RNA–Protein interactions for RNA: ENST00000480327.1

VCP-206, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 884 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-206ENST00000480327 NISCHQ9Y2I1 1504 aa22.52■■□□□ 1.19
VCP-206ENST00000480327 ABCC9O60706 1549 aa20.32■□□□□ 0.84
VCP-206ENST00000480327 CCDC180Q9P1Z9 1646 aa20.29■□□□□ 0.84
VCP-206ENST00000480327 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
VCP-206ENST00000480327 DNAJC5BQ9UF47 199 aa19.2■□□□□ 0.66
VCP-206ENST00000480327 NACADO15069 1562 aa19.14■□□□□ 0.65
VCP-206ENST00000480327 UNC13AQ9UPW8 1703 aa19.05■□□□□ 0.64
VCP-206ENST00000480327 DCAF8L2P0C7V8 631 aa18.89■□□□□ 0.61
VCP-206ENST00000480327 PABPN1Q86U42 306 aaKnown RBP eCLIP18.87■□□□□ 0.61
VCP-206ENST00000480327 BICRAQ9NZM4 1560 aa18.85■□□□□ 0.61
VCP-206ENST00000480327 MYO15BQ96JP2 1530 aa18.84■□□□□ 0.61
VCP-206ENST00000480327 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
VCP-206ENST00000480327 DCAF1Q9Y4B6 1507 aa18.59■□□□□ 0.57
VCP-206ENST00000480327 SCRIBQ14160 1630 aa18.46■□□□□ 0.55
VCP-206ENST00000480327 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.54
VCP-206ENST00000480327 CC2D2AQ9P2K1 1620 aa18.41■□□□□ 0.54
VCP-206ENST00000480327 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.52
VCP-206ENST00000480327 CECR2Q9BXF3 1484 aa18.3■□□□□ 0.52
VCP-206ENST00000480327 NCAPD3P42695 1498 aa17.67■□□□□ 0.42
VCP-206ENST00000480327 SMARCA4P51532 1647 aa17.62■□□□□ 0.41
VCP-206ENST00000480327 ATAD2BQ9ULI0 1458 aa17.62■□□□□ 0.41
VCP-206ENST00000480327 DNAJC5Q9H3Z4 198 aa17.61■□□□□ 0.41
VCP-206ENST00000480327 HMGXB3Q12766 1538 aa17.55■□□□□ 0.4
VCP-206ENST00000480327 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
VCP-206ENST00000480327 CUX2O14529 1486 aa17.52■□□□□ 0.4
VCP-206ENST00000480327 NESP48681 1621 aa17.48■□□□□ 0.39
VCP-206ENST00000480327 ERCC6Q03468 1493 aa17.48■□□□□ 0.39
VCP-206ENST00000480327 BAZ1AQ9NRL2 1556 aaPredicted RBP17.45■□□□□ 0.38
VCP-206ENST00000480327 PEG3Q9GZU2 1588 aa17.45■□□□□ 0.38
VCP-206ENST00000480327 BAZ1BQ9UIG0 1483 aaKnown RBP17.4■□□□□ 0.38
VCP-206ENST00000480327 MROH2BQ7Z745 1585 aa17.38■□□□□ 0.37
VCP-206ENST00000480327 THOC2Q8NI27 1593 aaKnown RBP17.36■□□□□ 0.37
VCP-206ENST00000480327 KIF21AQ7Z4S6 1674 aa17.31■□□□□ 0.36
VCP-206ENST00000480327 LAMC3Q9Y6N6 1575 aa17.3■□□□□ 0.36
VCP-206ENST00000480327 WIZO95785 1651 aa17.2■□□□□ 0.34
VCP-206ENST00000480327 PDS5BQ9NTI5 1447 aa17.12■□□□□ 0.33
VCP-206ENST00000480327 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
VCP-206ENST00000480327 WDR62O43379 1518 aa17.05■□□□□ 0.32
VCP-206ENST00000480327 MRC2Q9UBG0 1479 aa17.04■□□□□ 0.32
VCP-206ENST00000480327 RSF1Q96T23 1441 aaPredicted RBP16.95■□□□□ 0.3
VCP-206ENST00000480327 CEP164Q9UPV0 1460 aa16.93■□□□□ 0.3
VCP-206ENST00000480327 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
VCP-206ENST00000480327 CFTRP13569 1480 aa16.92■□□□□ 0.3
VCP-206ENST00000480327 TOP2AP11388 1531 aaKnown RBP16.91■□□□□ 0.3
VCP-206ENST00000480327 PRDM2Q13029 1718 aa16.87■□□□□ 0.29
VCP-206ENST00000480327 URB2Q14146 1524 aaKnown RBP16.85■□□□□ 0.29
VCP-206ENST00000480327 TRIM41Q8WV44 630 aa16.76■□□□□ 0.27
VCP-206ENST00000480327 CCDC88BA6NC98 1476 aa16.72■□□□□ 0.27
VCP-206ENST00000480327 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
VCP-206ENST00000480327 OSCARQ8IYS5 282 aa16.64■□□□□ 0.25
VCP-206ENST00000480327 TOPBP1Q92547 1522 aa16.62■□□□□ 0.25
VCP-206ENST00000480327 IFT140Q96RY7 1462 aa16.6■□□□□ 0.25
VCP-206ENST00000480327 RIMBP3CA6NJZ7 1639 aa16.59■□□□□ 0.25
VCP-206ENST00000480327 RIMBP3BA6NNM3 1639 aa16.59■□□□□ 0.25
VCP-206ENST00000480327 RIMBP3Q9UFD9 1639 aa16.59■□□□□ 0.25
VCP-206ENST00000480327 EIF4G3O43432 1585 aaKnown RBP16.57■□□□□ 0.24
VCP-206ENST00000480327 DNMBPQ6XZF7 1577 aa16.55■□□□□ 0.24
VCP-206ENST00000480327 TARBP1Q13395 1621 aaKnown RBP16.55■□□□□ 0.24
VCP-206ENST00000480327 CHD1O14646 1710 aa16.52■□□□□ 0.24
VCP-206ENST00000480327 ABCC8Q09428 1581 aa16.5■□□□□ 0.23
VCP-206ENST00000480327 ARHGEF11O15085 1522 aa16.48■□□□□ 0.23
VCP-206ENST00000480327 AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.222e-7■■■■■ 32
VCP-206ENST00000480327 POLA1P09884 1462 aaPredicted RBP16.45■□□□□ 0.22
VCP-206ENST00000480327 RAD54L2Q9Y4B4 1467 aa16.39■□□□□ 0.21
VCP-206ENST00000480327 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
VCP-206ENST00000480327 CUX1P39880 1505 aa16.33■□□□□ 0.2
VCP-206ENST00000480327 WDR97A6NE52 1622 aa16.32■□□□□ 0.2
VCP-206ENST00000480327 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
VCP-206ENST00000480327 SOGA1O94964 1423 aa16.31■□□□□ 0.2
VCP-206ENST00000480327 TDRD9Q8NDG6 1382 aaKnown RBP16.31■□□□□ 0.2
VCP-206ENST00000480327 SUPT5HO00267 1087 aaKnown RBP16.29■□□□□ 0.2
VCP-206ENST00000480327 CYB5RLQ6IPT4 315 aa16.28■□□□□ 0.2
VCP-206ENST00000480327 CLASP1Q7Z460 1538 aa16.28■□□□□ 0.2
VCP-206ENST00000480327 SNAPC4Q5SXM2 1469 aa16.28■□□□□ 0.2
VCP-206ENST00000480327 FBLN2P98095 1184 aa16.25■□□□□ 0.19
VCP-206ENST00000480327 PBRM1Q86U86 1689 aa16.24■□□□□ 0.19
VCP-206ENST00000480327 MAGI1Q96QZ7 1491 aaPredicted RBP16.21■□□□□ 0.19
VCP-206ENST00000480327 GRIN2BQ13224 1484 aa16.19■□□□□ 0.18
VCP-206ENST00000480327 SYNJ1O43426 1573 aa16.18■□□□□ 0.18
VCP-206ENST00000480327 ABCA5Q8WWZ7 1642 aa16.18■□□□□ 0.18
VCP-206ENST00000480327 SYNJ2O15056 1496 aa16.16■□□□□ 0.18
VCP-206ENST00000480327 GAPVD1Q14C86 1478 aa16.13■□□□□ 0.17
VCP-206ENST00000480327 CHMP7Q8WUX9 453 aaPredicted RBP16.12■□□□□ 0.17
VCP-206ENST00000480327 ABCA10Q8WWZ4 1543 aa16.12■□□□□ 0.17
VCP-206ENST00000480327 TRHP20396 242 aaPredicted RBP16.08■□□□□ 0.16
VCP-206ENST00000480327 BIVM-ERCC5R4GMW8 1640 aa16.08■□□□□ 0.16
VCP-206ENST00000480327 ERCC6L2Q5T890 1561 aa16.05■□□□□ 0.16
VCP-206ENST00000480327 ADAMTS12P58397 1594 aa16.04■□□□□ 0.16
VCP-206ENST00000480327 TOP2BQ02880 1626 aa16.03■□□□□ 0.16
VCP-206ENST00000480327 CEP170Q5SW79 1584 aa16.02■□□□□ 0.16
VCP-206ENST00000480327 GRIN2AQ12879 1464 aa16.01■□□□□ 0.15
VCP-206ENST00000480327 SHROOM2Q13796 1616 aa15.98■□□□□ 0.15
VCP-206ENST00000480327 NUP160Q12769 1436 aa15.97■□□□□ 0.15
VCP-206ENST00000480327 WRNQ14191 1432 aaPredicted RBP eCLIP15.97■□□□□ 0.15
VCP-206ENST00000480327 ERICH3Q5RHP9 1530 aa15.91■□□□□ 0.14
VCP-206ENST00000480327 FHAD1B1AJZ9 1412 aa15.9■□□□□ 0.14
VCP-206ENST00000480327 KIF13AQ9H1H9 1805 aa15.87■□□□□ 0.13
VCP-206ENST00000480327 RUSC2Q8N2Y8 1516 aa15.83■□□□□ 0.12
VCP-206ENST00000480327 PRG4Q92954 1404 aaPredicted RBP15.78■□□□□ 0.12
VCP-206ENST00000480327 JPH4Q96JJ6 628 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms