RNA–Protein interactions for RNA: ENST00000486506.5

MECP2-209, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 5

Gene MECP2, Length 2,907 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-209ENST00000486506 NISCHQ9Y2I1 1504 aa16.55■□□□□ 0.24
MECP2-209ENST00000486506 CCDC180Q9P1Z9 1646 aa14.4□□□□□ -0.1
MECP2-209ENST00000486506 PELP1Q8IZL8 1130 aaKnown RBP14.11□□□□□ -0.15
MECP2-209ENST00000486506 MYT1Q01538 1121 aa13.95□□□□□ -0.18
MECP2-209ENST00000486506 ABCC9O60706 1549 aa13.93□□□□□ -0.18
MECP2-209ENST00000486506 DCAF8L2P0C7V8 631 aa13.92□□□□□ -0.18
MECP2-209ENST00000486506 ZCCHC6Q5VYS8 1495 aaKnown RBP13.86□□□□□ -0.19
MECP2-209ENST00000486506 DCAF1Q9Y4B6 1507 aa13.61□□□□□ -0.23
MECP2-209ENST00000486506 SHROOM4Q9ULL8 1493 aa13.56□□□□□ -0.24
MECP2-209ENST00000486506 MYO15BQ96JP2 1530 aa13.5□□□□□ -0.25
MECP2-209ENST00000486506 NACADO15069 1562 aa13.49□□□□□ -0.25
MECP2-209ENST00000486506 TTBK1Q5TCY1 1321 aaPredicted RBP13.45□□□□□ -0.26
MECP2-209ENST00000486506 RB1CC1Q8TDY2 1594 aa13.43□□□□□ -0.26
MECP2-209ENST00000486506 SCRIBQ14160 1630 aa13.34□□□□□ -0.27
MECP2-209ENST00000486506 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
MECP2-209ENST00000486506 UNC13AQ9UPW8 1703 aa13.12□□□□□ -0.31
MECP2-209ENST00000486506 BICRAQ9NZM4 1560 aa13.05□□□□□ -0.32
MECP2-209ENST00000486506 SUPT5HO00267 1087 aaKnown RBP13.02□□□□□ -0.32
MECP2-209ENST00000486506 CECR2Q9BXF3 1484 aa12.94□□□□□ -0.34
MECP2-209ENST00000486506 HRCP23327 699 aa12.92□□□□□ -0.34
MECP2-209ENST00000486506 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
MECP2-209ENST00000486506 RSF1Q96T23 1441 aaPredicted RBP12.83□□□□□ -0.36
MECP2-209ENST00000486506 MROH2BQ7Z745 1585 aa12.82□□□□□ -0.36
MECP2-209ENST00000486506 ERICH6Q7L0X2 663 aa12.78□□□□□ -0.36
MECP2-209ENST00000486506 BAZ1AQ9NRL2 1556 aaPredicted RBP12.78□□□□□ -0.36
MECP2-209ENST00000486506 SMARCA4P51532 1647 aa12.74□□□□□ -0.37
MECP2-209ENST00000486506 APLP2Q06481 763 aa12.7□□□□□ -0.38
MECP2-209ENST00000486506 WIZO95785 1651 aa12.68□□□□□ -0.38
MECP2-209ENST00000486506 EIF4G1Q04637 1599 aaKnown RBP12.68□□□□□ -0.38
MECP2-209ENST00000486506 SCAF1Q9H7N4 1312 aaKnown RBP12.66□□□□□ -0.38
MECP2-209ENST00000486506 ATAD2BQ9ULI0 1458 aa12.6□□□□□ -0.39
MECP2-209ENST00000486506 SLC24A1O60721 1099 aa12.6□□□□□ -0.39
MECP2-209ENST00000486506 BCL11AQ9H165 835 aa12.6□□□□□ -0.39
MECP2-209ENST00000486506 PEG3Q9GZU2 1588 aa12.55□□□□□ -0.4
MECP2-209ENST00000486506 SMARCA2P51531 1590 aa12.54□□□□□ -0.4
MECP2-209ENST00000486506 CC2D2AQ9P2K1 1620 aa12.53□□□□□ -0.4
MECP2-209ENST00000486506 BAZ1BQ9UIG0 1483 aaKnown RBP12.52□□□□□ -0.4
MECP2-209ENST00000486506 TOP2AP11388 1531 aaKnown RBP12.51□□□□□ -0.41
MECP2-209ENST00000486506 NCAPD3P42695 1498 aa12.5□□□□□ -0.41
MECP2-209ENST00000486506 DNAJC5BQ9UF47 199 aa12.48□□□□□ -0.41
MECP2-209ENST00000486506 CCDC88BA6NC98 1476 aa12.44□□□□□ -0.42
MECP2-209ENST00000486506 HMGXB3Q12766 1538 aa12.43□□□□□ -0.42
MECP2-209ENST00000486506 FAM9AQ8IZU1 332 aaPredicted RBP12.4□□□□□ -0.42
MECP2-209ENST00000486506 PPARGC1BQ86YN6 1023 aaKnown RBP12.36□□□□□ -0.43
MECP2-209ENST00000486506 CENPBP07199 599 aaPredicted RBP12.31□□□□□ -0.44
MECP2-209ENST00000486506 CHIC1Q5VXU3 224 aa12.3□□□□□ -0.44
MECP2-209ENST00000486506 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
MECP2-209ENST00000486506 PCGF6Q9BYE7 350 aa12.21□□□□□ -0.45
MECP2-209ENST00000486506 CADPSQ9ULU8 1353 aa12.21□□□□□ -0.46
MECP2-209ENST00000486506 CFTRP13569 1480 aa12.19□□□□□ -0.46
MECP2-209ENST00000486506 NESP48681 1621 aa12.18□□□□□ -0.46
MECP2-209ENST00000486506 TRIM41Q8WV44 630 aa12.17□□□□□ -0.46
MECP2-209ENST00000486506 DAXXQ9UER7 740 aaPredicted RBP12.16□□□□□ -0.46
MECP2-209ENST00000486506 ABCC8Q09428 1581 aa12.15□□□□□ -0.46
MECP2-209ENST00000486506 ACIN1Q9UKV3 1341 aaKnown RBP12.14□□□□□ -0.47
MECP2-209ENST00000486506 WRNQ14191 1432 aaPredicted RBP eCLIP12.08□□□□□ -0.48
MECP2-209ENST00000486506 FANCD2Q9BXW9 1451 aa12.06□□□□□ -0.48
MECP2-209ENST00000486506 LAMC3Q9Y6N6 1575 aa12.06□□□□□ -0.48
MECP2-209ENST00000486506 PDS5BQ9NTI5 1447 aa12.03□□□□□ -0.48
MECP2-209ENST00000486506 LOC105371045A0A1W2PR82 267 aa12.03□□□□□ -0.48
MECP2-209ENST00000486506 ANP32EQ9BTT0 268 aa12.02□□□□□ -0.49
MECP2-209ENST00000486506 SYNJ1O43426 1573 aa12.01□□□□□ -0.49
MECP2-209ENST00000486506 GTF3C3Q9Y5Q9 886 aa12□□□□□ -0.49
MECP2-209ENST00000486506 ZEB1P37275 1124 aaPredicted RBP11.99□□□□□ -0.49
MECP2-209ENST00000486506 CEP164Q9UPV0 1460 aa11.99□□□□□ -0.49
MECP2-209ENST00000486506 PRDM2Q13029 1718 aa11.98□□□□□ -0.49
MECP2-209ENST00000486506 CUX1P39880 1505 aa11.98□□□□□ -0.49
MECP2-209ENST00000486506 NEUROD1Q13562 356 aa11.96□□□□□ -0.49
MECP2-209ENST00000486506 ERCC6Q03468 1493 aa11.94□□□□□ -0.5
MECP2-209ENST00000486506 KIF21AQ7Z4S6 1674 aa11.94□□□□□ -0.5
MECP2-209ENST00000486506 TOP2BQ02880 1626 aa11.94□□□□□ -0.5
MECP2-209ENST00000486506 SOGA1O94964 1423 aa11.92□□□□□ -0.5
MECP2-209ENST00000486506 EIF5BO60841 1220 aaKnown RBP11.92□□□□□ -0.5
MECP2-209ENST00000486506 URB2Q14146 1524 aaKnown RBP11.92□□□□□ -0.5
MECP2-209ENST00000486506 TOPBP1Q92547 1522 aa11.9□□□□□ -0.5
MECP2-209ENST00000486506 BIVM-ERCC5R4GMW8 1640 aa11.89□□□□□ -0.51
MECP2-209ENST00000486506 RUSC2Q8N2Y8 1516 aa11.89□□□□□ -0.51
MECP2-209ENST00000486506 FGD5Q6ZNL6 1462 aa11.88□□□□□ -0.51
MECP2-209ENST00000486506 DNMBPQ6XZF7 1577 aa11.87□□□□□ -0.51
MECP2-209ENST00000486506 MRC2Q9UBG0 1479 aa11.86□□□□□ -0.51
MECP2-209ENST00000486506 CUX2O14529 1486 aa11.86□□□□□ -0.51
MECP2-209ENST00000486506 POLA1P09884 1462 aaPredicted RBP11.85□□□□□ -0.51
MECP2-209ENST00000486506 RAD54L2Q9Y4B4 1467 aa11.85□□□□□ -0.51
MECP2-209ENST00000486506 CSRNP3Q8WYN3 585 aa11.82□□□□□ -0.52
MECP2-209ENST00000486506 TRIM26Q12899 539 aaPredicted RBP11.81□□□□□ -0.52
MECP2-209ENST00000486506 WDR62O43379 1518 aa11.78□□□□□ -0.52
MECP2-209ENST00000486506 KIF27Q86VH2 1401 aa11.78□□□□□ -0.52
MECP2-209ENST00000486506 TDRD9Q8NDG6 1382 aaKnown RBP11.77□□□□□ -0.52
MECP2-209ENST00000486506 THOC2Q8NI27 1593 aaKnown RBP11.77□□□□□ -0.52
MECP2-209ENST00000486506 UBE2Q2Q8WVN8 375 aa11.77□□□□□ -0.53
MECP2-209ENST00000486506 EEA1Q15075 1411 aa11.77□□□□□ -0.53
MECP2-209ENST00000486506 RANGAP1P46060 587 aaPredicted RBP11.75□□□□□ -0.53
MECP2-209ENST00000486506 ABCA10Q8WWZ4 1543 aa11.74□□□□□ -0.53
MECP2-209ENST00000486506 IGF1RP08069 1367 aa11.71□□□□□ -0.53
MECP2-209ENST00000486506 AQRO60306 1485 aaKnown RBP eCLIP11.71□□□□□ -0.54
MECP2-209ENST00000486506 TARBP1Q13395 1621 aaKnown RBP11.7□□□□□ -0.54
MECP2-209ENST00000486506 UBTFP17480 764 aaKnown RBP11.7□□□□□ -0.54
MECP2-209ENST00000486506 ZNF608Q9ULD9 1512 aaPredicted RBP11.7□□□□□ -0.54
MECP2-209ENST00000486506 IFT140Q96RY7 1462 aa11.69□□□□□ -0.54
MECP2-209ENST00000486506 GAPVD1Q14C86 1478 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms