RNA–Protein interactions for RNA: ENST00000480923.5

VPS36-204, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 3

Gene VPS36, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-204ENST00000480923 NISCHQ9Y2I1 1504 aa49.18■■■■■ 5.46
VPS36-204ENST00000480923 CCDC180Q9P1Z9 1646 aa43.75■■■■■ 4.59
VPS36-204ENST00000480923 ABCC9O60706 1549 aa43.16■■■■■ 4.5
VPS36-204ENST00000480923 RB1CC1Q8TDY2 1594 aa41.36■■■■■ 4.21
VPS36-204ENST00000480923 DCAF8L2P0C7V8 631 aa41.32■■■■■ 4.21
VPS36-204ENST00000480923 NACADO15069 1562 aa41.24■■■■■ 4.19
VPS36-204ENST00000480923 ZCCHC6Q5VYS8 1495 aaKnown RBP40.91■■■■■ 4.14
VPS36-204ENST00000480923 MYO15BQ96JP2 1530 aa40.88■■■■■ 4.14
VPS36-204ENST00000480923 DCAF1Q9Y4B6 1507 aa40.64■■■■■ 4.1
VPS36-204ENST00000480923 PABPN1Q86U42 306 aaKnown RBP eCLIP40.32■■■■■ 4.05
VPS36-204ENST00000480923 UNC13AQ9UPW8 1703 aa40.31■■■■■ 4.04
VPS36-204ENST00000480923 BICRAQ9NZM4 1560 aa40.07■■■■■ 4.01
VPS36-204ENST00000480923 SCRIBQ14160 1630 aa40■■■■□ 3.99
VPS36-204ENST00000480923 DNAJC5BQ9UF47 199 aa39.8■■■■□ 3.96
VPS36-204ENST00000480923 SHROOM4Q9ULL8 1493 aa39.63■■■■□ 3.94
VPS36-204ENST00000480923 EIF4G1Q04637 1599 aaKnown RBP39.07■■■■□ 3.84
VPS36-204ENST00000480923 CC2D2AQ9P2K1 1620 aa38.96■■■■□ 3.83
VPS36-204ENST00000480923 CECR2Q9BXF3 1484 aa38.79■■■■□ 3.8
VPS36-204ENST00000480923 SMARCA4P51532 1647 aa38.2■■■■□ 3.7
VPS36-204ENST00000480923 BAZ1AQ9NRL2 1556 aaPredicted RBP38.14■■■■□ 3.7
VPS36-204ENST00000480923 ATAD2BQ9ULI0 1458 aa38.08■■■■□ 3.69
VPS36-204ENST00000480923 NCAPD3P42695 1498 aa38.07■■■■□ 3.68
VPS36-204ENST00000480923 SMARCA2P51531 1590 aa38■■■■□ 3.67
VPS36-204ENST00000480923 MROH2BQ7Z745 1585 aa37.91■■■■□ 3.66
VPS36-204ENST00000480923 HMGXB3Q12766 1538 aa37.85■■■■□ 3.65
VPS36-204ENST00000480923 PEG3Q9GZU2 1588 aa37.79■■■■□ 3.64
VPS36-204ENST00000480923 BAZ1BQ9UIG0 1483 aaKnown RBP37.77■■■■□ 3.64
VPS36-204ENST00000480923 WIZO95785 1651 aa37.47■■■■□ 3.59
VPS36-204ENST00000480923 RSF1Q96T23 1441 aaPredicted RBP37.4■■■■□ 3.58
VPS36-204ENST00000480923 NESP48681 1621 aa37.25■■■■□ 3.55
VPS36-204ENST00000480923 ERCC6Q03468 1493 aa37.23■■■■□ 3.55
VPS36-204ENST00000480923 LAMC3Q9Y6N6 1575 aa37.08■■■■□ 3.53
VPS36-204ENST00000480923 TOP2AP11388 1531 aaKnown RBP37.07■■■■□ 3.53
VPS36-204ENST00000480923 CADPSQ9ULU8 1353 aa36.98■■■■□ 3.51
VPS36-204ENST00000480923 PDS5BQ9NTI5 1447 aa36.9■■■■□ 3.5
VPS36-204ENST00000480923 CUX2O14529 1486 aa36.86■■■■□ 3.49
VPS36-204ENST00000480923 KIF21AQ7Z4S6 1674 aa36.74■■■■□ 3.47
VPS36-204ENST00000480923 THOC2Q8NI27 1593 aaKnown RBP36.69■■■■□ 3.46
VPS36-204ENST00000480923 CFTRP13569 1480 aa36.69■■■■□ 3.46
VPS36-204ENST00000480923 CCDC88BA6NC98 1476 aa36.66■■■■□ 3.46
VPS36-204ENST00000480923 FANCD2Q9BXW9 1451 aa36.56■■■■□ 3.44
VPS36-204ENST00000480923 CEP164Q9UPV0 1460 aa36.53■■■■□ 3.44
VPS36-204ENST00000480923 MRC2Q9UBG0 1479 aa36.52■■■■□ 3.44
VPS36-204ENST00000480923 SUPT5HO00267 1087 aaKnown RBP36.39■■■■□ 3.42
VPS36-204ENST00000480923 WDR62O43379 1518 aa36.37■■■■□ 3.41
VPS36-204ENST00000480923 PRDM2Q13029 1718 aa36.28■■■■□ 3.4
VPS36-204ENST00000480923 URB2Q14146 1524 aaKnown RBP36.19■■■■□ 3.38
VPS36-204ENST00000480923 DNAJC5Q9H3Z4 198 aa36.02■■■■□ 3.36
VPS36-204ENST00000480923 TOPBP1Q92547 1522 aa35.93■■■■□ 3.34
VPS36-204ENST00000480923 ABCC8Q09428 1581 aa35.91■■■■□ 3.34
VPS36-204ENST00000480923 DNMBPQ6XZF7 1577 aa35.85■■■■□ 3.33
VPS36-204ENST00000480923 IFT140Q96RY7 1462 aa35.78■■■■□ 3.32
VPS36-204ENST00000480923 ZNF608Q9ULD9 1512 aaPredicted RBP35.63■■■■□ 3.29
VPS36-204ENST00000480923 POLA1P09884 1462 aaPredicted RBP35.61■■■■□ 3.29
VPS36-204ENST00000480923 CUX1P39880 1505 aa35.57■■■■□ 3.29
VPS36-204ENST00000480923 TARBP1Q13395 1621 aaKnown RBP35.51■■■■□ 3.28
VPS36-204ENST00000480923 FGD5Q6ZNL6 1462 aa35.51■■■■□ 3.28
VPS36-204ENST00000480923 SOGA1O94964 1423 aa35.49■■■■□ 3.27
VPS36-204ENST00000480923 RAD54L2Q9Y4B4 1467 aa35.49■■■■□ 3.27
VPS36-204ENST00000480923 EIF4G3O43432 1585 aaKnown RBP35.45■■■■□ 3.27
VPS36-204ENST00000480923 AQRO60306 1485 aaKnown RBP eCLIP35.42■■■■□ 3.26
VPS36-204ENST00000480923 OSCARQ8IYS5 282 aa35.34■■■■□ 3.25
VPS36-204ENST00000480923 TDRD9Q8NDG6 1382 aaKnown RBP35.34■■■■□ 3.25
VPS36-204ENST00000480923 WRNQ14191 1432 aaPredicted RBP eCLIP35.3■■■■□ 3.24
VPS36-204ENST00000480923 WDR97A6NE52 1622 aa35.21■■■■□ 3.23
VPS36-204ENST00000480923 SYNJ1O43426 1573 aa35.19■■■■□ 3.22
VPS36-204ENST00000480923 TOP2BQ02880 1626 aa35.18■■■■□ 3.22
VPS36-204ENST00000480923 BIVM-ERCC5R4GMW8 1640 aa35.17■■■■□ 3.22
VPS36-204ENST00000480923 ABCA10Q8WWZ4 1543 aa35.13■■■■□ 3.21
VPS36-204ENST00000480923 FBLN2P98095 1184 aa35.11■■■■□ 3.21
VPS36-204ENST00000480923 GRIN2BQ13224 1484 aa35.09■■■■□ 3.21
VPS36-204ENST00000480923 SNAPC4Q5SXM2 1469 aa35.09■■■■□ 3.21
VPS36-204ENST00000480923 GAPVD1Q14C86 1478 aa35.07■■■■□ 3.2
VPS36-204ENST00000480923 CHD1O14646 1710 aa35.01■■■■□ 3.2
VPS36-204ENST00000480923 MAGI1Q96QZ7 1491 aaPredicted RBP35■■■■□ 3.19
VPS36-204ENST00000480923 ABCA5Q8WWZ7 1642 aa34.99■■■■□ 3.19
VPS36-204ENST00000480923 CHMP7Q8WUX9 453 aaPredicted RBP34.95■■■■□ 3.19
VPS36-204ENST00000480923 PBRM1Q86U86 1689 aa34.94■■■■□ 3.18
VPS36-204ENST00000480923 SYNJ2O15056 1496 aa34.88■■■■□ 3.17
VPS36-204ENST00000480923 TRIM41Q8WV44 630 aa34.82■■■■□ 3.16
VPS36-204ENST00000480923 RIMBP3CA6NJZ7 1639 aa34.73■■■■□ 3.15
VPS36-204ENST00000480923 RIMBP3BA6NNM3 1639 aa34.73■■■■□ 3.15
VPS36-204ENST00000480923 RIMBP3Q9UFD9 1639 aa34.73■■■■□ 3.15
VPS36-204ENST00000480923 ARHGEF11O15085 1522 aa34.73■■■■□ 3.15
VPS36-204ENST00000480923 ERICH3Q5RHP9 1530 aa34.7■■■■□ 3.14
VPS36-204ENST00000480923 ADAMTS12P58397 1594 aa34.69■■■■□ 3.14
VPS36-204ENST00000480923 CLASP1Q7Z460 1538 aa34.66■■■■□ 3.14
VPS36-204ENST00000480923 FHAD1B1AJZ9 1412 aa34.66■■■■□ 3.14
VPS36-204ENST00000480923 GRIN2AQ12879 1464 aa34.63■■■■□ 3.13
VPS36-204ENST00000480923 KIF27Q86VH2 1401 aa34.58■■■■□ 3.13
VPS36-204ENST00000480923 CYB5RLQ6IPT4 315 aa34.49■■■■□ 3.11
VPS36-204ENST00000480923 NUP160Q12769 1436 aa34.47■■■■□ 3.11
VPS36-204ENST00000480923 IGF1RP08069 1367 aa34.46■■■■□ 3.11
VPS36-204ENST00000480923 CEP170Q5SW79 1584 aa34.45■■■■□ 3.11
VPS36-204ENST00000480923 ARAP1Q96P48 1450 aa34.44■■■■□ 3.1
VPS36-204ENST00000480923 CUL7Q14999 1698 aa34.33■■■■□ 3.09
VPS36-204ENST00000480923 CARMIL1Q5VZK9 1371 aa34.27■■■■□ 3.08
VPS36-204ENST00000480923 RUSC2Q8N2Y8 1516 aa34.19■■■■□ 3.06
VPS36-204ENST00000480923 ERCC6L2Q5T890 1561 aa34.19■■■■□ 3.06
VPS36-204ENST00000480923 SHROOM2Q13796 1616 aa34.19■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms