RNA–Protein interactions for RNA: ENST00000485476.2

LDLRAP1-206, Transcript of low density lipoprotein receptor adaptor protein 1, humanhuman

TSL 5

Gene LDLRAP1, Length 238 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAP1-206ENST00000485476 NISCHQ9Y2I1 1504 aa30.1■■■□□ 2.41
LDLRAP1-206ENST00000485476 ABCC9O60706 1549 aa27.14■■□□□ 1.94
LDLRAP1-206ENST00000485476 CCDC180Q9P1Z9 1646 aa27.05■■□□□ 1.92
LDLRAP1-206ENST00000485476 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
LDLRAP1-206ENST00000485476 NACADO15069 1562 aa25.69■■□□□ 1.7
LDLRAP1-206ENST00000485476 DNAJC5BQ9UF47 199 aa25.65■■□□□ 1.7
LDLRAP1-206ENST00000485476 MYO15BQ96JP2 1530 aa25.39■■□□□ 1.66
LDLRAP1-206ENST00000485476 DCAF8L2P0C7V8 631 aa25.39■■□□□ 1.66
LDLRAP1-206ENST00000485476 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
LDLRAP1-206ENST00000485476 UNC13AQ9UPW8 1703 aa25.06■■□□□ 1.6
LDLRAP1-206ENST00000485476 BICRAQ9NZM4 1560 aa25.04■■□□□ 1.6
LDLRAP1-206ENST00000485476 DCAF1Q9Y4B6 1507 aa24.96■■□□□ 1.59
LDLRAP1-206ENST00000485476 SHROOM4Q9ULL8 1493 aa24.91■■□□□ 1.58
LDLRAP1-206ENST00000485476 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.58
LDLRAP1-206ENST00000485476 CECR2Q9BXF3 1484 aa24.54■■□□□ 1.52
LDLRAP1-206ENST00000485476 CC2D2AQ9P2K1 1620 aa24.52■■□□□ 1.52
LDLRAP1-206ENST00000485476 SCRIBQ14160 1630 aa24.5■■□□□ 1.51
LDLRAP1-206ENST00000485476 EIF4G1Q04637 1599 aaKnown RBP24.46■■□□□ 1.51
LDLRAP1-206ENST00000485476 DNAJC5Q9H3Z4 198 aa23.82■■□□□ 1.4
LDLRAP1-206ENST00000485476 NCAPD3P42695 1498 aa23.75■■□□□ 1.39
LDLRAP1-206ENST00000485476 CUX2O14529 1486 aa23.62■■□□□ 1.37
LDLRAP1-206ENST00000485476 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
LDLRAP1-206ENST00000485476 SMARCA2P51531 1590 aa23.53■■□□□ 1.36
LDLRAP1-206ENST00000485476 ERCC6Q03468 1493 aa23.5■■□□□ 1.35
LDLRAP1-206ENST00000485476 HMGXB3Q12766 1538 aa23.5■■□□□ 1.35
LDLRAP1-206ENST00000485476 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
LDLRAP1-206ENST00000485476 BAZ1AQ9NRL2 1556 aaPredicted RBP23.39■■□□□ 1.33
LDLRAP1-206ENST00000485476 PEG3Q9GZU2 1588 aa23.32■■□□□ 1.32
LDLRAP1-206ENST00000485476 BAZ1BQ9UIG0 1483 aaKnown RBP23.32■■□□□ 1.32
LDLRAP1-206ENST00000485476 NESP48681 1621 aa23.24■■□□□ 1.31
LDLRAP1-206ENST00000485476 LAMC3Q9Y6N6 1575 aa23.18■■□□□ 1.3
LDLRAP1-206ENST00000485476 PDS5BQ9NTI5 1447 aa23.13■■□□□ 1.29
LDLRAP1-206ENST00000485476 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
LDLRAP1-206ENST00000485476 THOC2Q8NI27 1593 aaKnown RBP23.06■■□□□ 1.28
LDLRAP1-206ENST00000485476 CADPSQ9ULU8 1353 aa23.01■■□□□ 1.27
LDLRAP1-206ENST00000485476 KIF21AQ7Z4S6 1674 aa22.87■■□□□ 1.25
LDLRAP1-206ENST00000485476 MRC2Q9UBG0 1479 aa22.85■■□□□ 1.25
LDLRAP1-206ENST00000485476 WDR62O43379 1518 aa22.78■■□□□ 1.24
LDLRAP1-206ENST00000485476 WIZO95785 1651 aa22.75■■□□□ 1.23
LDLRAP1-206ENST00000485476 CEP164Q9UPV0 1460 aa22.72■■□□□ 1.23
LDLRAP1-206ENST00000485476 CFTRP13569 1480 aa22.7■■□□□ 1.22
LDLRAP1-206ENST00000485476 FANCD2Q9BXW9 1451 aa22.67■■□□□ 1.22
LDLRAP1-206ENST00000485476 RSF1Q96T23 1441 aaPredicted RBP22.65■■□□□ 1.22
LDLRAP1-206ENST00000485476 TOP2AP11388 1531 aaKnown RBP22.57■■□□□ 1.2
LDLRAP1-206ENST00000485476 OSCARQ8IYS5 282 aa22.54■■□□□ 1.2
LDLRAP1-206ENST00000485476 TRIM41Q8WV44 630 aa22.53■■□□□ 1.2
LDLRAP1-206ENST00000485476 URB2Q14146 1524 aaKnown RBP22.46■■□□□ 1.19
LDLRAP1-206ENST00000485476 IFT140Q96RY7 1462 aa22.33■■□□□ 1.16
LDLRAP1-206ENST00000485476 CCDC88BA6NC98 1476 aa22.32■■□□□ 1.16
LDLRAP1-206ENST00000485476 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
LDLRAP1-206ENST00000485476 PRDM2Q13029 1718 aa22.27■■□□□ 1.16
LDLRAP1-206ENST00000485476 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
LDLRAP1-206ENST00000485476 ZNF608Q9ULD9 1512 aaPredicted RBP22.18■■□□□ 1.14
LDLRAP1-206ENST00000485476 DNMBPQ6XZF7 1577 aa22.12■■□□□ 1.13
LDLRAP1-206ENST00000485476 RIMBP3CA6NJZ7 1639 aa22.08■■□□□ 1.13
LDLRAP1-206ENST00000485476 RIMBP3BA6NNM3 1639 aa22.08■■□□□ 1.13
LDLRAP1-206ENST00000485476 RIMBP3Q9UFD9 1639 aa22.08■■□□□ 1.13
LDLRAP1-206ENST00000485476 ARHGEF11O15085 1522 aa22.05■■□□□ 1.12
LDLRAP1-206ENST00000485476 EIF4G3O43432 1585 aaKnown RBP22.02■■□□□ 1.12
LDLRAP1-206ENST00000485476 TARBP1Q13395 1621 aaKnown RBP21.99■■□□□ 1.11
LDLRAP1-206ENST00000485476 AQRO60306 1485 aaKnown RBP eCLIP21.99■■□□□ 1.11
LDLRAP1-206ENST00000485476 POLA1P09884 1462 aaPredicted RBP21.97■■□□□ 1.11
LDLRAP1-206ENST00000485476 CYB5RLQ6IPT4 315 aa21.92■■□□□ 1.1
LDLRAP1-206ENST00000485476 SOGA1O94964 1423 aa21.91■■□□□ 1.1
LDLRAP1-206ENST00000485476 WDR97A6NE52 1622 aa21.9■■□□□ 1.1
LDLRAP1-206ENST00000485476 FBLN2P98095 1184 aa21.88■■□□□ 1.09
LDLRAP1-206ENST00000485476 RAD54L2Q9Y4B4 1467 aa21.84■■□□□ 1.09
LDLRAP1-206ENST00000485476 TDRD9Q8NDG6 1382 aaKnown RBP21.84■■□□□ 1.09
LDLRAP1-206ENST00000485476 CHD1O14646 1710 aa21.83■■□□□ 1.08
LDLRAP1-206ENST00000485476 ARAP1Q96P48 1450 aa21.82■■□□□ 1.08
LDLRAP1-206ENST00000485476 MAGI1Q96QZ7 1491 aaPredicted RBP21.79■■□□□ 1.08
LDLRAP1-206ENST00000485476 CHMP7Q8WUX9 453 aaPredicted RBP21.79■■□□□ 1.08
LDLRAP1-206ENST00000485476 FGD5Q6ZNL6 1462 aa21.78■■□□□ 1.08
LDLRAP1-206ENST00000485476 GRIN2BQ13224 1484 aa21.76■■□□□ 1.07
LDLRAP1-206ENST00000485476 SNAPC4Q5SXM2 1469 aa21.76■■□□□ 1.07
LDLRAP1-206ENST00000485476 CUX1P39880 1505 aa21.73■■□□□ 1.07
LDLRAP1-206ENST00000485476 TRHP20396 242 aaPredicted RBP21.72■■□□□ 1.07
LDLRAP1-206ENST00000485476 CLASP1Q7Z460 1538 aa21.71■■□□□ 1.07
LDLRAP1-206ENST00000485476 SYNJ1O43426 1573 aa21.7■■□□□ 1.06
LDLRAP1-206ENST00000485476 SYNJ2O15056 1496 aa21.7■■□□□ 1.06
LDLRAP1-206ENST00000485476 GAPVD1Q14C86 1478 aa21.64■■□□□ 1.05
LDLRAP1-206ENST00000485476 ABCA10Q8WWZ4 1543 aa21.61■■□□□ 1.05
LDLRAP1-206ENST00000485476 WRNQ14191 1432 aaPredicted RBP eCLIP21.52■■□□□ 1.04
LDLRAP1-206ENST00000485476 ABCA5Q8WWZ7 1642 aa21.49■■□□□ 1.03
LDLRAP1-206ENST00000485476 PBRM1Q86U86 1689 aa21.47■■□□□ 1.03
LDLRAP1-206ENST00000485476 GRIN2AQ12879 1464 aa21.43■■□□□ 1.02
LDLRAP1-206ENST00000485476 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
LDLRAP1-206ENST00000485476 NUP160Q12769 1436 aa21.42■■□□□ 1.02
LDLRAP1-206ENST00000485476 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
LDLRAP1-206ENST00000485476 TOP2BQ02880 1626 aa21.37■■□□□ 1.01
LDLRAP1-206ENST00000485476 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
LDLRAP1-206ENST00000485476 ERICH3Q5RHP9 1530 aa21.34■■□□□ 1.01
LDLRAP1-206ENST00000485476 BIVM-ERCC5R4GMW8 1640 aa21.33■■□□□ 1
LDLRAP1-206ENST00000485476 CEP170Q5SW79 1584 aa21.3■■□□□ 1
LDLRAP1-206ENST00000485476 SHROOM2Q13796 1616 aa21.27■■□□□ 1
LDLRAP1-206ENST00000485476 AEBP2Q6ZN18 517 aaPredicted RBP21.26■□□□□ 0.99
LDLRAP1-206ENST00000485476 ERCC6L2Q5T890 1561 aa21.24■□□□□ 0.99
LDLRAP1-206ENST00000485476 JPH4Q96JJ6 628 aa21.23■□□□□ 0.99
LDLRAP1-206ENST00000485476 PRG4Q92954 1404 aaPredicted RBP21.19■□□□□ 0.98
LDLRAP1-206ENST00000485476 NPM1P06748 294 aaKnown RBP eCLIP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 323.9 ms