RNA–Protein interactions for RNA: ENST00000483417.1

HMG20B-210, Transcript of high mobility group 20B, humanhuman

TSL 3

Gene HMG20B, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20B-210ENST00000483417 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
HMG20B-210ENST00000483417 CCDC180Q9P1Z9 1646 aa21.02■□□□□ 0.96
HMG20B-210ENST00000483417 ABCC9O60706 1549 aa20.87■□□□□ 0.93
HMG20B-210ENST00000483417 RB1CC1Q8TDY2 1594 aa19.92■□□□□ 0.78
HMG20B-210ENST00000483417 NACADO15069 1562 aa19.87■□□□□ 0.77
HMG20B-210ENST00000483417 DCAF8L2P0C7V8 631 aa19.79■□□□□ 0.76
HMG20B-210ENST00000483417 MYO15BQ96JP2 1530 aa19.69■□□□□ 0.74
HMG20B-210ENST00000483417 ZCCHC6Q5VYS8 1495 aaKnown RBP19.56■□□□□ 0.72
HMG20B-210ENST00000483417 DNAJC5BQ9UF47 199 aa19.54■□□□□ 0.72
HMG20B-210ENST00000483417 PABPN1Q86U42 306 aaKnown RBP eCLIP19.5■□□□□ 0.711e-8■■■□□ 17.2
HMG20B-210ENST00000483417 DCAF1Q9Y4B6 1507 aa19.5■□□□□ 0.71
HMG20B-210ENST00000483417 UNC13AQ9UPW8 1703 aa19.47■□□□□ 0.71
HMG20B-210ENST00000483417 BICRAQ9NZM4 1560 aa19.4■□□□□ 0.7
HMG20B-210ENST00000483417 SCRIBQ14160 1630 aa19.14■□□□□ 0.66
HMG20B-210ENST00000483417 SHROOM4Q9ULL8 1493 aa19.11■□□□□ 0.65
HMG20B-210ENST00000483417 EIF4G1Q04637 1599 aaKnown RBP18.87■□□□□ 0.61
HMG20B-210ENST00000483417 CC2D2AQ9P2K1 1620 aa18.86■□□□□ 0.61
HMG20B-210ENST00000483417 CECR2Q9BXF3 1484 aa18.78■□□□□ 0.6
HMG20B-210ENST00000483417 NCAPD3P42695 1498 aa18.39■□□□□ 0.53
HMG20B-210ENST00000483417 ATAD2BQ9ULI0 1458 aa18.33■□□□□ 0.53
HMG20B-210ENST00000483417 SMARCA4P51532 1647 aa18.31■□□□□ 0.52
HMG20B-210ENST00000483417 BAZ1AQ9NRL2 1556 aaPredicted RBP18.25■□□□□ 0.51
HMG20B-210ENST00000483417 SMARCA2P51531 1590 aa18.24■□□□□ 0.51
HMG20B-210ENST00000483417 HMGXB3Q12766 1538 aa18.2■□□□□ 0.5
HMG20B-210ENST00000483417 MROH2BQ7Z745 1585 aa18.17■□□□□ 0.5
HMG20B-210ENST00000483417 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
HMG20B-210ENST00000483417 BAZ1BQ9UIG0 1483 aaKnown RBP18.11■□□□□ 0.49
HMG20B-210ENST00000483417 NESP48681 1621 aa18■□□□□ 0.47
HMG20B-210ENST00000483417 ERCC6Q03468 1493 aa17.95■□□□□ 0.46
HMG20B-210ENST00000483417 WIZO95785 1651 aa17.93■□□□□ 0.46
HMG20B-210ENST00000483417 CUX2O14529 1486 aa17.9■□□□□ 0.46
HMG20B-210ENST00000483417 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.45
HMG20B-210ENST00000483417 LAMC3Q9Y6N6 1575 aa17.88■□□□□ 0.45
HMG20B-210ENST00000483417 CADPSQ9ULU8 1353 aa17.82■□□□□ 0.44
HMG20B-210ENST00000483417 DNAJC5Q9H3Z4 198 aa17.78■□□□□ 0.44
HMG20B-210ENST00000483417 PDS5BQ9NTI5 1447 aa17.78■□□□□ 0.44
HMG20B-210ENST00000483417 THOC2Q8NI27 1593 aaKnown RBP17.74■□□□□ 0.43
HMG20B-210ENST00000483417 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.43
HMG20B-210ENST00000483417 TOP2AP11388 1531 aaKnown RBP17.71■□□□□ 0.43
HMG20B-210ENST00000483417 CFTRP13569 1480 aa17.65■□□□□ 0.42
HMG20B-210ENST00000483417 MRC2Q9UBG0 1479 aa17.6■□□□□ 0.41
HMG20B-210ENST00000483417 FANCD2Q9BXW9 1451 aa17.57■□□□□ 0.4
HMG20B-210ENST00000483417 WDR62O43379 1518 aa17.56■□□□□ 0.4
HMG20B-210ENST00000483417 CCDC88BA6NC98 1476 aa17.56■□□□□ 0.4
HMG20B-210ENST00000483417 CEP164Q9UPV0 1460 aa17.56■□□□□ 0.4
HMG20B-210ENST00000483417 URB2Q14146 1524 aaKnown RBP17.44■□□□□ 0.38
HMG20B-210ENST00000483417 PRDM2Q13029 1718 aa17.38■□□□□ 0.37
HMG20B-210ENST00000483417 SUPT5HO00267 1087 aaKnown RBP17.36■□□□□ 0.37
HMG20B-210ENST00000483417 TOPBP1Q92547 1522 aa17.27■□□□□ 0.36
HMG20B-210ENST00000483417 ABCC8Q09428 1581 aa17.25■□□□□ 0.35
HMG20B-210ENST00000483417 IFT140Q96RY7 1462 aa17.22■□□□□ 0.35
HMG20B-210ENST00000483417 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
HMG20B-210ENST00000483417 ZNF608Q9ULD9 1512 aaPredicted RBP17.2■□□□□ 0.34
HMG20B-210ENST00000483417 OSCARQ8IYS5 282 aa17.17■□□□□ 0.34
HMG20B-210ENST00000483417 TARBP1Q13395 1621 aaKnown RBP17.11■□□□□ 0.33
HMG20B-210ENST00000483417 POLA1P09884 1462 aaPredicted RBP17.11■□□□□ 0.33
HMG20B-210ENST00000483417 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.326e-11■■■■■ 32.2
HMG20B-210ENST00000483417 RAD54L2Q9Y4B4 1467 aa17.05■□□□□ 0.32
HMG20B-210ENST00000483417 SOGA1O94964 1423 aa17.05■□□□□ 0.32
HMG20B-210ENST00000483417 EIF4G3O43432 1585 aaKnown RBP17.05■□□□□ 0.32
HMG20B-210ENST00000483417 CUX1P39880 1505 aa17.05■□□□□ 0.32
HMG20B-210ENST00000483417 FGD5Q6ZNL6 1462 aa17.02■□□□□ 0.32
HMG20B-210ENST00000483417 TDRD9Q8NDG6 1382 aaKnown RBP17■□□□□ 0.31
HMG20B-210ENST00000483417 TRIM41Q8WV44 630 aa16.98■□□□□ 0.31
HMG20B-210ENST00000483417 WDR97A6NE52 1622 aa16.92■□□□□ 0.3
HMG20B-210ENST00000483417 CHD1O14646 1710 aa16.88■□□□□ 0.29
HMG20B-210ENST00000483417 FBLN2P98095 1184 aa16.88■□□□□ 0.29
HMG20B-210ENST00000483417 RIMBP3CA6NJZ7 1639 aa16.86■□□□□ 0.29
HMG20B-210ENST00000483417 RIMBP3BA6NNM3 1639 aa16.86■□□□□ 0.29
HMG20B-210ENST00000483417 RIMBP3Q9UFD9 1639 aa16.86■□□□□ 0.29
HMG20B-210ENST00000483417 GRIN2BQ13224 1484 aa16.86■□□□□ 0.29
HMG20B-210ENST00000483417 SNAPC4Q5SXM2 1469 aa16.86■□□□□ 0.29
HMG20B-210ENST00000483417 ABCA10Q8WWZ4 1543 aa16.85■□□□□ 0.29
HMG20B-210ENST00000483417 ARHGEF11O15085 1522 aa16.84■□□□□ 0.29
HMG20B-210ENST00000483417 GAPVD1Q14C86 1478 aa16.83■□□□□ 0.28
HMG20B-210ENST00000483417 MAGI1Q96QZ7 1491 aaPredicted RBP16.83■□□□□ 0.28
HMG20B-210ENST00000483417 WRNQ14191 1432 aaPredicted RBP eCLIP16.82■□□□□ 0.28
HMG20B-210ENST00000483417 CHMP7Q8WUX9 453 aaPredicted RBP16.81■□□□□ 0.28
HMG20B-210ENST00000483417 TOP2BQ02880 1626 aa16.81■□□□□ 0.28
HMG20B-210ENST00000483417 BIVM-ERCC5R4GMW8 1640 aa16.8■□□□□ 0.28
HMG20B-210ENST00000483417 SYNJ1O43426 1573 aa16.79■□□□□ 0.28
HMG20B-210ENST00000483417 ABCA5Q8WWZ7 1642 aa16.78■□□□□ 0.28
HMG20B-210ENST00000483417 SYNJ2O15056 1496 aa16.78■□□□□ 0.28
HMG20B-210ENST00000483417 CYB5RLQ6IPT4 315 aa16.75■□□□□ 0.27
HMG20B-210ENST00000483417 CLASP1Q7Z460 1538 aa16.75■□□□□ 0.27
HMG20B-210ENST00000483417 PBRM1Q86U86 1689 aa16.74■□□□□ 0.27
HMG20B-210ENST00000483417 ARAP1Q96P48 1450 aa16.7■□□□□ 0.26
HMG20B-210ENST00000483417 GRIN2AQ12879 1464 aa16.64■□□□□ 0.25
HMG20B-210ENST00000483417 ERICH3Q5RHP9 1530 aa16.63■□□□□ 0.25
HMG20B-210ENST00000483417 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
HMG20B-210ENST00000483417 ADAMTS12P58397 1594 aa16.62■□□□□ 0.25
HMG20B-210ENST00000483417 NUP160Q12769 1436 aa16.61■□□□□ 0.25
HMG20B-210ENST00000483417 CEP170Q5SW79 1584 aa16.57■□□□□ 0.24
HMG20B-210ENST00000483417 IGF1RP08069 1367 aa16.53■□□□□ 0.24
HMG20B-210ENST00000483417 ERCC6L2Q5T890 1561 aa16.51■□□□□ 0.23
HMG20B-210ENST00000483417 KIF27Q86VH2 1401 aa16.49■□□□□ 0.23
HMG20B-210ENST00000483417 SHROOM2Q13796 1616 aa16.48■□□□□ 0.23
HMG20B-210ENST00000483417 JPH4Q96JJ6 628 aa16.47■□□□□ 0.23
HMG20B-210ENST00000483417 TRHP20396 242 aaPredicted RBP16.45■□□□□ 0.22
HMG20B-210ENST00000483417 PRG4Q92954 1404 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms