RNA–Protein interactions for RNA: ENST00000481116.5

ABCF3-215, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 4

Gene ABCF3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-215ENST00000481116 NISCHQ9Y2I1 1504 aa31.65■■■□□ 2.66
ABCF3-215ENST00000481116 CCDC180Q9P1Z9 1646 aa28.23■■■□□ 2.11
ABCF3-215ENST00000481116 ABCC9O60706 1549 aa27.85■■■□□ 2.05
ABCF3-215ENST00000481116 RB1CC1Q8TDY2 1594 aa26.65■■□□□ 1.86
ABCF3-215ENST00000481116 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
ABCF3-215ENST00000481116 NACADO15069 1562 aa26.54■■□□□ 1.84
ABCF3-215ENST00000481116 ZCCHC6Q5VYS8 1495 aaKnown RBP26.3■■□□□ 1.8
ABCF3-215ENST00000481116 MYO15BQ96JP2 1530 aa26.25■■□□□ 1.79
ABCF3-215ENST00000481116 UNC13AQ9UPW8 1703 aa26.21■■□□□ 1.79
ABCF3-215ENST00000481116 DCAF1Q9Y4B6 1507 aa26.1■■□□□ 1.77
ABCF3-215ENST00000481116 PABPN1Q86U42 306 aaKnown RBP eCLIP26■■□□□ 1.75
ABCF3-215ENST00000481116 BICRAQ9NZM4 1560 aa25.9■■□□□ 1.74
ABCF3-215ENST00000481116 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
ABCF3-215ENST00000481116 DNAJC5BQ9UF47 199 aa25.76■■□□□ 1.71
ABCF3-215ENST00000481116 SHROOM4Q9ULL8 1493 aa25.44■■□□□ 1.66
ABCF3-215ENST00000481116 EIF4G1Q04637 1599 aaKnown RBP25.21■■□□□ 1.63
ABCF3-215ENST00000481116 CC2D2AQ9P2K1 1620 aa25.19■■□□□ 1.62
ABCF3-215ENST00000481116 CECR2Q9BXF3 1484 aa25■■□□□ 1.59
ABCF3-215ENST00000481116 SMARCA4P51532 1647 aa24.64■■□□□ 1.53
ABCF3-215ENST00000481116 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
ABCF3-215ENST00000481116 ATAD2BQ9ULI0 1458 aa24.5■■□□□ 1.51
ABCF3-215ENST00000481116 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
ABCF3-215ENST00000481116 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
ABCF3-215ENST00000481116 MROH2BQ7Z745 1585 aa24.43■■□□□ 1.5
ABCF3-215ENST00000481116 HMGXB3Q12766 1538 aa24.36■■□□□ 1.49
ABCF3-215ENST00000481116 PEG3Q9GZU2 1588 aa24.33■■□□□ 1.48
ABCF3-215ENST00000481116 BAZ1BQ9UIG0 1483 aaKnown RBP24.3■■□□□ 1.48
ABCF3-215ENST00000481116 WIZO95785 1651 aa24.21■■□□□ 1.47
ABCF3-215ENST00000481116 NESP48681 1621 aa24.07■■□□□ 1.44
ABCF3-215ENST00000481116 RSF1Q96T23 1441 aaPredicted RBP24.04■■□□□ 1.44
ABCF3-215ENST00000481116 ERCC6Q03468 1493 aa23.98■■□□□ 1.43
ABCF3-215ENST00000481116 LAMC3Q9Y6N6 1575 aa23.91■■□□□ 1.42
ABCF3-215ENST00000481116 TOP2AP11388 1531 aaKnown RBP23.85■■□□□ 1.41
ABCF3-215ENST00000481116 KIF21AQ7Z4S6 1674 aa23.83■■□□□ 1.4
ABCF3-215ENST00000481116 CADPSQ9ULU8 1353 aa23.77■■□□□ 1.4
ABCF3-215ENST00000481116 CUX2O14529 1486 aa23.75■■□□□ 1.39
ABCF3-215ENST00000481116 THOC2Q8NI27 1593 aaKnown RBP23.72■■□□□ 1.39
ABCF3-215ENST00000481116 PDS5BQ9NTI5 1447 aa23.7■■□□□ 1.38
ABCF3-215ENST00000481116 CCDC88BA6NC98 1476 aa23.59■■□□□ 1.37
ABCF3-215ENST00000481116 CFTRP13569 1480 aa23.59■■□□□ 1.37
ABCF3-215ENST00000481116 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
ABCF3-215ENST00000481116 PRDM2Q13029 1718 aa23.53■■□□□ 1.36
ABCF3-215ENST00000481116 MRC2Q9UBG0 1479 aa23.51■■□□□ 1.35
ABCF3-215ENST00000481116 CEP164Q9UPV0 1460 aa23.51■■□□□ 1.35
ABCF3-215ENST00000481116 WDR62O43379 1518 aa23.44■■□□□ 1.34
ABCF3-215ENST00000481116 SUPT5HO00267 1087 aaKnown RBP23.35■■□□□ 1.33
ABCF3-215ENST00000481116 URB2Q14146 1524 aaKnown RBP23.33■■□□□ 1.33
ABCF3-215ENST00000481116 DNAJC5Q9H3Z4 198 aa23.27■■□□□ 1.32
ABCF3-215ENST00000481116 TOPBP1Q92547 1522 aa23.14■■□□□ 1.3
ABCF3-215ENST00000481116 DNMBPQ6XZF7 1577 aa23.1■■□□□ 1.29
ABCF3-215ENST00000481116 ABCC8Q09428 1581 aa23.06■■□□□ 1.28
ABCF3-215ENST00000481116 IFT140Q96RY7 1462 aa23■■□□□ 1.27
ABCF3-215ENST00000481116 ZNF608Q9ULD9 1512 aaPredicted RBP22.99■■□□□ 1.27
ABCF3-215ENST00000481116 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
ABCF3-215ENST00000481116 POLA1P09884 1462 aaPredicted RBP22.93■■□□□ 1.26
ABCF3-215ENST00000481116 CUX1P39880 1505 aa22.92■■□□□ 1.26
ABCF3-215ENST00000481116 EIF4G3O43432 1585 aaKnown RBP22.89■■□□□ 1.26
ABCF3-215ENST00000481116 RAD54L2Q9Y4B4 1467 aa22.88■■□□□ 1.25
ABCF3-215ENST00000481116 FGD5Q6ZNL6 1462 aa22.86■■□□□ 1.25
ABCF3-215ENST00000481116 AQRO60306 1485 aaKnown RBP eCLIP22.83■■□□□ 1.255e-8■■■■□ 26.4
ABCF3-215ENST00000481116 SOGA1O94964 1423 aa22.82■■□□□ 1.24
ABCF3-215ENST00000481116 OSCARQ8IYS5 282 aa22.75■■□□□ 1.23
ABCF3-215ENST00000481116 TDRD9Q8NDG6 1382 aaKnown RBP22.75■■□□□ 1.23
ABCF3-215ENST00000481116 WDR97A6NE52 1622 aa22.73■■□□□ 1.23
ABCF3-215ENST00000481116 CHD1O14646 1710 aa22.71■■□□□ 1.23
ABCF3-215ENST00000481116 BIVM-ERCC5R4GMW8 1640 aa22.68■■□□□ 1.22
ABCF3-215ENST00000481116 SYNJ1O43426 1573 aa22.68■■□□□ 1.22
ABCF3-215ENST00000481116 TOP2BQ02880 1626 aa22.66■■□□□ 1.22
ABCF3-215ENST00000481116 WRNQ14191 1432 aaPredicted RBP eCLIP22.65■■□□□ 1.22
ABCF3-215ENST00000481116 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
ABCF3-215ENST00000481116 FBLN2P98095 1184 aa22.6■■□□□ 1.21
ABCF3-215ENST00000481116 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
ABCF3-215ENST00000481116 ABCA10Q8WWZ4 1543 aa22.59■■□□□ 1.21
ABCF3-215ENST00000481116 GRIN2BQ13224 1484 aa22.56■■□□□ 1.2
ABCF3-215ENST00000481116 GAPVD1Q14C86 1478 aa22.56■■□□□ 1.2
ABCF3-215ENST00000481116 ABCA5Q8WWZ7 1642 aa22.56■■□□□ 1.2
ABCF3-215ENST00000481116 MAGI1Q96QZ7 1491 aaPredicted RBP22.51■■□□□ 1.19
ABCF3-215ENST00000481116 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
ABCF3-215ENST00000481116 RIMBP3CA6NJZ7 1639 aa22.49■■□□□ 1.19
ABCF3-215ENST00000481116 RIMBP3BA6NNM3 1639 aa22.49■■□□□ 1.19
ABCF3-215ENST00000481116 RIMBP3Q9UFD9 1639 aa22.49■■□□□ 1.19
ABCF3-215ENST00000481116 CHMP7Q8WUX9 453 aaPredicted RBP22.46■■□□□ 1.19
ABCF3-215ENST00000481116 SYNJ2O15056 1496 aa22.43■■□□□ 1.18
ABCF3-215ENST00000481116 ARHGEF11O15085 1522 aa22.41■■□□□ 1.18
ABCF3-215ENST00000481116 CLASP1Q7Z460 1538 aa22.36■■□□□ 1.17
ABCF3-215ENST00000481116 ADAMTS12P58397 1594 aa22.35■■□□□ 1.17
ABCF3-215ENST00000481116 ERICH3Q5RHP9 1530 aa22.31■■□□□ 1.16
ABCF3-215ENST00000481116 GRIN2AQ12879 1464 aa22.28■■□□□ 1.16
ABCF3-215ENST00000481116 FHAD1B1AJZ9 1412 aa22.26■■□□□ 1.15
ABCF3-215ENST00000481116 CEP170Q5SW79 1584 aa22.24■■□□□ 1.15
ABCF3-215ENST00000481116 ARAP1Q96P48 1450 aa22.23■■□□□ 1.15
ABCF3-215ENST00000481116 CYB5RLQ6IPT4 315 aa22.23■■□□□ 1.15
ABCF3-215ENST00000481116 NUP160Q12769 1436 aa22.17■■□□□ 1.14
ABCF3-215ENST00000481116 KIF27Q86VH2 1401 aa22.17■■□□□ 1.14
ABCF3-215ENST00000481116 IGF1RP08069 1367 aa22.13■■□□□ 1.13
ABCF3-215ENST00000481116 ERCC6L2Q5T890 1561 aa22.12■■□□□ 1.13
ABCF3-215ENST00000481116 CUL7Q14999 1698 aa22.11■■□□□ 1.13
ABCF3-215ENST00000481116 SHROOM2Q13796 1616 aa22.08■■□□□ 1.13
ABCF3-215ENST00000481116 RUSC2Q8N2Y8 1516 aa22.04■■□□□ 1.12
ABCF3-215ENST00000481116 CARMIL1Q5VZK9 1371 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms