RNA–Protein interactions for RNA: ENST00000486210.1

MCF2L-226, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 548 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-226ENST00000486210 NISCHQ9Y2I1 1504 aa44.26■■■■■ 4.68
MCF2L-226ENST00000486210 ABCC9O60706 1549 aa40.28■■■■■ 4.04
MCF2L-226ENST00000486210 CCDC180Q9P1Z9 1646 aa39.91■■■■□ 3.98
MCF2L-226ENST00000486210 DNAJC5BQ9UF47 199 aa38.19■■■■□ 3.7
MCF2L-226ENST00000486210 RB1CC1Q8TDY2 1594 aa38.14■■■■□ 3.7
MCF2L-226ENST00000486210 NACADO15069 1562 aa37.79■■■■□ 3.64
MCF2L-226ENST00000486210 DCAF8L2P0C7V8 631 aa37.43■■■■□ 3.58
MCF2L-226ENST00000486210 PABPN1Q86U42 306 aaKnown RBP eCLIP37.42■■■■□ 3.58
MCF2L-226ENST00000486210 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
MCF2L-226ENST00000486210 BICRAQ9NZM4 1560 aa37.14■■■■□ 3.54
MCF2L-226ENST00000486210 MYO15BQ96JP2 1530 aa37.14■■■■□ 3.54
MCF2L-226ENST00000486210 ZCCHC6Q5VYS8 1495 aaKnown RBP36.61■■■■□ 3.45
MCF2L-226ENST00000486210 DCAF1Q9Y4B6 1507 aa36.53■■■■□ 3.44
MCF2L-226ENST00000486210 SHROOM4Q9ULL8 1493 aa36.5■■■■□ 3.43
MCF2L-226ENST00000486210 CC2D2AQ9P2K1 1620 aa36.4■■■■□ 3.42
MCF2L-226ENST00000486210 SCRIBQ14160 1630 aa36.34■■■■□ 3.41
MCF2L-226ENST00000486210 CECR2Q9BXF3 1484 aa36.31■■■■□ 3.4
MCF2L-226ENST00000486210 EIF4G1Q04637 1599 aaKnown RBP36.21■■■■□ 3.39
MCF2L-226ENST00000486210 DNAJC5Q9H3Z4 198 aa35.3■■■■□ 3.24
MCF2L-226ENST00000486210 NCAPD3P42695 1498 aa34.9■■■■□ 3.18
MCF2L-226ENST00000486210 CUX2O14529 1486 aa34.86■■■■□ 3.17
MCF2L-226ENST00000486210 ERCC6Q03468 1493 aa34.75■■■■□ 3.15
MCF2L-226ENST00000486210 ATAD2BQ9ULI0 1458 aa34.75■■■■□ 3.15
MCF2L-226ENST00000486210 SMARCA4P51532 1647 aa34.63■■■■□ 3.13
MCF2L-226ENST00000486210 HMGXB3Q12766 1538 aa34.61■■■■□ 3.13
MCF2L-226ENST00000486210 SMARCA2P51531 1590 aa34.59■■■■□ 3.13
MCF2L-226ENST00000486210 NESP48681 1621 aa34.53■■■■□ 3.12
MCF2L-226ENST00000486210 BAZ1AQ9NRL2 1556 aaPredicted RBP34.36■■■■□ 3.09
MCF2L-226ENST00000486210 BAZ1BQ9UIG0 1483 aaKnown RBP34.35■■■■□ 3.09
MCF2L-226ENST00000486210 PEG3Q9GZU2 1588 aa34.31■■■■□ 3.08
MCF2L-226ENST00000486210 THOC2Q8NI27 1593 aaKnown RBP34.28■■■■□ 3.08
MCF2L-226ENST00000486210 LAMC3Q9Y6N6 1575 aa34.18■■■■□ 3.06
MCF2L-226ENST00000486210 MROH2BQ7Z745 1585 aa34.13■■■■□ 3.05
MCF2L-226ENST00000486210 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
MCF2L-226ENST00000486210 PDS5BQ9NTI5 1447 aa33.94■■■■□ 3.02
MCF2L-226ENST00000486210 CADPSQ9ULU8 1353 aa33.8■■■■□ 3
MCF2L-226ENST00000486210 WIZO95785 1651 aa33.72■■■□□ 2.99
MCF2L-226ENST00000486210 MRC2Q9UBG0 1479 aa33.71■■■□□ 2.99
MCF2L-226ENST00000486210 WDR62O43379 1518 aa33.69■■■□□ 2.98
MCF2L-226ENST00000486210 TRIM41Q8WV44 630 aa33.55■■■□□ 2.96
MCF2L-226ENST00000486210 CEP164Q9UPV0 1460 aa33.49■■■□□ 2.95
MCF2L-226ENST00000486210 FANCD2Q9BXW9 1451 aa33.43■■■□□ 2.94
MCF2L-226ENST00000486210 CFTRP13569 1480 aa33.35■■■□□ 2.93
MCF2L-226ENST00000486210 RSF1Q96T23 1441 aaPredicted RBP33.24■■■□□ 2.91
MCF2L-226ENST00000486210 TOP2AP11388 1531 aaKnown RBP33.22■■■□□ 2.91
MCF2L-226ENST00000486210 URB2Q14146 1524 aaKnown RBP33.22■■■□□ 2.91
MCF2L-226ENST00000486210 OSCARQ8IYS5 282 aa33.15■■■□□ 2.9
MCF2L-226ENST00000486210 PRDM2Q13029 1718 aa33.05■■■□□ 2.88
MCF2L-226ENST00000486210 RIMBP3CA6NJZ7 1639 aa32.88■■■□□ 2.85
MCF2L-226ENST00000486210 RIMBP3BA6NNM3 1639 aa32.88■■■□□ 2.85
MCF2L-226ENST00000486210 RIMBP3Q9UFD9 1639 aa32.88■■■□□ 2.85
MCF2L-226ENST00000486210 ZNF608Q9ULD9 1512 aaPredicted RBP32.87■■■□□ 2.85
MCF2L-226ENST00000486210 CCDC88BA6NC98 1476 aa32.85■■■□□ 2.85
MCF2L-226ENST00000486210 IFT140Q96RY7 1462 aa32.84■■■□□ 2.85
MCF2L-226ENST00000486210 TOPBP1Q92547 1522 aa32.77■■■□□ 2.84
MCF2L-226ENST00000486210 ARHGEF11O15085 1522 aa32.7■■■□□ 2.83
MCF2L-226ENST00000486210 EIF4G3O43432 1585 aaKnown RBP32.68■■■□□ 2.82
MCF2L-226ENST00000486210 ABCC8Q09428 1581 aa32.61■■■□□ 2.81
MCF2L-226ENST00000486210 DNMBPQ6XZF7 1577 aa32.61■■■□□ 2.81
MCF2L-226ENST00000486210 TARBP1Q13395 1621 aaKnown RBP32.55■■■□□ 2.8
MCF2L-226ENST00000486210 CHD1O14646 1710 aa32.54■■■□□ 2.8
MCF2L-226ENST00000486210 AQRO60306 1485 aaKnown RBP eCLIP32.5■■■□□ 2.79
MCF2L-226ENST00000486210 CYB5RLQ6IPT4 315 aa32.42■■■□□ 2.78
MCF2L-226ENST00000486210 POLA1P09884 1462 aaPredicted RBP32.42■■■□□ 2.78
MCF2L-226ENST00000486210 ARAP1Q96P48 1450 aa32.37■■■□□ 2.77
MCF2L-226ENST00000486210 RAD54L2Q9Y4B4 1467 aa32.31■■■□□ 2.76
MCF2L-226ENST00000486210 FBLN2P98095 1184 aa32.28■■■□□ 2.76
MCF2L-226ENST00000486210 TDRD9Q8NDG6 1382 aaKnown RBP32.22■■■□□ 2.75
MCF2L-226ENST00000486210 SOGA1O94964 1423 aa32.21■■■□□ 2.75
MCF2L-226ENST00000486210 SNAPC4Q5SXM2 1469 aa32.16■■■□□ 2.74
MCF2L-226ENST00000486210 TRHP20396 242 aaPredicted RBP32.16■■■□□ 2.74
MCF2L-226ENST00000486210 FGD5Q6ZNL6 1462 aa32.15■■■□□ 2.74
MCF2L-226ENST00000486210 CLASP1Q7Z460 1538 aa32.14■■■□□ 2.74
MCF2L-226ENST00000486210 WDR97A6NE52 1622 aa32.13■■■□□ 2.73
MCF2L-226ENST00000486210 CUX1P39880 1505 aa32.07■■■□□ 2.72
MCF2L-226ENST00000486210 MAGI1Q96QZ7 1491 aaPredicted RBP32.03■■■□□ 2.72
MCF2L-226ENST00000486210 SYNJ1O43426 1573 aa32.02■■■□□ 2.72
MCF2L-226ENST00000486210 GRIN2BQ13224 1484 aa31.98■■■□□ 2.71
MCF2L-226ENST00000486210 CHMP7Q8WUX9 453 aaPredicted RBP31.98■■■□□ 2.71
MCF2L-226ENST00000486210 SYNJ2O15056 1496 aa31.94■■■□□ 2.7
MCF2L-226ENST00000486210 PBRM1Q86U86 1689 aa31.92■■■□□ 2.7
MCF2L-226ENST00000486210 GAPVD1Q14C86 1478 aa31.82■■■□□ 2.68
MCF2L-226ENST00000486210 ABCA5Q8WWZ7 1642 aa31.78■■■□□ 2.68
MCF2L-226ENST00000486210 ABCA10Q8WWZ4 1543 aa31.75■■■□□ 2.67
MCF2L-226ENST00000486210 ERCC6L2Q5T890 1561 aa31.64■■■□□ 2.66
MCF2L-226ENST00000486210 GRIN2AQ12879 1464 aa31.59■■■□□ 2.65
MCF2L-226ENST00000486210 ADAMTS12P58397 1594 aa31.56■■■□□ 2.64
MCF2L-226ENST00000486210 CEP170Q5SW79 1584 aa31.56■■■□□ 2.64
MCF2L-226ENST00000486210 NUP160Q12769 1436 aa31.52■■■□□ 2.64
MCF2L-226ENST00000486210 WRNQ14191 1432 aaPredicted RBP eCLIP31.49■■■□□ 2.63
MCF2L-226ENST00000486210 AEBP2Q6ZN18 517 aaPredicted RBP31.48■■■□□ 2.63
MCF2L-226ENST00000486210 BIVM-ERCC5R4GMW8 1640 aa31.48■■■□□ 2.63
MCF2L-226ENST00000486210 SHROOM2Q13796 1616 aa31.46■■■□□ 2.63
MCF2L-226ENST00000486210 TOP2BQ02880 1626 aa31.45■■■□□ 2.62
MCF2L-226ENST00000486210 FHAD1B1AJZ9 1412 aa31.4■■■□□ 2.62
MCF2L-226ENST00000486210 SUPT5HO00267 1087 aaKnown RBP31.39■■■□□ 2.62
MCF2L-226ENST00000486210 ERICH3Q5RHP9 1530 aa31.34■■■□□ 2.61
MCF2L-226ENST00000486210 KIF13AQ9H1H9 1805 aa31.3■■■□□ 2.6
MCF2L-226ENST00000486210 PRG4Q92954 1404 aaPredicted RBP31.22■■■□□ 2.59
MCF2L-226ENST00000486210 JPH4Q96JJ6 628 aa31.14■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms