RNA–Protein interactions for RNA: ENST00000484855.2

CTSA-207, Transcript of cathepsin A, humanhuman

TSL 1 (best)

Gene CTSA, Length 2,183 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-207ENST00000484855 NISCHQ9Y2I1 1504 aa37.49■■■■□ 3.59
CTSA-207ENST00000484855 CCDC180Q9P1Z9 1646 aa32.66■■■□□ 2.82
CTSA-207ENST00000484855 ZCCHC6Q5VYS8 1495 aaKnown RBP31.54■■■□□ 2.64
CTSA-207ENST00000484855 DCAF1Q9Y4B6 1507 aa30.98■■■□□ 2.55
CTSA-207ENST00000484855 DCAF8L2P0C7V8 631 aa30.9■■■□□ 2.54
CTSA-207ENST00000484855 SHROOM4Q9ULL8 1493 aa30.75■■■□□ 2.51
CTSA-207ENST00000484855 ABCC9O60706 1549 aa30.69■■■□□ 2.5
CTSA-207ENST00000484855 MYO15BQ96JP2 1530 aa30.52■■■□□ 2.48
CTSA-207ENST00000484855 NACADO15069 1562 aa30.32■■■□□ 2.44
CTSA-207ENST00000484855 SCRIBQ14160 1630 aa30.09■■■□□ 2.41
CTSA-207ENST00000484855 RB1CC1Q8TDY2 1594 aa30.05■■■□□ 2.4
CTSA-207ENST00000484855 SUPT5HO00267 1087 aaKnown RBP29.65■■■□□ 2.34
CTSA-207ENST00000484855 UNC13AQ9UPW8 1703 aa29.55■■■□□ 2.32
CTSA-207ENST00000484855 BICRAQ9NZM4 1560 aa29.14■■■□□ 2.25
CTSA-207ENST00000484855 RSF1Q96T23 1441 aaPredicted RBP29.14■■■□□ 2.25
CTSA-207ENST00000484855 CECR2Q9BXF3 1484 aa29.12■■■□□ 2.25
CTSA-207ENST00000484855 MROH2BQ7Z745 1585 aa28.99■■■□□ 2.23
CTSA-207ENST00000484855 BAZ1AQ9NRL2 1556 aaPredicted RBP28.95■■■□□ 2.23
CTSA-207ENST00000484855 PABPN1Q86U42 306 aaKnown RBP eCLIP28.95■■■□□ 2.223e-7■□□□□ 10.9
CTSA-207ENST00000484855 SMARCA4P51532 1647 aa28.82■■■□□ 2.2
CTSA-207ENST00000484855 WIZO95785 1651 aa28.81■■■□□ 2.2
CTSA-207ENST00000484855 TOP2AP11388 1531 aaKnown RBP28.48■■■□□ 2.15
CTSA-207ENST00000484855 CHIC1Q5VXU3 224 aa28.45■■■□□ 2.14
CTSA-207ENST00000484855 PEG3Q9GZU2 1588 aa28.43■■■□□ 2.14
CTSA-207ENST00000484855 SMARCA2P51531 1590 aa28.26■■■□□ 2.12
CTSA-207ENST00000484855 EIF4G1Q04637 1599 aaKnown RBP28.25■■■□□ 2.11
CTSA-207ENST00000484855 ATAD2BQ9ULI0 1458 aa28.25■■■□□ 2.11
CTSA-207ENST00000484855 CCDC88BA6NC98 1476 aa28.16■■■□□ 2.1
CTSA-207ENST00000484855 BAZ1BQ9UIG0 1483 aaKnown RBP28.13■■■□□ 2.09
CTSA-207ENST00000484855 HMGXB3Q12766 1538 aa27.98■■■□□ 2.07
CTSA-207ENST00000484855 NCAPD3P42695 1498 aa27.95■■■□□ 2.06
CTSA-207ENST00000484855 TRIM41Q8WV44 630 aa27.84■■■□□ 2.05
CTSA-207ENST00000484855 CC2D2AQ9P2K1 1620 aa27.8■■■□□ 2.04
CTSA-207ENST00000484855 ABCC8Q09428 1581 aa27.69■■■□□ 2.02
CTSA-207ENST00000484855 WRNQ14191 1432 aaPredicted RBP eCLIP27.44■■□□□ 1.98
CTSA-207ENST00000484855 PRDM2Q13029 1718 aa27.42■■□□□ 1.98
CTSA-207ENST00000484855 CFTRP13569 1480 aa27.4■■□□□ 1.98
CTSA-207ENST00000484855 LOC105371045A0A1W2PR82 267 aa27.38■■□□□ 1.97
CTSA-207ENST00000484855 FAM9AQ8IZU1 332 aaPredicted RBP27.38■■□□□ 1.97
CTSA-207ENST00000484855 SYNJ1O43426 1573 aa27.37■■□□□ 1.97
CTSA-207ENST00000484855 CADPSQ9ULU8 1353 aa27.25■■□□□ 1.95
CTSA-207ENST00000484855 TOP2BQ02880 1626 aa27.23■■□□□ 1.95
CTSA-207ENST00000484855 BIVM-ERCC5R4GMW8 1640 aa27.22■■□□□ 1.95
CTSA-207ENST00000484855 SOGA1O94964 1423 aa27.15■■□□□ 1.94
CTSA-207ENST00000484855 EEA1Q15075 1411 aa27.13■■□□□ 1.93
CTSA-207ENST00000484855 CUX1P39880 1505 aa27.1■■□□□ 1.93
CTSA-207ENST00000484855 RUSC2Q8N2Y8 1516 aa27.05■■□□□ 1.92
CTSA-207ENST00000484855 LAMC3Q9Y6N6 1575 aa27.03■■□□□ 1.92
CTSA-207ENST00000484855 EHMT2Q96KQ7 1210 aa27.01■■□□□ 1.91
CTSA-207ENST00000484855 NESP48681 1621 aa27.01■■□□□ 1.91
CTSA-207ENST00000484855 FANCD2Q9BXW9 1451 aa26.99■■□□□ 1.91
CTSA-207ENST00000484855 DNAJC5BQ9UF47 199 aa26.97■■□□□ 1.91
CTSA-207ENST00000484855 CSRNP3Q8WYN3 585 aa26.94■■□□□ 1.9
CTSA-207ENST00000484855 KIF21BO75037 1637 aa26.82■■□□□ 1.88
CTSA-207ENST00000484855 CEP164Q9UPV0 1460 aa26.82■■□□□ 1.88
CTSA-207ENST00000484855 DNMBPQ6XZF7 1577 aa26.81■■□□□ 1.88
CTSA-207ENST00000484855 GOLGA3Q08378 1498 aa26.8■■□□□ 1.88
CTSA-207ENST00000484855 PDS5BQ9NTI5 1447 aa26.78■■□□□ 1.88
CTSA-207ENST00000484855 FGD5Q6ZNL6 1462 aa26.78■■□□□ 1.88
CTSA-207ENST00000484855 KIF21AQ7Z4S6 1674 aa26.76■■□□□ 1.87
CTSA-207ENST00000484855 TOPBP1Q92547 1522 aa26.73■■□□□ 1.87
CTSA-207ENST00000484855 KIF27Q86VH2 1401 aa26.72■■□□□ 1.87
CTSA-207ENST00000484855 TNIKQ9UKE5 1360 aa26.71■■□□□ 1.87
CTSA-207ENST00000484855 URB2Q14146 1524 aaKnown RBP26.65■■□□□ 1.86
CTSA-207ENST00000484855 UBTFP17480 764 aaKnown RBP26.64■■□□□ 1.86
CTSA-207ENST00000484855 CUX2O14529 1486 aa26.63■■□□□ 1.85
CTSA-207ENST00000484855 CEP162Q5TB80 1403 aa26.62■■□□□ 1.85
CTSA-207ENST00000484855 POLA1P09884 1462 aaPredicted RBP26.61■■□□□ 1.85
CTSA-207ENST00000484855 RAPGEF2Q9Y4G8 1499 aa26.61■■□□□ 1.85
CTSA-207ENST00000484855 ERICH3Q5RHP9 1530 aa26.59■■□□□ 1.85
CTSA-207ENST00000484855 PRXQ9BXM0 1461 aa26.58■■□□□ 1.85
CTSA-207ENST00000484855 RAD54L2Q9Y4B4 1467 aa26.53■■□□□ 1.84
CTSA-207ENST00000484855 ABCA10Q8WWZ4 1543 aa26.52■■□□□ 1.84
CTSA-207ENST00000484855 WDR97A6NE52 1622 aa26.5■■□□□ 1.83
CTSA-207ENST00000484855 MRC2Q9UBG0 1479 aa26.45■■□□□ 1.82
CTSA-207ENST00000484855 IGF1RP08069 1367 aa26.43■■□□□ 1.82
CTSA-207ENST00000484855 CLIP1P30622 1438 aa26.36■■□□□ 1.81
CTSA-207ENST00000484855 PCGF6Q9BYE7 350 aa26.34■■□□□ 1.81
CTSA-207ENST00000484855 ABCA5Q8WWZ7 1642 aa26.34■■□□□ 1.81
CTSA-207ENST00000484855 TARBP1Q13395 1621 aaKnown RBP26.33■■□□□ 1.81
CTSA-207ENST00000484855 CARMIL1Q5VZK9 1371 aa26.33■■□□□ 1.8
CTSA-207ENST00000484855 CUL7Q14999 1698 aa26.31■■□□□ 1.8
CTSA-207ENST00000484855 WDR62O43379 1518 aa26.31■■□□□ 1.8
CTSA-207ENST00000484855 ERCC6Q03468 1493 aa26.31■■□□□ 1.8
CTSA-207ENST00000484855 TRIM26Q12899 539 aaPredicted RBP26.27■■□□□ 1.8
CTSA-207ENST00000484855 GAPVD1Q14C86 1478 aa26.23■■□□□ 1.79
CTSA-207ENST00000484855 TDRD9Q8NDG6 1382 aaKnown RBP26.23■■□□□ 1.79
CTSA-207ENST00000484855 THOC2Q8NI27 1593 aaKnown RBP26.22■■□□□ 1.79
CTSA-207ENST00000484855 RANGAP1P46060 587 aaPredicted RBP26.19■■□□□ 1.78
CTSA-207ENST00000484855 PBRM1Q86U86 1689 aa26.17■■□□□ 1.78
CTSA-207ENST00000484855 VPS8Q8N3P4 1428 aa26.16■■□□□ 1.78
CTSA-207ENST00000484855 IFT140Q96RY7 1462 aa26.14■■□□□ 1.78
CTSA-207ENST00000484855 PPARGC1BQ86YN6 1023 aaKnown RBP26.12■■□□□ 1.77
CTSA-207ENST00000484855 CTTNBP2Q8WZ74 1663 aa26.1■■□□□ 1.77
CTSA-207ENST00000484855 ARAP1Q96P48 1450 aa26.1■■□□□ 1.77
CTSA-207ENST00000484855 ARHGAP35Q9NRY4 1499 aa26.05■■□□□ 1.76
CTSA-207ENST00000484855 AQRO60306 1485 aaKnown RBP eCLIP26.04■■□□□ 1.761e-7■■■■■ 32.3
CTSA-207ENST00000484855 ZNF608Q9ULD9 1512 aaPredicted RBP26.01■■□□□ 1.75
CTSA-207ENST00000484855 GRIN2BQ13224 1484 aa25.99■■□□□ 1.75
CTSA-207ENST00000484855 ADAMTS12P58397 1594 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms