RNA–Protein interactions for RNA: ENST00000484733.6

SCFD1-206, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 2,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-206ENST00000484733 NISCHQ9Y2I1 1504 aa28.72■■■□□ 2.19
SCFD1-206ENST00000484733 CCDC180Q9P1Z9 1646 aa25.78■■□□□ 1.72
SCFD1-206ENST00000484733 ABCC9O60706 1549 aa25.59■■□□□ 1.69
SCFD1-206ENST00000484733 RB1CC1Q8TDY2 1594 aa24.47■■□□□ 1.51
SCFD1-206ENST00000484733 NACADO15069 1562 aa24.35■■□□□ 1.49
SCFD1-206ENST00000484733 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
SCFD1-206ENST00000484733 DCAF8L2P0C7V8 631 aa24.07■■□□□ 1.44
SCFD1-206ENST00000484733 DNAJC5BQ9UF47 199 aa23.94■■□□□ 1.42
SCFD1-206ENST00000484733 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
SCFD1-206ENST00000484733 ZCCHC6Q5VYS8 1495 aaKnown RBP23.82■■□□□ 1.4
SCFD1-206ENST00000484733 PABPN1Q86U42 306 aaKnown RBP eCLIP23.82■■□□□ 1.43e-6■■■■□ 24.8
SCFD1-206ENST00000484733 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
SCFD1-206ENST00000484733 BICRAQ9NZM4 1560 aa23.75■■□□□ 1.39
SCFD1-206ENST00000484733 SHROOM4Q9ULL8 1493 aa23.52■■□□□ 1.36
SCFD1-206ENST00000484733 SCRIBQ14160 1630 aa23.39■■□□□ 1.33
SCFD1-206ENST00000484733 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
SCFD1-206ENST00000484733 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.3
SCFD1-206ENST00000484733 CECR2Q9BXF3 1484 aa23.08■■□□□ 1.28
SCFD1-206ENST00000484733 NCAPD3P42695 1498 aa22.48■■□□□ 1.19
SCFD1-206ENST00000484733 ATAD2BQ9ULI0 1458 aa22.39■■□□□ 1.17
SCFD1-206ENST00000484733 SMARCA4P51532 1647 aa22.38■■□□□ 1.17
SCFD1-206ENST00000484733 SMARCA2P51531 1590 aa22.34■■□□□ 1.17
SCFD1-206ENST00000484733 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
SCFD1-206ENST00000484733 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
SCFD1-206ENST00000484733 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
SCFD1-206ENST00000484733 BAZ1BQ9UIG0 1483 aaKnown RBP22.15■■□□□ 1.14
SCFD1-206ENST00000484733 CUX2O14529 1486 aa22.11■■□□□ 1.13
SCFD1-206ENST00000484733 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
SCFD1-206ENST00000484733 ERCC6Q03468 1493 aa22.09■■□□□ 1.13
SCFD1-206ENST00000484733 NESP48681 1621 aa22.01■■□□□ 1.11
SCFD1-206ENST00000484733 DNAJC5Q9H3Z4 198 aa21.98■■□□□ 1.11
SCFD1-206ENST00000484733 LAMC3Q9Y6N6 1575 aa21.95■■□□□ 1.1
SCFD1-206ENST00000484733 WIZO95785 1651 aa21.83■■□□□ 1.08
SCFD1-206ENST00000484733 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
SCFD1-206ENST00000484733 PDS5BQ9NTI5 1447 aa21.8■■□□□ 1.08
SCFD1-206ENST00000484733 CADPSQ9ULU8 1353 aa21.77■■□□□ 1.08
SCFD1-206ENST00000484733 KIF21AQ7Z4S6 1674 aa21.76■■□□□ 1.07
SCFD1-206ENST00000484733 RSF1Q96T23 1441 aaPredicted RBP21.69■■□□□ 1.06
SCFD1-206ENST00000484733 MRC2Q9UBG0 1479 aa21.6■■□□□ 1.05
SCFD1-206ENST00000484733 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
SCFD1-206ENST00000484733 WDR62O43379 1518 aa21.56■■□□□ 1.04
SCFD1-206ENST00000484733 CFTRP13569 1480 aa21.54■■□□□ 1.04
SCFD1-206ENST00000484733 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.03
SCFD1-206ENST00000484733 FANCD2Q9BXW9 1451 aa21.5■■□□□ 1.03
SCFD1-206ENST00000484733 PRDM2Q13029 1718 aa21.35■■□□□ 1.01
SCFD1-206ENST00000484733 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
SCFD1-206ENST00000484733 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
SCFD1-206ENST00000484733 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
SCFD1-206ENST00000484733 IFT140Q96RY7 1462 aa21.11■□□□□ 0.97
SCFD1-206ENST00000484733 TOPBP1Q92547 1522 aa21.11■□□□□ 0.97
SCFD1-206ENST00000484733 OSCARQ8IYS5 282 aa21.07■□□□□ 0.96
SCFD1-206ENST00000484733 DNMBPQ6XZF7 1577 aa21.05■□□□□ 0.96
SCFD1-206ENST00000484733 ZNF608Q9ULD9 1512 aaPredicted RBP21.01■□□□□ 0.95
SCFD1-206ENST00000484733 TRIM41Q8WV44 630 aa20.95■□□□□ 0.94
SCFD1-206ENST00000484733 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
SCFD1-206ENST00000484733 EIF4G3O43432 1585 aaKnown RBP20.92■□□□□ 0.94
SCFD1-206ENST00000484733 POLA1P09884 1462 aaPredicted RBP20.89■□□□□ 0.93
SCFD1-206ENST00000484733 AQRO60306 1485 aaKnown RBP eCLIP20.83■□□□□ 0.932e-9■■■■■ 39.4
SCFD1-206ENST00000484733 SOGA1O94964 1423 aa20.8■□□□□ 0.92
SCFD1-206ENST00000484733 WDR97A6NE52 1622 aa20.79■□□□□ 0.92
SCFD1-206ENST00000484733 RIMBP3CA6NJZ7 1639 aa20.79■□□□□ 0.92
SCFD1-206ENST00000484733 RIMBP3BA6NNM3 1639 aa20.79■□□□□ 0.92
SCFD1-206ENST00000484733 RIMBP3Q9UFD9 1639 aa20.79■□□□□ 0.92
SCFD1-206ENST00000484733 RAD54L2Q9Y4B4 1467 aa20.79■□□□□ 0.92
SCFD1-206ENST00000484733 CUX1P39880 1505 aa20.76■□□□□ 0.91
SCFD1-206ENST00000484733 FGD5Q6ZNL6 1462 aa20.76■□□□□ 0.91
SCFD1-206ENST00000484733 CHD1O14646 1710 aa20.75■□□□□ 0.91
SCFD1-206ENST00000484733 ARHGEF11O15085 1522 aa20.72■□□□□ 0.91
SCFD1-206ENST00000484733 TDRD9Q8NDG6 1382 aaKnown RBP20.71■□□□□ 0.91
SCFD1-206ENST00000484733 SUPT5HO00267 1087 aaKnown RBP20.68■□□□□ 0.9
SCFD1-206ENST00000484733 SNAPC4Q5SXM2 1469 aa20.63■□□□□ 0.89
SCFD1-206ENST00000484733 MAGI1Q96QZ7 1491 aaPredicted RBP20.63■□□□□ 0.89
SCFD1-206ENST00000484733 GRIN2BQ13224 1484 aa20.63■□□□□ 0.89
SCFD1-206ENST00000484733 FBLN2P98095 1184 aa20.62■□□□□ 0.89
SCFD1-206ENST00000484733 ABCA10Q8WWZ4 1543 aa20.57■□□□□ 0.88
SCFD1-206ENST00000484733 CLASP1Q7Z460 1538 aa20.55■□□□□ 0.88
SCFD1-206ENST00000484733 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
SCFD1-206ENST00000484733 SYNJ2O15056 1496 aa20.54■□□□□ 0.88
SCFD1-206ENST00000484733 CHMP7Q8WUX9 453 aaPredicted RBP20.54■□□□□ 0.88
SCFD1-206ENST00000484733 PBRM1Q86U86 1689 aa20.54■□□□□ 0.88
SCFD1-206ENST00000484733 SYNJ1O43426 1573 aa20.54■□□□□ 0.88
SCFD1-206ENST00000484733 ARAP1Q96P48 1450 aa20.53■□□□□ 0.88
SCFD1-206ENST00000484733 ABCA5Q8WWZ7 1642 aa20.52■□□□□ 0.88
SCFD1-206ENST00000484733 CYB5RLQ6IPT4 315 aa20.52■□□□□ 0.88
SCFD1-206ENST00000484733 BIVM-ERCC5R4GMW8 1640 aa20.49■□□□□ 0.87
SCFD1-206ENST00000484733 WRNQ14191 1432 aaPredicted RBP eCLIP20.48■□□□□ 0.87
SCFD1-206ENST00000484733 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
SCFD1-206ENST00000484733 GRIN2AQ12879 1464 aa20.35■□□□□ 0.85
SCFD1-206ENST00000484733 ADAMTS12P58397 1594 aa20.35■□□□□ 0.85
SCFD1-206ENST00000484733 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
SCFD1-206ENST00000484733 FHAD1B1AJZ9 1412 aa20.31■□□□□ 0.84
SCFD1-206ENST00000484733 NUP160Q12769 1436 aa20.3■□□□□ 0.84
SCFD1-206ENST00000484733 CEP170Q5SW79 1584 aa20.27■□□□□ 0.83
SCFD1-206ENST00000484733 TRHP20396 242 aaPredicted RBP20.25■□□□□ 0.83
SCFD1-206ENST00000484733 SHROOM2Q13796 1616 aa20.21■□□□□ 0.83
SCFD1-206ENST00000484733 ERCC6L2Q5T890 1561 aa20.18■□□□□ 0.82
SCFD1-206ENST00000484733 JPH4Q96JJ6 628 aa20.07■□□□□ 0.8
SCFD1-206ENST00000484733 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
SCFD1-206ENST00000484733 IGF1RP08069 1367 aa20.06■□□□□ 0.8
SCFD1-206ENST00000484733 PRG4Q92954 1404 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms