RNA–Protein interactions for RNA: ENST00000481812.4

VPS16-207, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 943 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-207ENST00000481812 NISCHQ9Y2I1 1504 aa49.2■■■■■ 5.47
VPS16-207ENST00000481812 CCDC180Q9P1Z9 1646 aa43.51■■■■■ 4.56
VPS16-207ENST00000481812 ABCC9O60706 1549 aa41.78■■■■■ 4.28
VPS16-207ENST00000481812 ZCCHC6Q5VYS8 1495 aaKnown RBP41.13■■■■■ 4.17
VPS16-207ENST00000481812 DCAF1Q9Y4B6 1507 aa40.83■■■■■ 4.13
VPS16-207ENST00000481812 MYO15BQ96JP2 1530 aa40.77■■■■■ 4.12
VPS16-207ENST00000481812 NACADO15069 1562 aa40.74■■■■■ 4.11
VPS16-207ENST00000481812 DCAF8L2P0C7V8 631 aa40.69■■■■■ 4.1
VPS16-207ENST00000481812 RB1CC1Q8TDY2 1594 aa40.59■■■■■ 4.09
VPS16-207ENST00000481812 UNC13AQ9UPW8 1703 aa39.68■■■■□ 3.94
VPS16-207ENST00000481812 SCRIBQ14160 1630 aa39.62■■■■□ 3.93
VPS16-207ENST00000481812 BICRAQ9NZM4 1560 aa39.32■■■■□ 3.88
VPS16-207ENST00000481812 PABPN1Q86U42 306 aaKnown RBP eCLIP39.11■■■■□ 3.85
VPS16-207ENST00000481812 SHROOM4Q9ULL8 1493 aa39.1■■■■□ 3.85
VPS16-207ENST00000481812 EIF4G1Q04637 1599 aaKnown RBP38.21■■■■□ 3.71
VPS16-207ENST00000481812 CECR2Q9BXF3 1484 aa38.19■■■■□ 3.7
VPS16-207ENST00000481812 BAZ1AQ9NRL2 1556 aaPredicted RBP38.1■■■■□ 3.69
VPS16-207ENST00000481812 SMARCA4P51532 1647 aa38.03■■■■□ 3.68
VPS16-207ENST00000481812 MROH2BQ7Z745 1585 aa37.89■■■■□ 3.66
VPS16-207ENST00000481812 CC2D2AQ9P2K1 1620 aa37.88■■■■□ 3.65
VPS16-207ENST00000481812 DNAJC5BQ9UF47 199 aa37.73■■■■□ 3.63
VPS16-207ENST00000481812 PEG3Q9GZU2 1588 aa37.72■■■■□ 3.63
VPS16-207ENST00000481812 RSF1Q96T23 1441 aaPredicted RBP37.71■■■■□ 3.63
VPS16-207ENST00000481812 SMARCA2P51531 1590 aa37.68■■■■□ 3.62
VPS16-207ENST00000481812 ATAD2BQ9ULI0 1458 aa37.64■■■■□ 3.62
VPS16-207ENST00000481812 NCAPD3P42695 1498 aa37.57■■■■□ 3.6
VPS16-207ENST00000481812 WIZO95785 1651 aa37.51■■■■□ 3.6
VPS16-207ENST00000481812 HMGXB3Q12766 1538 aa37.45■■■■□ 3.59
VPS16-207ENST00000481812 BAZ1BQ9UIG0 1483 aaKnown RBP37.36■■■■□ 3.57
VPS16-207ENST00000481812 TOP2AP11388 1531 aaKnown RBP37.19■■■■□ 3.54
VPS16-207ENST00000481812 SUPT5HO00267 1087 aaKnown RBP37.16■■■■□ 3.54
VPS16-207ENST00000481812 CCDC88BA6NC98 1476 aa36.73■■■■□ 3.47
VPS16-207ENST00000481812 CADPSQ9ULU8 1353 aa36.48■■■■□ 3.43
VPS16-207ENST00000481812 LAMC3Q9Y6N6 1575 aa36.48■■■■□ 3.43
VPS16-207ENST00000481812 CFTRP13569 1480 aa36.42■■■■□ 3.42
VPS16-207ENST00000481812 NESP48681 1621 aa36.35■■■■□ 3.41
VPS16-207ENST00000481812 PRDM2Q13029 1718 aa36.25■■■■□ 3.39
VPS16-207ENST00000481812 PDS5BQ9NTI5 1447 aa36.18■■■■□ 3.38
VPS16-207ENST00000481812 FANCD2Q9BXW9 1451 aa36.03■■■■□ 3.36
VPS16-207ENST00000481812 KIF21AQ7Z4S6 1674 aa36■■■■□ 3.35
VPS16-207ENST00000481812 ERCC6Q03468 1493 aa35.98■■■■□ 3.35
VPS16-207ENST00000481812 CEP164Q9UPV0 1460 aa35.93■■■■□ 3.34
VPS16-207ENST00000481812 MRC2Q9UBG0 1479 aa35.74■■■■□ 3.31
VPS16-207ENST00000481812 THOC2Q8NI27 1593 aaKnown RBP35.72■■■■□ 3.31
VPS16-207ENST00000481812 ABCC8Q09428 1581 aa35.65■■■■□ 3.3
VPS16-207ENST00000481812 WDR62O43379 1518 aa35.62■■■■□ 3.29
VPS16-207ENST00000481812 URB2Q14146 1524 aaKnown RBP35.62■■■■□ 3.29
VPS16-207ENST00000481812 DNMBPQ6XZF7 1577 aa35.58■■■■□ 3.29
VPS16-207ENST00000481812 TOPBP1Q92547 1522 aa35.54■■■■□ 3.28
VPS16-207ENST00000481812 WRNQ14191 1432 aaPredicted RBP eCLIP35.54■■■■□ 3.28
VPS16-207ENST00000481812 CUX1P39880 1505 aa35.51■■■■□ 3.27
VPS16-207ENST00000481812 CUX2O14529 1486 aa35.44■■■■□ 3.26
VPS16-207ENST00000481812 BIVM-ERCC5R4GMW8 1640 aa35.43■■■■□ 3.26
VPS16-207ENST00000481812 TOP2BQ02880 1626 aa35.43■■■■□ 3.26
VPS16-207ENST00000481812 SYNJ1O43426 1573 aa35.39■■■■□ 3.26
VPS16-207ENST00000481812 POLA1P09884 1462 aaPredicted RBP35.28■■■■□ 3.24
VPS16-207ENST00000481812 FGD5Q6ZNL6 1462 aa35.28■■■■□ 3.24
VPS16-207ENST00000481812 IFT140Q96RY7 1462 aa35.17■■■■□ 3.22
VPS16-207ENST00000481812 SOGA1O94964 1423 aa35.15■■■■□ 3.22
VPS16-207ENST00000481812 CHIC1Q5VXU3 224 aa35.15■■■■□ 3.22
VPS16-207ENST00000481812 TARBP1Q13395 1621 aaKnown RBP35.13■■■■□ 3.21
VPS16-207ENST00000481812 TRIM41Q8WV44 630 aa35.12■■■■□ 3.21
VPS16-207ENST00000481812 RAD54L2Q9Y4B4 1467 aa35.08■■■■□ 3.21
VPS16-207ENST00000481812 ABCA10Q8WWZ4 1543 aa35.02■■■■□ 3.2
VPS16-207ENST00000481812 WDR97A6NE52 1622 aa35.01■■■■□ 3.19
VPS16-207ENST00000481812 ZNF608Q9ULD9 1512 aaPredicted RBP34.89■■■■□ 3.18
VPS16-207ENST00000481812 TDRD9Q8NDG6 1382 aaKnown RBP34.82■■■■□ 3.16
VPS16-207ENST00000481812 EIF4G3O43432 1585 aaKnown RBP34.82■■■■□ 3.16
VPS16-207ENST00000481812 ABCA5Q8WWZ7 1642 aa34.81■■■■□ 3.16
VPS16-207ENST00000481812 AQRO60306 1485 aaKnown RBP eCLIP34.78■■■■□ 3.16
VPS16-207ENST00000481812 KIF27Q86VH2 1401 aa34.76■■■■□ 3.16
VPS16-207ENST00000481812 GAPVD1Q14C86 1478 aa34.76■■■■□ 3.15
VPS16-207ENST00000481812 GRIN2BQ13224 1484 aa34.68■■■■□ 3.14
VPS16-207ENST00000481812 PBRM1Q86U86 1689 aa34.66■■■■□ 3.14
VPS16-207ENST00000481812 ERICH3Q5RHP9 1530 aa34.63■■■■□ 3.13
VPS16-207ENST00000481812 EEA1Q15075 1411 aa34.59■■■■□ 3.13
VPS16-207ENST00000481812 RUSC2Q8N2Y8 1516 aa34.58■■■■□ 3.13
VPS16-207ENST00000481812 MAGI1Q96QZ7 1491 aaPredicted RBP34.53■■■■□ 3.12
VPS16-207ENST00000481812 IGF1RP08069 1367 aa34.53■■■■□ 3.12
VPS16-207ENST00000481812 SNAPC4Q5SXM2 1469 aa34.48■■■■□ 3.11
VPS16-207ENST00000481812 CUL7Q14999 1698 aa34.44■■■■□ 3.1
VPS16-207ENST00000481812 ADAMTS12P58397 1594 aa34.4■■■■□ 3.1
VPS16-207ENST00000481812 FHAD1B1AJZ9 1412 aa34.4■■■■□ 3.1
VPS16-207ENST00000481812 CSRNP3Q8WYN3 585 aa34.39■■■■□ 3.1
VPS16-207ENST00000481812 SYNJ2O15056 1496 aa34.37■■■■□ 3.09
VPS16-207ENST00000481812 CARMIL1Q5VZK9 1371 aa34.34■■■■□ 3.09
VPS16-207ENST00000481812 FAM9AQ8IZU1 332 aaPredicted RBP34.28■■■■□ 3.08
VPS16-207ENST00000481812 PRXQ9BXM0 1461 aa34.27■■■■□ 3.08
VPS16-207ENST00000481812 CHD1O14646 1710 aa34.27■■■■□ 3.08
VPS16-207ENST00000481812 CHMP7Q8WUX9 453 aaPredicted RBP34.26■■■■□ 3.08
VPS16-207ENST00000481812 GRIN2AQ12879 1464 aa34.22■■■■□ 3.07
VPS16-207ENST00000481812 RAPGEF2Q9Y4G8 1499 aa34.21■■■■□ 3.07
VPS16-207ENST00000481812 FBLN2P98095 1184 aa34.19■■■■□ 3.06
VPS16-207ENST00000481812 KIF21BO75037 1637 aa34.15■■■■□ 3.06
VPS16-207ENST00000481812 NUP160Q12769 1436 aa34.06■■■■□ 3.04
VPS16-207ENST00000481812 OSCARQ8IYS5 282 aa34.06■■■■□ 3.04
VPS16-207ENST00000481812 CEP170Q5SW79 1584 aa34.01■■■■□ 3.03
VPS16-207ENST00000481812 GOLGA3Q08378 1498 aa33.97■■■■□ 3.03
VPS16-207ENST00000481812 CLASP1Q7Z460 1538 aa33.93■■■■□ 3.02
VPS16-207ENST00000481812 KIAA0586Q9BVV6 1533 aa33.91■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms