RNA–Protein interactions for RNA: ENST00000481849.5

HLA-B-253, Transcript of major histocompatibility complex, class I, B, humanhuman

Gene HLA-B, Length 753 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-B-253ENST00000481849 AEBP2Q6ZN18 517 aaPredicted RBP29.74■■■□□ 2.35
HLA-B-253ENST00000481849 CHIC1Q5VXU3 224 aa28.32■■■□□ 2.12
HLA-B-253ENST00000481849 SENP3Q9H4L4 574 aaPredicted RBP25.45■■□□□ 1.66
HLA-B-253ENST00000481849 PHF23Q9BUL5 403 aaPredicted RBP25.09■■□□□ 1.61
HLA-B-253ENST00000481849 FOXD1Q16676 465 aa23.72■■□□□ 1.39
HLA-B-253ENST00000481849 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
HLA-B-253ENST00000481849 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
HLA-B-253ENST00000481849 MSH5O43196 834 aa22.31■■□□□ 1.16
HLA-B-253ENST00000481849 PIAS4Q8N2W9 510 aaPredicted RBP22.15■■□□□ 1.14
HLA-B-253ENST00000481849 PPP6R1Q9UPN7 881 aa22.15■■□□□ 1.14
HLA-B-253ENST00000481849 ADRA2BP18089 450 aa22.13■■□□□ 1.13
HLA-B-253ENST00000481849 POTEDQ86YR6 584 aa22.05■■□□□ 1.12
HLA-B-253ENST00000481849 DNAJC5BQ9UF47 199 aa20.69■□□□□ 0.9
HLA-B-253ENST00000481849 DNAJC5Q9H3Z4 198 aa20.35■□□□□ 0.85
HLA-B-253ENST00000481849 SCAF1Q9H7N4 1312 aaKnown RBP20.33■□□□□ 0.85
HLA-B-253ENST00000481849 MAPK8IP2Q13387 824 aaPredicted RBP20.3■□□□□ 0.84
HLA-B-253ENST00000481849 ABCC9O60706 1549 aa20.27■□□□□ 0.84
HLA-B-253ENST00000481849 DMRT2Q9Y5R5 561 aa20.14■□□□□ 0.81
HLA-B-253ENST00000481849 CCDC180Q9P1Z9 1646 aa19.92■□□□□ 0.78
HLA-B-253ENST00000481849 PPP4R3CPQ6ZMV5 832 aa19.92■□□□□ 0.78
HLA-B-253ENST00000481849 CNKSR2Q8WXI2 1034 aa19.53■□□□□ 0.72
HLA-B-253ENST00000481849 DCAF8L1A6NGE4 600 aa19.43■□□□□ 0.7
HLA-B-253ENST00000481849 HOXD11P31277 338 aaPredicted RBP19.4■□□□□ 0.7
HLA-B-253ENST00000481849 RNF216Q9NWF9 866 aaPredicted RBP19.31■□□□□ 0.68
HLA-B-253ENST00000481849 CACNB1Q02641 598 aaPredicted RBP19.26■□□□□ 0.67
HLA-B-253ENST00000481849 NCBP3Q53F19 620 aaKnown RBP19.24■□□□□ 0.67
HLA-B-253ENST00000481849 RB1CC1Q8TDY2 1594 aa19.02■□□□□ 0.63
HLA-B-253ENST00000481849 DCAF8L2P0C7V8 631 aa19.01■□□□□ 0.63
HLA-B-253ENST00000481849 RNF39Q9H2S5 420 aa19■□□□□ 0.63
HLA-B-253ENST00000481849 NPM3O75607 178 aaKnown RBP18.88■□□□□ 0.61
HLA-B-253ENST00000481849 NACADO15069 1562 aa18.87■□□□□ 0.61
HLA-B-253ENST00000481849 PABPN1Q86U42 306 aaKnown RBP eCLIP18.75■□□□□ 0.59
HLA-B-253ENST00000481849 C1QBPQ07021 282 aaKnown RBP18.73■□□□□ 0.59
HLA-B-253ENST00000481849 TRIM41Q8WV44 630 aa18.63■□□□□ 0.57
HLA-B-253ENST00000481849 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.6■□□□□ 0.57
HLA-B-253ENST00000481849 KCNA4P22459 653 aa18.59■□□□□ 0.57
HLA-B-253ENST00000481849 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.56
HLA-B-253ENST00000481849 ZCCHC6Q5VYS8 1495 aaKnown RBP18.5■□□□□ 0.55
HLA-B-253ENST00000481849 UNC13AQ9UPW8 1703 aa18.49■□□□□ 0.55
HLA-B-253ENST00000481849 CECR2Q9BXF3 1484 aa18.47■□□□□ 0.55
HLA-B-253ENST00000481849 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
HLA-B-253ENST00000481849 DCAF1Q9Y4B6 1507 aa18.37■□□□□ 0.53
HLA-B-253ENST00000481849 SCRIBQ14160 1630 aa18.28■□□□□ 0.52
HLA-B-253ENST00000481849 CUX2O14529 1486 aa18.26■□□□□ 0.51
HLA-B-253ENST00000481849 CC2D2AQ9P2K1 1620 aa18.25■□□□□ 0.51
HLA-B-253ENST00000481849 SHROOM4Q9ULL8 1493 aa18.15■□□□□ 0.5
HLA-B-253ENST00000481849 U3KPZ7 1027 aaPredicted RBP18.13■□□□□ 0.49
HLA-B-253ENST00000481849 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
HLA-B-253ENST00000481849 SLC4A2P04920 1241 aa17.98■□□□□ 0.47
HLA-B-253ENST00000481849 CAPN15O75808 1086 aa17.9■□□□□ 0.46
HLA-B-253ENST00000481849 SPINK5Q9NQ38 1064 aaPredicted RBP17.86■□□□□ 0.45
HLA-B-253ENST00000481849 ILDR1Q86SU0 546 aaPredicted RBP17.77■□□□□ 0.44
HLA-B-253ENST00000481849 APLP2Q06481 763 aa17.74■□□□□ 0.43
HLA-B-253ENST00000481849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.72■□□□□ 0.43
HLA-B-253ENST00000481849 DSG3P32926 999 aa17.72■□□□□ 0.43
HLA-B-253ENST00000481849 HNRNPUL2Q1KMD3 747 aaKnown RBP17.72■□□□□ 0.43
HLA-B-253ENST00000481849 TRHP20396 242 aaPredicted RBP17.63■□□□□ 0.41
HLA-B-253ENST00000481849 SLC4A1APQ9BWU0 796 aaKnown RBP17.62■□□□□ 0.41
HLA-B-253ENST00000481849 ERCC6Q03468 1493 aa17.62■□□□□ 0.41
HLA-B-253ENST00000481849 SAMD1Q6SPF0 538 aaPredicted RBP17.6■□□□□ 0.41
HLA-B-253ENST00000481849 ZNF219Q9P2Y4 722 aaPredicted RBP17.56■□□□□ 0.4
HLA-B-253ENST00000481849 MYCNP04198 464 aaPredicted RBP17.48■□□□□ 0.39
HLA-B-253ENST00000481849 ABCB7O75027 752 aa17.46■□□□□ 0.39
HLA-B-253ENST00000481849 NCAPD3P42695 1498 aa17.45■□□□□ 0.38
HLA-B-253ENST00000481849 ATAD2BQ9ULI0 1458 aa17.44■□□□□ 0.38
HLA-B-253ENST00000481849 SMARCA4P51532 1647 aa17.39■□□□□ 0.37
HLA-B-253ENST00000481849 SMARCA2P51531 1590 aa17.35■□□□□ 0.37
HLA-B-253ENST00000481849 FOXD4L1Q9NU39 408 aa17.34■□□□□ 0.37
HLA-B-253ENST00000481849 BAZ1AQ9NRL2 1556 aaPredicted RBP17.31■□□□□ 0.36
HLA-B-253ENST00000481849 HMGXB3Q12766 1538 aa17.3■□□□□ 0.36
HLA-B-253ENST00000481849 BAZ1BQ9UIG0 1483 aaKnown RBP17.28■□□□□ 0.36
HLA-B-253ENST00000481849 POTEHQ6S545 545 aa17.26■□□□□ 0.35
HLA-B-253ENST00000481849 NESP48681 1621 aa17.24■□□□□ 0.35
HLA-B-253ENST00000481849 MROH2BQ7Z745 1585 aa17.23■□□□□ 0.35
HLA-B-253ENST00000481849 PEG3Q9GZU2 1588 aa17.17■□□□□ 0.34
HLA-B-253ENST00000481849 THOC2Q8NI27 1593 aaKnown RBP17.16■□□□□ 0.34
HLA-B-253ENST00000481849 POLA2Q14181 598 aa17.16■□□□□ 0.34
HLA-B-253ENST00000481849 RIMBP3CA6NJZ7 1639 aa17.13■□□□□ 0.33
HLA-B-253ENST00000481849 RIMBP3BA6NNM3 1639 aa17.13■□□□□ 0.33
HLA-B-253ENST00000481849 RIMBP3Q9UFD9 1639 aa17.13■□□□□ 0.33
HLA-B-253ENST00000481849 ZBTB22O15209 634 aa17.04■□□□□ 0.32
HLA-B-253ENST00000481849 OSCARQ8IYS5 282 aa17.03■□□□□ 0.32
HLA-B-253ENST00000481849 ATF5Q9Y2D1 282 aaPredicted RBP17.03■□□□□ 0.32
HLA-B-253ENST00000481849 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.32
HLA-B-253ENST00000481849 WIZO95785 1651 aa17■□□□□ 0.31
HLA-B-253ENST00000481849 PDS5BQ9NTI5 1447 aa16.99■□□□□ 0.31
HLA-B-253ENST00000481849 CADPSQ9ULU8 1353 aa16.97■□□□□ 0.31
HLA-B-253ENST00000481849 RBM42Q9BTD8 480 aaKnown RBP16.96■□□□□ 0.31
HLA-B-253ENST00000481849 KIF21AQ7Z4S6 1674 aa16.92■□□□□ 0.3
HLA-B-253ENST00000481849 RSF1Q96T23 1441 aaPredicted RBP16.89■□□□□ 0.29
HLA-B-253ENST00000481849 ARHGEF11O15085 1522 aa16.86■□□□□ 0.29
HLA-B-253ENST00000481849 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
HLA-B-253ENST00000481849 ZBTB12Q9Y330 459 aaPredicted RBP16.81■□□□□ 0.28
HLA-B-253ENST00000481849 ATXN8OSP0DMR3 200 aa16.8■□□□□ 0.28
HLA-B-253ENST00000481849 CEP164Q9UPV0 1460 aa16.79■□□□□ 0.28
HLA-B-253ENST00000481849 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
HLA-B-253ENST00000481849 CYB5RLQ6IPT4 315 aa16.77■□□□□ 0.28
HLA-B-253ENST00000481849 FANCD2Q9BXW9 1451 aa16.77■□□□□ 0.28
HLA-B-253ENST00000481849 WDR62O43379 1518 aa16.76■□□□□ 0.27
HLA-B-253ENST00000481849 CFTRP13569 1480 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms