RNA–Protein interactions for RNA: ENST00000480340.1

DENND4B-208, Transcript of DENN domain containing 4B, humanhuman

TSL 2

Gene DENND4B, Length 2,530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND4B-208ENST00000480340 NISCHQ9Y2I1 1504 aa31.91■■■□□ 2.7
DENND4B-208ENST00000480340 CCDC180Q9P1Z9 1646 aa27.94■■■□□ 2.06
DENND4B-208ENST00000480340 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
DENND4B-208ENST00000480340 ABCC9O60706 1549 aa26.68■■□□□ 1.86
DENND4B-208ENST00000480340 DCAF8L2P0C7V8 631 aa26.55■■□□□ 1.84
DENND4B-208ENST00000480340 DCAF1Q9Y4B6 1507 aa26.33■■□□□ 1.81
DENND4B-208ENST00000480340 MYO15BQ96JP2 1530 aa26.08■■□□□ 1.77
DENND4B-208ENST00000480340 NACADO15069 1562 aa26.05■■□□□ 1.76
DENND4B-208ENST00000480340 SHROOM4Q9ULL8 1493 aa25.98■■□□□ 1.75
DENND4B-208ENST00000480340 RB1CC1Q8TDY2 1594 aa25.91■■□□□ 1.74
DENND4B-208ENST00000480340 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
DENND4B-208ENST00000480340 UNC13AQ9UPW8 1703 aa25.48■■□□□ 1.67
DENND4B-208ENST00000480340 BICRAQ9NZM4 1560 aa25.14■■□□□ 1.62
DENND4B-208ENST00000480340 PABPN1Q86U42 306 aaKnown RBP eCLIP25.12■■□□□ 1.617e-7■■■■□ 25.6
DENND4B-208ENST00000480340 SUPT5HO00267 1087 aaKnown RBP24.88■■□□□ 1.57
DENND4B-208ENST00000480340 CECR2Q9BXF3 1484 aa24.86■■□□□ 1.57
DENND4B-208ENST00000480340 MROH2BQ7Z745 1585 aa24.68■■□□□ 1.54
DENND4B-208ENST00000480340 RSF1Q96T23 1441 aaPredicted RBP24.67■■□□□ 1.54
DENND4B-208ENST00000480340 BAZ1AQ9NRL2 1556 aaPredicted RBP24.66■■□□□ 1.54
DENND4B-208ENST00000480340 SMARCA4P51532 1647 aa24.61■■□□□ 1.53
DENND4B-208ENST00000480340 WIZO95785 1651 aa24.51■■□□□ 1.51
DENND4B-208ENST00000480340 EIF4G1Q04637 1599 aaKnown RBP24.41■■□□□ 1.5
DENND4B-208ENST00000480340 DNAJC5BQ9UF47 199 aa24.35■■□□□ 1.49
DENND4B-208ENST00000480340 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
DENND4B-208ENST00000480340 ATAD2BQ9ULI0 1458 aa24.23■■□□□ 1.47
DENND4B-208ENST00000480340 SMARCA2P51531 1590 aa24.21■■□□□ 1.47
DENND4B-208ENST00000480340 TOP2AP11388 1531 aaKnown RBP24.18■■□□□ 1.46
DENND4B-208ENST00000480340 CC2D2AQ9P2K1 1620 aa24.13■■□□□ 1.45
DENND4B-208ENST00000480340 BAZ1BQ9UIG0 1483 aaKnown RBP24.1■■□□□ 1.45
DENND4B-208ENST00000480340 NCAPD3P42695 1498 aa24.03■■□□□ 1.44
DENND4B-208ENST00000480340 HMGXB3Q12766 1538 aa23.99■■□□□ 1.43
DENND4B-208ENST00000480340 CCDC88BA6NC98 1476 aa23.94■■□□□ 1.42
DENND4B-208ENST00000480340 CHIC1Q5VXU3 224 aa23.64■■□□□ 1.38
DENND4B-208ENST00000480340 CFTRP13569 1480 aa23.45■■□□□ 1.34
DENND4B-208ENST00000480340 ABCC8Q09428 1581 aa23.42■■□□□ 1.34
DENND4B-208ENST00000480340 CADPSQ9ULU8 1353 aa23.42■■□□□ 1.34
DENND4B-208ENST00000480340 PRDM2Q13029 1718 aa23.4■■□□□ 1.34
DENND4B-208ENST00000480340 TRIM41Q8WV44 630 aa23.36■■□□□ 1.33
DENND4B-208ENST00000480340 NESP48681 1621 aa23.36■■□□□ 1.33
DENND4B-208ENST00000480340 LAMC3Q9Y6N6 1575 aa23.28■■□□□ 1.32
DENND4B-208ENST00000480340 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
DENND4B-208ENST00000480340 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
DENND4B-208ENST00000480340 SYNJ1O43426 1573 aa23.19■■□□□ 1.3
DENND4B-208ENST00000480340 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
DENND4B-208ENST00000480340 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
DENND4B-208ENST00000480340 CUX1P39880 1505 aa23.08■■□□□ 1.29
DENND4B-208ENST00000480340 TOP2BQ02880 1626 aa23.08■■□□□ 1.29
DENND4B-208ENST00000480340 HRCP23327 699 aa23.07■■□□□ 1.28
DENND4B-208ENST00000480340 BIVM-ERCC5R4GMW8 1640 aa23.07■■□□□ 1.28
DENND4B-208ENST00000480340 CEP164Q9UPV0 1460 aa23.06■■□□□ 1.28
DENND4B-208ENST00000480340 FAM9AQ8IZU1 332 aaPredicted RBP23■■□□□ 1.27
DENND4B-208ENST00000480340 DNMBPQ6XZF7 1577 aa22.93■■□□□ 1.26
DENND4B-208ENST00000480340 URB2Q14146 1524 aaKnown RBP22.92■■□□□ 1.26
DENND4B-208ENST00000480340 TOPBP1Q92547 1522 aa22.91■■□□□ 1.26
DENND4B-208ENST00000480340 SOGA1O94964 1423 aa22.91■■□□□ 1.26
DENND4B-208ENST00000480340 ERCC6Q03468 1493 aa22.88■■□□□ 1.25
DENND4B-208ENST00000480340 FGD5Q6ZNL6 1462 aa22.87■■□□□ 1.25
DENND4B-208ENST00000480340 RUSC2Q8N2Y8 1516 aa22.86■■□□□ 1.25
DENND4B-208ENST00000480340 MRC2Q9UBG0 1479 aa22.82■■□□□ 1.24
DENND4B-208ENST00000480340 POLA1P09884 1462 aaPredicted RBP22.78■■□□□ 1.24
DENND4B-208ENST00000480340 LOC105371045A0A1W2PR82 267 aa22.78■■□□□ 1.24
DENND4B-208ENST00000480340 PCGF6Q9BYE7 350 aa22.77■■□□□ 1.24
DENND4B-208ENST00000480340 EEA1Q15075 1411 aa22.74■■□□□ 1.23
DENND4B-208ENST00000480340 EHMT2Q96KQ7 1210 aa22.74■■□□□ 1.23
DENND4B-208ENST00000480340 RAD54L2Q9Y4B4 1467 aa22.74■■□□□ 1.23
DENND4B-208ENST00000480340 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
DENND4B-208ENST00000480340 PPARGC1BQ86YN6 1023 aaKnown RBP22.71■■□□□ 1.23
DENND4B-208ENST00000480340 WDR62O43379 1518 aa22.71■■□□□ 1.23
DENND4B-208ENST00000480340 CSRNP3Q8WYN3 585 aa22.69■■□□□ 1.22
DENND4B-208ENST00000480340 CUX2O14529 1486 aa22.68■■□□□ 1.22
DENND4B-208ENST00000480340 KIF27Q86VH2 1401 aa22.66■■□□□ 1.22
DENND4B-208ENST00000480340 ABCA10Q8WWZ4 1543 aa22.63■■□□□ 1.21
DENND4B-208ENST00000480340 WDR97A6NE52 1622 aa22.62■■□□□ 1.21
DENND4B-208ENST00000480340 TARBP1Q13395 1621 aaKnown RBP22.59■■□□□ 1.21
DENND4B-208ENST00000480340 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
DENND4B-208ENST00000480340 KIF21BO75037 1637 aa22.5■■□□□ 1.19
DENND4B-208ENST00000480340 IFT140Q96RY7 1462 aa22.5■■□□□ 1.19
DENND4B-208ENST00000480340 ABCA5Q8WWZ7 1642 aa22.49■■□□□ 1.19
DENND4B-208ENST00000480340 IGF1RP08069 1367 aa22.48■■□□□ 1.19
DENND4B-208ENST00000480340 GOLGA3Q08378 1498 aa22.46■■□□□ 1.19
DENND4B-208ENST00000480340 GAPVD1Q14C86 1478 aa22.46■■□□□ 1.19
DENND4B-208ENST00000480340 RAPGEF2Q9Y4G8 1499 aa22.44■■□□□ 1.18
DENND4B-208ENST00000480340 ZNF608Q9ULD9 1512 aaPredicted RBP22.44■■□□□ 1.18
DENND4B-208ENST00000480340 PRXQ9BXM0 1461 aa22.44■■□□□ 1.18
DENND4B-208ENST00000480340 UBTFP17480 764 aaKnown RBP22.43■■□□□ 1.18
DENND4B-208ENST00000480340 AQRO60306 1485 aaKnown RBP eCLIP22.43■■□□□ 1.188e-9■■■■■ 62.1
DENND4B-208ENST00000480340 PBRM1Q86U86 1689 aa22.4■■□□□ 1.18
DENND4B-208ENST00000480340 CARMIL1Q5VZK9 1371 aa22.38■■□□□ 1.17
DENND4B-208ENST00000480340 ERICH3Q5RHP9 1530 aa22.38■■□□□ 1.17
DENND4B-208ENST00000480340 EIF4G3O43432 1585 aaKnown RBP22.36■■□□□ 1.17
DENND4B-208ENST00000480340 CUL7Q14999 1698 aa22.35■■□□□ 1.17
DENND4B-208ENST00000480340 TNIKQ9UKE5 1360 aa22.33■■□□□ 1.17
DENND4B-208ENST00000480340 GRIN2BQ13224 1484 aa22.3■■□□□ 1.16
DENND4B-208ENST00000480340 PELP1Q8IZL8 1130 aaKnown RBP22.25■■□□□ 1.15
DENND4B-208ENST00000480340 CEP162Q5TB80 1403 aa22.23■■□□□ 1.15
DENND4B-208ENST00000480340 ADAMTS12P58397 1594 aa22.22■■□□□ 1.15
DENND4B-208ENST00000480340 SNAPC4Q5SXM2 1469 aa22.2■■□□□ 1.15
DENND4B-208ENST00000480340 RANGAP1P46060 587 aaPredicted RBP22.2■■□□□ 1.14
DENND4B-208ENST00000480340 FHAD1B1AJZ9 1412 aa22.18■■□□□ 1.14
DENND4B-208ENST00000480340 MAGI1Q96QZ7 1491 aaPredicted RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms