RNA–Protein interactions for RNA: ENST00000481281.5

HDAC1-207, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-207ENST00000481281 NISCHQ9Y2I1 1504 aa32.12■■■□□ 2.73
HDAC1-207ENST00000481281 CCDC180Q9P1Z9 1646 aa28.69■■■□□ 2.18
HDAC1-207ENST00000481281 ABCC9O60706 1549 aa28.12■■■□□ 2.09
HDAC1-207ENST00000481281 RB1CC1Q8TDY2 1594 aa27.02■■□□□ 1.92
HDAC1-207ENST00000481281 NACADO15069 1562 aa26.97■■□□□ 1.91
HDAC1-207ENST00000481281 MYO15BQ96JP2 1530 aa26.79■■□□□ 1.88
HDAC1-207ENST00000481281 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
HDAC1-207ENST00000481281 DCAF8L2P0C7V8 631 aa26.73■■□□□ 1.87
HDAC1-207ENST00000481281 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
HDAC1-207ENST00000481281 UNC13AQ9UPW8 1703 aa26.47■■□□□ 1.83
HDAC1-207ENST00000481281 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
HDAC1-207ENST00000481281 PABPN1Q86U42 306 aaKnown RBP eCLIP26.19■■□□□ 1.78
HDAC1-207ENST00000481281 SCRIBQ14160 1630 aa26.1■■□□□ 1.77
HDAC1-207ENST00000481281 SHROOM4Q9ULL8 1493 aa25.98■■□□□ 1.75
HDAC1-207ENST00000481281 DNAJC5BQ9UF47 199 aa25.92■■□□□ 1.74
HDAC1-207ENST00000481281 EIF4G1Q04637 1599 aaKnown RBP25.54■■□□□ 1.68
HDAC1-207ENST00000481281 CC2D2AQ9P2K1 1620 aa25.47■■□□□ 1.67
HDAC1-207ENST00000481281 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
HDAC1-207ENST00000481281 SMARCA4P51532 1647 aa24.98■■□□□ 1.59
HDAC1-207ENST00000481281 BAZ1AQ9NRL2 1556 aaPredicted RBP24.92■■□□□ 1.58
HDAC1-207ENST00000481281 NCAPD3P42695 1498 aa24.87■■□□□ 1.57
HDAC1-207ENST00000481281 ATAD2BQ9ULI0 1458 aa24.85■■□□□ 1.57
HDAC1-207ENST00000481281 SMARCA2P51531 1590 aa24.83■■□□□ 1.57
HDAC1-207ENST00000481281 PEG3Q9GZU2 1588 aa24.77■■□□□ 1.56
HDAC1-207ENST00000481281 HMGXB3Q12766 1538 aa24.76■■□□□ 1.55
HDAC1-207ENST00000481281 MROH2BQ7Z745 1585 aa24.75■■□□□ 1.55
HDAC1-207ENST00000481281 BAZ1BQ9UIG0 1483 aaKnown RBP24.64■■□□□ 1.53
HDAC1-207ENST00000481281 WIZO95785 1651 aa24.48■■□□□ 1.51
HDAC1-207ENST00000481281 RSF1Q96T23 1441 aaPredicted RBP24.4■■□□□ 1.5
HDAC1-207ENST00000481281 NESP48681 1621 aa24.3■■□□□ 1.48
HDAC1-207ENST00000481281 LAMC3Q9Y6N6 1575 aa24.25■■□□□ 1.47
HDAC1-207ENST00000481281 ERCC6Q03468 1493 aa24.23■■□□□ 1.47
HDAC1-207ENST00000481281 TOP2AP11388 1531 aaKnown RBP24.23■■□□□ 1.47
HDAC1-207ENST00000481281 CADPSQ9ULU8 1353 aa24.1■■□□□ 1.45
HDAC1-207ENST00000481281 CUX2O14529 1486 aa24.08■■□□□ 1.45
HDAC1-207ENST00000481281 KIF21AQ7Z4S6 1674 aa24.05■■□□□ 1.44
HDAC1-207ENST00000481281 PDS5BQ9NTI5 1447 aa24.04■■□□□ 1.44
HDAC1-207ENST00000481281 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
HDAC1-207ENST00000481281 CFTRP13569 1480 aa23.96■■□□□ 1.43
HDAC1-207ENST00000481281 CCDC88BA6NC98 1476 aa23.9■■□□□ 1.42
HDAC1-207ENST00000481281 FANCD2Q9BXW9 1451 aa23.84■■□□□ 1.41
HDAC1-207ENST00000481281 MRC2Q9UBG0 1479 aa23.84■■□□□ 1.41
HDAC1-207ENST00000481281 PRDM2Q13029 1718 aa23.84■■□□□ 1.41
HDAC1-207ENST00000481281 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
HDAC1-207ENST00000481281 WDR62O43379 1518 aa23.8■■□□□ 1.4
HDAC1-207ENST00000481281 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.37
HDAC1-207ENST00000481281 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
HDAC1-207ENST00000481281 TOPBP1Q92547 1522 aa23.46■■□□□ 1.35
HDAC1-207ENST00000481281 DNAJC5Q9H3Z4 198 aa23.46■■□□□ 1.35
HDAC1-207ENST00000481281 ABCC8Q09428 1581 aa23.44■■□□□ 1.34
HDAC1-207ENST00000481281 DNMBPQ6XZF7 1577 aa23.44■■□□□ 1.34
HDAC1-207ENST00000481281 IFT140Q96RY7 1462 aa23.34■■□□□ 1.33
HDAC1-207ENST00000481281 POLA1P09884 1462 aaPredicted RBP23.25■■□□□ 1.31
HDAC1-207ENST00000481281 TARBP1Q13395 1621 aaKnown RBP23.25■■□□□ 1.31
HDAC1-207ENST00000481281 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
HDAC1-207ENST00000481281 CUX1P39880 1505 aa23.23■■□□□ 1.31
HDAC1-207ENST00000481281 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
HDAC1-207ENST00000481281 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
HDAC1-207ENST00000481281 RAD54L2Q9Y4B4 1467 aa23.12■■□□□ 1.29
HDAC1-207ENST00000481281 SOGA1O94964 1423 aa23.11■■□□□ 1.29
HDAC1-207ENST00000481281 WDR97A6NE52 1622 aa23.07■■□□□ 1.28
HDAC1-207ENST00000481281 AQRO60306 1485 aaKnown RBP eCLIP23.06■■□□□ 1.282e-11■■■□□ 17.7
HDAC1-207ENST00000481281 BIVM-ERCC5R4GMW8 1640 aa23.03■■□□□ 1.28
HDAC1-207ENST00000481281 TOP2BQ02880 1626 aa23.01■■□□□ 1.27
HDAC1-207ENST00000481281 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
HDAC1-207ENST00000481281 TDRD9Q8NDG6 1382 aaKnown RBP23■■□□□ 1.27
HDAC1-207ENST00000481281 SYNJ1O43426 1573 aa22.99■■□□□ 1.27
HDAC1-207ENST00000481281 OSCARQ8IYS5 282 aa22.97■■□□□ 1.27
HDAC1-207ENST00000481281 ABCA10Q8WWZ4 1543 aa22.95■■□□□ 1.26
HDAC1-207ENST00000481281 CHD1O14646 1710 aa22.93■■□□□ 1.26
HDAC1-207ENST00000481281 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
HDAC1-207ENST00000481281 PBRM1Q86U86 1689 aa22.88■■□□□ 1.25
HDAC1-207ENST00000481281 GRIN2BQ13224 1484 aa22.88■■□□□ 1.25
HDAC1-207ENST00000481281 SNAPC4Q5SXM2 1469 aa22.87■■□□□ 1.25
HDAC1-207ENST00000481281 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
HDAC1-207ENST00000481281 MAGI1Q96QZ7 1491 aaPredicted RBP22.86■■□□□ 1.25
HDAC1-207ENST00000481281 SYNJ2O15056 1496 aa22.77■■□□□ 1.24
HDAC1-207ENST00000481281 FBLN2P98095 1184 aa22.74■■□□□ 1.23
HDAC1-207ENST00000481281 RIMBP3CA6NJZ7 1639 aa22.71■■□□□ 1.23
HDAC1-207ENST00000481281 RIMBP3BA6NNM3 1639 aa22.71■■□□□ 1.23
HDAC1-207ENST00000481281 RIMBP3Q9UFD9 1639 aa22.71■■□□□ 1.23
HDAC1-207ENST00000481281 ADAMTS12P58397 1594 aa22.69■■□□□ 1.22
HDAC1-207ENST00000481281 ARHGEF11O15085 1522 aa22.68■■□□□ 1.22
HDAC1-207ENST00000481281 CLASP1Q7Z460 1538 aa22.68■■□□□ 1.22
HDAC1-207ENST00000481281 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
HDAC1-207ENST00000481281 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
HDAC1-207ENST00000481281 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
HDAC1-207ENST00000481281 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
HDAC1-207ENST00000481281 TRIM41Q8WV44 630 aa22.57■■□□□ 1.2
HDAC1-207ENST00000481281 CEP170Q5SW79 1584 aa22.52■■□□□ 1.2
HDAC1-207ENST00000481281 NUP160Q12769 1436 aa22.52■■□□□ 1.2
HDAC1-207ENST00000481281 KIF27Q86VH2 1401 aa22.52■■□□□ 1.2
HDAC1-207ENST00000481281 ARAP1Q96P48 1450 aa22.49■■□□□ 1.19
HDAC1-207ENST00000481281 CUL7Q14999 1698 aa22.46■■□□□ 1.19
HDAC1-207ENST00000481281 IGF1RP08069 1367 aa22.44■■□□□ 1.18
HDAC1-207ENST00000481281 SHROOM2Q13796 1616 aa22.41■■□□□ 1.18
HDAC1-207ENST00000481281 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
HDAC1-207ENST00000481281 RUSC2Q8N2Y8 1516 aa22.36■■□□□ 1.17
HDAC1-207ENST00000481281 ERCC6L2Q5T890 1561 aa22.33■■□□□ 1.16
HDAC1-207ENST00000481281 CARMIL1Q5VZK9 1371 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms