RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 NISCHQ9Y2I1 1504 aa22.74■■□□□ 1.23
MCF2L-227ENST00000486806 CCDC180Q9P1Z9 1646 aa20.05■□□□□ 0.8
MCF2L-227ENST00000486806 ABCC9O60706 1549 aa19.21■□□□□ 0.67
MCF2L-227ENST00000486806 ZCCHC6Q5VYS8 1495 aaKnown RBP19.07■□□□□ 0.64
MCF2L-227ENST00000486806 DCAF1Q9Y4B6 1507 aa18.87■□□□□ 0.61
MCF2L-227ENST00000486806 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
MCF2L-227ENST00000486806 NACADO15069 1562 aa18.75■□□□□ 0.59
MCF2L-227ENST00000486806 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
MCF2L-227ENST00000486806 RB1CC1Q8TDY2 1594 aa18.66■□□□□ 0.58
MCF2L-227ENST00000486806 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
MCF2L-227ENST00000486806 UNC13AQ9UPW8 1703 aa18.22■□□□□ 0.51
MCF2L-227ENST00000486806 SHROOM4Q9ULL8 1493 aa18.13■□□□□ 0.49
MCF2L-227ENST00000486806 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
MCF2L-227ENST00000486806 PABPN1Q86U42 306 aaKnown RBP eCLIP17.98■□□□□ 0.47
MCF2L-227ENST00000486806 CECR2Q9BXF3 1484 aa17.67■□□□□ 0.42
MCF2L-227ENST00000486806 EIF4G1Q04637 1599 aaKnown RBP17.6■□□□□ 0.41
MCF2L-227ENST00000486806 BAZ1AQ9NRL2 1556 aaPredicted RBP17.59■□□□□ 0.41
MCF2L-227ENST00000486806 SMARCA4P51532 1647 aa17.56■□□□□ 0.4
MCF2L-227ENST00000486806 MROH2BQ7Z745 1585 aa17.53■□□□□ 0.4
MCF2L-227ENST00000486806 RSF1Q96T23 1441 aaPredicted RBP17.47■□□□□ 0.39
MCF2L-227ENST00000486806 PEG3Q9GZU2 1588 aa17.42■□□□□ 0.38
MCF2L-227ENST00000486806 CC2D2AQ9P2K1 1620 aa17.41■□□□□ 0.38
MCF2L-227ENST00000486806 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
MCF2L-227ENST00000486806 SMARCA2P51531 1590 aa17.36■□□□□ 0.37
MCF2L-227ENST00000486806 WIZO95785 1651 aa17.33■□□□□ 0.37
MCF2L-227ENST00000486806 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
MCF2L-227ENST00000486806 HMGXB3Q12766 1538 aa17.28■□□□□ 0.36
MCF2L-227ENST00000486806 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.36
MCF2L-227ENST00000486806 BAZ1BQ9UIG0 1483 aaKnown RBP17.24■□□□□ 0.35
MCF2L-227ENST00000486806 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.35
MCF2L-227ENST00000486806 SUPT5HO00267 1087 aaKnown RBP17.2■□□□□ 0.34
MCF2L-227ENST00000486806 CCDC88BA6NC98 1476 aa16.98■□□□□ 0.31
MCF2L-227ENST00000486806 CFTRP13569 1480 aa16.81■□□□□ 0.28
MCF2L-227ENST00000486806 CADPSQ9ULU8 1353 aa16.8■□□□□ 0.28
MCF2L-227ENST00000486806 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.28
MCF2L-227ENST00000486806 NESP48681 1621 aa16.75■□□□□ 0.27
MCF2L-227ENST00000486806 PRDM2Q13029 1718 aa16.67■□□□□ 0.26
MCF2L-227ENST00000486806 PDS5BQ9NTI5 1447 aa16.63■□□□□ 0.25
MCF2L-227ENST00000486806 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
MCF2L-227ENST00000486806 CEP164Q9UPV0 1460 aa16.55■□□□□ 0.24
MCF2L-227ENST00000486806 KIF21AQ7Z4S6 1674 aa16.55■□□□□ 0.24
MCF2L-227ENST00000486806 ERCC6Q03468 1493 aa16.51■□□□□ 0.23
MCF2L-227ENST00000486806 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
MCF2L-227ENST00000486806 MRC2Q9UBG0 1479 aa16.47■□□□□ 0.23
MCF2L-227ENST00000486806 THOC2Q8NI27 1593 aaKnown RBP16.46■□□□□ 0.23
MCF2L-227ENST00000486806 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
MCF2L-227ENST00000486806 URB2Q14146 1524 aaKnown RBP16.44■□□□□ 0.22
MCF2L-227ENST00000486806 CUX1P39880 1505 aa16.43■□□□□ 0.22
MCF2L-227ENST00000486806 WDR62O43379 1518 aa16.42■□□□□ 0.22
MCF2L-227ENST00000486806 DNMBPQ6XZF7 1577 aa16.42■□□□□ 0.22
MCF2L-227ENST00000486806 SYNJ1O43426 1573 aa16.41■□□□□ 0.22
MCF2L-227ENST00000486806 TOPBP1Q92547 1522 aa16.4■□□□□ 0.22
MCF2L-227ENST00000486806 TOP2BQ02880 1626 aa16.38■□□□□ 0.21
MCF2L-227ENST00000486806 BIVM-ERCC5R4GMW8 1640 aa16.37■□□□□ 0.21
MCF2L-227ENST00000486806 CHIC1Q5VXU3 224 aa16.32■□□□□ 0.2
MCF2L-227ENST00000486806 FGD5Q6ZNL6 1462 aa16.3■□□□□ 0.2
MCF2L-227ENST00000486806 POLA1P09884 1462 aaPredicted RBP16.29■□□□□ 0.2
MCF2L-227ENST00000486806 CUX2O14529 1486 aa16.26■□□□□ 0.19
MCF2L-227ENST00000486806 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
MCF2L-227ENST00000486806 TARBP1Q13395 1621 aaKnown RBP16.2■□□□□ 0.18
MCF2L-227ENST00000486806 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
MCF2L-227ENST00000486806 RAD54L2Q9Y4B4 1467 aa16.19■□□□□ 0.18
MCF2L-227ENST00000486806 SOGA1O94964 1423 aa16.19■□□□□ 0.18
MCF2L-227ENST00000486806 ABCA10Q8WWZ4 1543 aa16.18■□□□□ 0.18
MCF2L-227ENST00000486806 WDR97A6NE52 1622 aa16.17■□□□□ 0.18
MCF2L-227ENST00000486806 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
MCF2L-227ENST00000486806 ABCA5Q8WWZ7 1642 aa16.09■□□□□ 0.17
MCF2L-227ENST00000486806 EIF4G3O43432 1585 aaKnown RBP16.06■□□□□ 0.16
MCF2L-227ENST00000486806 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
MCF2L-227ENST00000486806 TDRD9Q8NDG6 1382 aaKnown RBP16.05■□□□□ 0.16
MCF2L-227ENST00000486806 RUSC2Q8N2Y8 1516 aa16.04■□□□□ 0.16
MCF2L-227ENST00000486806 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.16
MCF2L-227ENST00000486806 GAPVD1Q14C86 1478 aa16.03■□□□□ 0.16
MCF2L-227ENST00000486806 EEA1Q15075 1411 aa16.02■□□□□ 0.16
MCF2L-227ENST00000486806 ERICH3Q5RHP9 1530 aa15.99■□□□□ 0.15
MCF2L-227ENST00000486806 GRIN2BQ13224 1484 aa15.98■□□□□ 0.15
MCF2L-227ENST00000486806 PBRM1Q86U86 1689 aa15.96■□□□□ 0.15
MCF2L-227ENST00000486806 IGF1RP08069 1367 aa15.95■□□□□ 0.14
MCF2L-227ENST00000486806 SNAPC4Q5SXM2 1469 aa15.92■□□□□ 0.14
MCF2L-227ENST00000486806 MAGI1Q96QZ7 1491 aaPredicted RBP15.91■□□□□ 0.14
MCF2L-227ENST00000486806 ADAMTS12P58397 1594 aa15.91■□□□□ 0.14
MCF2L-227ENST00000486806 PRXQ9BXM0 1461 aa15.9■□□□□ 0.14
MCF2L-227ENST00000486806 CUL7Q14999 1698 aa15.89■□□□□ 0.13
MCF2L-227ENST00000486806 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
MCF2L-227ENST00000486806 FAM9AQ8IZU1 332 aaPredicted RBP15.87■□□□□ 0.13
MCF2L-227ENST00000486806 FHAD1B1AJZ9 1412 aa15.86■□□□□ 0.13
MCF2L-227ENST00000486806 CARMIL1Q5VZK9 1371 aa15.85■□□□□ 0.13
MCF2L-227ENST00000486806 SYNJ2O15056 1496 aa15.84■□□□□ 0.13
MCF2L-227ENST00000486806 KIF21BO75037 1637 aa15.84■□□□□ 0.13
MCF2L-227ENST00000486806 RAPGEF2Q9Y4G8 1499 aa15.82■□□□□ 0.12
MCF2L-227ENST00000486806 GRIN2AQ12879 1464 aa15.79■□□□□ 0.12
MCF2L-227ENST00000486806 GOLGA3Q08378 1498 aa15.77■□□□□ 0.11
MCF2L-227ENST00000486806 CHD1O14646 1710 aa15.74■□□□□ 0.11
MCF2L-227ENST00000486806 NUP160Q12769 1436 aa15.73■□□□□ 0.11
MCF2L-227ENST00000486806 CHMP7Q8WUX9 453 aaPredicted RBP15.72■□□□□ 0.11
MCF2L-227ENST00000486806 CEP170Q5SW79 1584 aa15.7■□□□□ 0.1
MCF2L-227ENST00000486806 FBLN2P98095 1184 aa15.68■□□□□ 0.1
MCF2L-227ENST00000486806 CLASP1Q7Z460 1538 aa15.64■□□□□ 0.09
MCF2L-227ENST00000486806 KIAA0586Q9BVV6 1533 aa15.63■□□□□ 0.09
MCF2L-227ENST00000486806 CTTNBP2Q8WZ74 1663 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms