIP2-206ENST00000487091 TOP2AP11388 1531 aaKnown RBP35.54■■■■□ 3.28
CLIP2-206ENST00000487091 DNAJC5Q9H3Z4 198 aa35.46■■■■□ 3.27
CLIP2-206ENST00000487091 CFTRP13569 1480 aa35.35■■■■□ 3.25
CLIP2-206ENST00000487091 MRC2Q9UBG0 1479 aa35.3■■■■□ 3.24
CLIP2-206ENST00000487091 FANCD2Q9BXW9 1451 aa35.24■■■■□ 3.23
CLIP2-206ENST00000487091 CEP164Q9UPV0 1460 aa35.24■■■■□ 3.23
CLIP2-206ENST00000487091 WDR62O43379 1518 aa35.2■■■■□ 3.23
CLIP2-206ENST00000487091 CCDC88BA6NC98 1476 aa35.14■■■■□ 3.22
CLIP2-206ENST00000487091 PRDM2Q13029 1718 aa35■■■■□ 3.19
CLIP2-206ENST00000487091 URB2Q14146 1524 aaKnown RBP34.91■■■■□ 3.18
CLIP2-206ENST00000487091 ABCC8Q09428 1581 aa34.63■■■■□ 3.13
CLIP2-206ENST00000487091 TOPBP1Q92547 1522 aa34.62■■■■□ 3.13
CLIP2-206ENST00000487091 IFT140Q96RY7 1462 aa34.54■■■■□ 3.12
CLIP2-206ENST00000487091 DNMBPQ6XZF7 1577 aa34.53■■■■□ 3.12
CLIP2-206ENST00000487091 SUPT5HO00267 1087 aaKnown RBP34.47■■■■□ 3.11
CLIP2-206ENST00000487091 ZNF608Q9ULD9 1512 aaPredicted RBP34.4■■■■□ 3.1
CLIP2-206ENST00000487091 OSCARQ8IYS5 282 aa34.35■■■■□ 3.09
CLIP2-206ENST00000487091 POLA1P09884 1462 aaPredicted RBP34.28■■■■□ 3.08
CLIP2-206ENST00000487091 TARBP1Q13395 1621 aaKnown RBP34.27■■■■□ 3.08
CLIP2-206ENST00000487091 EIF4G3O43432 1585 aaKnown RBP34.23■■■■□ 3.07
CLIP2-206ENST00000487091 SOGA1O94964 1423 aa34.16■■■■□ 3.06
CLIP2-206ENST00000487091 CUX1P39880 1505 aa34.15■■■■□ 3.06
CLIP2-206ENST00000487091 AQRO60306 1485 aaKnown RBP eCLIP34.15■■■■□ 3.06
CLIP2-206ENST00000487091 RAD54L2Q9Y4B4 1467 aa34.14■■■■□ 3.06
CLIP2-206ENST00000487091 FGD5Q6ZNL6 1462 aa34.12■■■■□ 3.05
CLIP2-206ENST00000487091 TDRD9Q8NDG6 1382 aaKnown RBP34.01■■■■□ 3.04
CLIP2-206ENST00000487091 WDR97A6NE52 1622 aa34.01■■■■□ 3.03
CLIP2-206ENST00000487091 TRIM41Q8WV44 630 aa33.99■■■■□ 3.03
CLIP2-206ENST00000487091 CHD1O14646 1710 aa33.9■■■■□ 3.02
CLIP2-206ENST00000487091 FBLN2P98095 1184 aa33.85■■■■□ 3.01
CLIP2-206ENST00000487091 GRIN2BQ13224 1484 aa33.82■■■■□ 3
CLIP2-206ENST00000487091 SNAPC4Q5SXM2 1469 aa33.82■■■■□ 3
CLIP2-206ENST00000487091 RIMBP3CA6NJZ7 1639 aa33.79■■■■□ 3
CLIP2-206ENST00000487091 RIMBP3BA6NNM3 1639 aa33.79■■■■□ 3
CLIP2-206ENST00000487091 RIMBP3Q9UFD9 1639 aa33.79■■■■□ 3
CLIP2-206ENST00000487091 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
CLIP2-206ENST00000487091 MAGI1Q96QZ7 1491 aaPredicted RBP33.78■■■■□ 3
CLIP2-206ENST00000487091 WRNQ14191 1432 aaPredicted RBP eCLIP33.76■■■□□ 2.99
CLIP2-206ENST00000487091 GAPVD1Q14C86 1478 aa33.75■■■□□ 2.99
CLIP2-206ENST00000487091 ARHGEF11O15085 1522 aa33.74■■■□□ 2.99
CLIP2-206ENST00000487091 TOP2BQ02880 1626 aa33.73■■■□□ 2.99
CLIP2-206ENST00000487091 BIVM-ERCC5R4GMW8 1640 aa33.72■■■□□ 2.99
CLIP2-206ENST00000487091 CHMP7Q8WUX9 453 aaPredicted RBP33.7■■■□□ 2.99
CLIP2-206ENST00000487091 ABCA5Q8WWZ7 1642 aa33.67■■■□□ 2.98
CLIP2-206ENST00000487091 PBRM1Q86U86 1689 aa33.67■■■□□ 2.98
CLIP2-206ENST00000487091 SYNJ1O43426 1573 aa33.66■■■□□ 2.98
CLIP2-206ENST00000487091 SYNJ2O15056 1496 aa33.65■■■□□ 2.98
CLIP2-206ENST00000487091 CLASP1Q7Z460 1538 aa33.54■■■□□ 2.96
CLIP2-206ENST00000487091 CYB5RLQ6IPT4 315 aa33.49■■■□□ 2.95
CLIP2-206ENST00000487091 ARAP1Q96P48 1450 aa33.44■■■□□ 2.94
CLIP2-206ENST00000487091 ADAMTS12P58397 1594 aa33.38■■■□□ 2.93
CLIP2-206ENST00000487091 ERICH3Q5RHP9 1530 aa33.38■■■□□ 2.93
CLIP2-206ENST00000487091 GRIN2AQ12879 1464 aa33.37■■■□□ 2.93
CLIP2-206ENST00000487091 FHAD1B1AJZ9 1412 aa33.35■■■□□ 2.93
CLIP2-206ENST00000487091 NUP160Q12769 1436 aa33.26■■■□□ 2.91
CLIP2-206ENST00000487091 CEP170Q5SW79 1584 aa33.2■■■□□ 2.91
CLIP2-206ENST00000487091 KIF27Q86VH2 1401 aa33.11■■■□□ 2.89
CLIP2-206ENST00000487091 IGF1RP08069 1367 aa33.05■■■□□ 2.88
CLIP2-206ENST00000487091 SHROOM2Q13796 1616 aa33.05■■■□□ 2.88
CLIP2-206ENST00000487091 ERCC6L2Q5T890 1561 aa33.01■■■□□ 2.88
CLIP2-206ENST00000487091 TRHP20396 242 aaPredicted RBP32.97■■■□□ 2.87
CLIP2-206ENST00000487091 CUL7Q14999 1698 aa32.95■■■□□ 2.87
CLIP2-206ENST00000487091 JPH4Q96JJ6 628 aa32.95■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms