RNA–Protein interactions for RNA: ENST00000481644.1

HSPG2-210, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 839 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-210ENST00000481644 NISCHQ9Y2I1 1504 aa45.85■■■■■ 4.93
HSPG2-210ENST00000481644 CCDC180Q9P1Z9 1646 aa40.9■■■■■ 4.14
HSPG2-210ENST00000481644 ABCC9O60706 1549 aa40.2■■■■■ 4.03
HSPG2-210ENST00000481644 RB1CC1Q8TDY2 1594 aa38.59■■■■□ 3.77
HSPG2-210ENST00000481644 NACADO15069 1562 aa38.48■■■■□ 3.75
HSPG2-210ENST00000481644 DCAF8L2P0C7V8 631 aa38.4■■■■□ 3.74
HSPG2-210ENST00000481644 ZCCHC6Q5VYS8 1495 aaKnown RBP38.15■■■■□ 3.7
HSPG2-210ENST00000481644 MYO15BQ96JP2 1530 aa38.15■■■■□ 3.7
HSPG2-210ENST00000481644 DCAF1Q9Y4B6 1507 aa37.92■■■■□ 3.66
HSPG2-210ENST00000481644 UNC13AQ9UPW8 1703 aa37.75■■■■□ 3.63
HSPG2-210ENST00000481644 PABPN1Q86U42 306 aaKnown RBP eCLIP37.5■■■■□ 3.595e-7■■□□□ 12.6
HSPG2-210ENST00000481644 BICRAQ9NZM4 1560 aa37.41■■■■□ 3.58
HSPG2-210ENST00000481644 SCRIBQ14160 1630 aa37.31■■■■□ 3.56
HSPG2-210ENST00000481644 DNAJC5BQ9UF47 199 aa37.03■■■■□ 3.52
HSPG2-210ENST00000481644 SHROOM4Q9ULL8 1493 aa36.99■■■■□ 3.51
HSPG2-210ENST00000481644 EIF4G1Q04637 1599 aaKnown RBP36.45■■■■□ 3.43
HSPG2-210ENST00000481644 CC2D2AQ9P2K1 1620 aa36.37■■■■□ 3.41
HSPG2-210ENST00000481644 CECR2Q9BXF3 1484 aa36.13■■■■□ 3.37
HSPG2-210ENST00000481644 SMARCA4P51532 1647 aa35.65■■■■□ 3.3
HSPG2-210ENST00000481644 BAZ1AQ9NRL2 1556 aaPredicted RBP35.57■■■■□ 3.28
HSPG2-210ENST00000481644 NCAPD3P42695 1498 aa35.48■■■■□ 3.27
HSPG2-210ENST00000481644 ATAD2BQ9ULI0 1458 aa35.48■■■■□ 3.27
HSPG2-210ENST00000481644 SMARCA2P51531 1590 aa35.45■■■■□ 3.27
HSPG2-210ENST00000481644 MROH2BQ7Z745 1585 aa35.34■■■■□ 3.25
HSPG2-210ENST00000481644 HMGXB3Q12766 1538 aa35.32■■■■□ 3.24
HSPG2-210ENST00000481644 PEG3Q9GZU2 1588 aa35.28■■■■□ 3.24
HSPG2-210ENST00000481644 BAZ1BQ9UIG0 1483 aaKnown RBP35.2■■■■□ 3.23
HSPG2-210ENST00000481644 WIZO95785 1651 aa34.98■■■■□ 3.19
HSPG2-210ENST00000481644 RSF1Q96T23 1441 aaPredicted RBP34.83■■■■□ 3.17
HSPG2-210ENST00000481644 NESP48681 1621 aa34.72■■■■□ 3.15
HSPG2-210ENST00000481644 ERCC6Q03468 1493 aa34.68■■■■□ 3.14
HSPG2-210ENST00000481644 LAMC3Q9Y6N6 1575 aa34.62■■■■□ 3.13
HSPG2-210ENST00000481644 TOP2AP11388 1531 aaKnown RBP34.58■■■■□ 3.13
HSPG2-210ENST00000481644 CADPSQ9ULU8 1353 aa34.43■■■■□ 3.1
HSPG2-210ENST00000481644 CUX2O14529 1486 aa34.37■■■■□ 3.09
HSPG2-210ENST00000481644 PDS5BQ9NTI5 1447 aa34.37■■■■□ 3.09
HSPG2-210ENST00000481644 KIF21AQ7Z4S6 1674 aa34.35■■■■□ 3.09
HSPG2-210ENST00000481644 THOC2Q8NI27 1593 aaKnown RBP34.26■■■■□ 3.07
HSPG2-210ENST00000481644 CFTRP13569 1480 aa34.19■■■■□ 3.06
HSPG2-210ENST00000481644 CCDC88BA6NC98 1476 aa34.15■■■■□ 3.06
HSPG2-210ENST00000481644 FANCD2Q9BXW9 1451 aa34.07■■■■□ 3.04
HSPG2-210ENST00000481644 CEP164Q9UPV0 1460 aa34.06■■■■□ 3.04
HSPG2-210ENST00000481644 MRC2Q9UBG0 1479 aa34.04■■■■□ 3.04
HSPG2-210ENST00000481644 PRDM2Q13029 1718 aa34.01■■■■□ 3.03
HSPG2-210ENST00000481644 WDR62O43379 1518 aa33.94■■■■□ 3.02
HSPG2-210ENST00000481644 SUPT5HO00267 1087 aaKnown RBP33.82■■■■□ 3
HSPG2-210ENST00000481644 URB2Q14146 1524 aaKnown RBP33.74■■■□□ 2.99
HSPG2-210ENST00000481644 DNAJC5Q9H3Z4 198 aa33.52■■■□□ 2.96
HSPG2-210ENST00000481644 TOPBP1Q92547 1522 aa33.5■■■□□ 2.95
HSPG2-210ENST00000481644 ABCC8Q09428 1581 aa33.48■■■□□ 2.95
HSPG2-210ENST00000481644 DNMBPQ6XZF7 1577 aa33.46■■■□□ 2.95
HSPG2-210ENST00000481644 IFT140Q96RY7 1462 aa33.33■■■□□ 2.93
HSPG2-210ENST00000481644 ZNF608Q9ULD9 1512 aaPredicted RBP33.2■■■□□ 2.91
HSPG2-210ENST00000481644 POLA1P09884 1462 aaPredicted RBP33.19■■■□□ 2.9
HSPG2-210ENST00000481644 CUX1P39880 1505 aa33.18■■■□□ 2.9
HSPG2-210ENST00000481644 TARBP1Q13395 1621 aaKnown RBP33.16■■■□□ 2.9
HSPG2-210ENST00000481644 EIF4G3O43432 1585 aaKnown RBP33.1■■■□□ 2.89
HSPG2-210ENST00000481644 FGD5Q6ZNL6 1462 aa33.1■■■□□ 2.89
HSPG2-210ENST00000481644 RAD54L2Q9Y4B4 1467 aa33.05■■■□□ 2.88
HSPG2-210ENST00000481644 SOGA1O94964 1423 aa33.05■■■□□ 2.88
HSPG2-210ENST00000481644 AQRO60306 1485 aaKnown RBP eCLIP32.98■■■□□ 2.87
HSPG2-210ENST00000481644 WDR97A6NE52 1622 aa32.89■■■□□ 2.86
HSPG2-210ENST00000481644 TDRD9Q8NDG6 1382 aaKnown RBP32.89■■■□□ 2.86
HSPG2-210ENST00000481644 OSCARQ8IYS5 282 aa32.88■■■□□ 2.85
HSPG2-210ENST00000481644 WRNQ14191 1432 aaPredicted RBP eCLIP32.87■■■□□ 2.85
HSPG2-210ENST00000481644 BIVM-ERCC5R4GMW8 1640 aa32.85■■■□□ 2.85
HSPG2-210ENST00000481644 TOP2BQ02880 1626 aa32.84■■■□□ 2.85
HSPG2-210ENST00000481644 SYNJ1O43426 1573 aa32.83■■■□□ 2.85
HSPG2-210ENST00000481644 ABCA10Q8WWZ4 1543 aa32.76■■■□□ 2.83
HSPG2-210ENST00000481644 CHD1O14646 1710 aa32.74■■■□□ 2.83
HSPG2-210ENST00000481644 GRIN2BQ13224 1484 aa32.7■■■□□ 2.83
HSPG2-210ENST00000481644 SNAPC4Q5SXM2 1469 aa32.69■■■□□ 2.82
HSPG2-210ENST00000481644 PBRM1Q86U86 1689 aa32.68■■■□□ 2.82
HSPG2-210ENST00000481644 GAPVD1Q14C86 1478 aa32.67■■■□□ 2.82
HSPG2-210ENST00000481644 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
HSPG2-210ENST00000481644 FBLN2P98095 1184 aa32.65■■■□□ 2.82
HSPG2-210ENST00000481644 MAGI1Q96QZ7 1491 aaPredicted RBP32.63■■■□□ 2.81
HSPG2-210ENST00000481644 SYNJ2O15056 1496 aa32.51■■■□□ 2.79
HSPG2-210ENST00000481644 CHMP7Q8WUX9 453 aaPredicted RBP32.5■■■□□ 2.79
HSPG2-210ENST00000481644 RIMBP3CA6NJZ7 1639 aa32.43■■■□□ 2.78
HSPG2-210ENST00000481644 RIMBP3BA6NNM3 1639 aa32.43■■■□□ 2.78
HSPG2-210ENST00000481644 RIMBP3Q9UFD9 1639 aa32.43■■■□□ 2.78
HSPG2-210ENST00000481644 ARHGEF11O15085 1522 aa32.39■■■□□ 2.78
HSPG2-210ENST00000481644 ADAMTS12P58397 1594 aa32.37■■■□□ 2.77
HSPG2-210ENST00000481644 ERICH3Q5RHP9 1530 aa32.37■■■□□ 2.77
HSPG2-210ENST00000481644 TRIM41Q8WV44 630 aa32.37■■■□□ 2.77
HSPG2-210ENST00000481644 CLASP1Q7Z460 1538 aa32.34■■■□□ 2.77
HSPG2-210ENST00000481644 FHAD1B1AJZ9 1412 aa32.28■■■□□ 2.76
HSPG2-210ENST00000481644 GRIN2AQ12879 1464 aa32.28■■■□□ 2.76
HSPG2-210ENST00000481644 KIF27Q86VH2 1401 aa32.2■■■□□ 2.75
HSPG2-210ENST00000481644 CEP170Q5SW79 1584 aa32.15■■■□□ 2.74
HSPG2-210ENST00000481644 NUP160Q12769 1436 aa32.13■■■□□ 2.73
HSPG2-210ENST00000481644 ARAP1Q96P48 1450 aa32.1■■■□□ 2.73
HSPG2-210ENST00000481644 IGF1RP08069 1367 aa32.07■■■□□ 2.73
HSPG2-210ENST00000481644 CYB5RLQ6IPT4 315 aa32.07■■■□□ 2.72
HSPG2-210ENST00000481644 CUL7Q14999 1698 aa32.06■■■□□ 2.72
HSPG2-210ENST00000481644 SHROOM2Q13796 1616 aa31.94■■■□□ 2.7
HSPG2-210ENST00000481644 RUSC2Q8N2Y8 1516 aa31.9■■■□□ 2.7
HSPG2-210ENST00000481644 CARMIL1Q5VZK9 1371 aa31.89■■■□□ 2.7
HSPG2-210ENST00000481644 ERCC6L2Q5T890 1561 aa31.88■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms