RNA–Protein interactions for RNA: ENST00000480022.1

CHD6-208, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 2

Gene CHD6, Length 2,829 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-208ENST00000480022 NISCHQ9Y2I1 1504 aa23.05■■□□□ 1.28
CHD6-208ENST00000480022 CCDC180Q9P1Z9 1646 aa20.27■□□□□ 0.84
CHD6-208ENST00000480022 ABCC9O60706 1549 aa19.6■□□□□ 0.73
CHD6-208ENST00000480022 ZCCHC6Q5VYS8 1495 aaKnown RBP19.28■□□□□ 0.68
CHD6-208ENST00000480022 DCAF8L2P0C7V8 631 aa19.17■□□□□ 0.66
CHD6-208ENST00000480022 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
CHD6-208ENST00000480022 NACADO15069 1562 aa19.02■□□□□ 0.63
CHD6-208ENST00000480022 MYO15BQ96JP2 1530 aa19.01■□□□□ 0.63
CHD6-208ENST00000480022 RB1CC1Q8TDY2 1594 aa18.95■□□□□ 0.62
CHD6-208ENST00000480022 SCRIBQ14160 1630 aa18.59■□□□□ 0.57
CHD6-208ENST00000480022 UNC13AQ9UPW8 1703 aa18.48■□□□□ 0.55
CHD6-208ENST00000480022 SHROOM4Q9ULL8 1493 aa18.48■□□□□ 0.55
CHD6-208ENST00000480022 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.54
CHD6-208ENST00000480022 BICRAQ9NZM4 1560 aa18.39■□□□□ 0.53
CHD6-208ENST00000480022 HRCP23327 699 aa18.37■□□□□ 0.53
CHD6-208ENST00000480022 PELP1Q8IZL8 1130 aaKnown RBP18.36■□□□□ 0.53
CHD6-208ENST00000480022 CECR2Q9BXF3 1484 aa17.95■□□□□ 0.46
CHD6-208ENST00000480022 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
CHD6-208ENST00000480022 PPARGC1BQ86YN6 1023 aaKnown RBP17.87■□□□□ 0.45
CHD6-208ENST00000480022 BAZ1AQ9NRL2 1556 aaPredicted RBP17.83■□□□□ 0.44
CHD6-208ENST00000480022 MYT1Q01538 1121 aa17.8■□□□□ 0.44
CHD6-208ENST00000480022 SMARCA4P51532 1647 aa17.79■□□□□ 0.44
CHD6-208ENST00000480022 MROH2BQ7Z745 1585 aa17.79■□□□□ 0.44
CHD6-208ENST00000480022 PCGF6Q9BYE7 350 aa17.76■□□□□ 0.43
CHD6-208ENST00000480022 RSF1Q96T23 1441 aaPredicted RBP17.72■□□□□ 0.43
CHD6-208ENST00000480022 DNAJC5BQ9UF47 199 aa17.71■□□□□ 0.43
CHD6-208ENST00000480022 CC2D2AQ9P2K1 1620 aa17.71■□□□□ 0.43
CHD6-208ENST00000480022 ATAD2BQ9ULI0 1458 aa17.64■□□□□ 0.41
CHD6-208ENST00000480022 PEG3Q9GZU2 1588 aa17.61■□□□□ 0.41
CHD6-208ENST00000480022 SMARCA2P51531 1590 aa17.6■□□□□ 0.41
CHD6-208ENST00000480022 WIZO95785 1651 aa17.59■□□□□ 0.41
CHD6-208ENST00000480022 NCAPD3P42695 1498 aa17.57■□□□□ 0.4
CHD6-208ENST00000480022 SUPT5HO00267 1087 aaKnown RBP17.55■□□□□ 0.4
CHD6-208ENST00000480022 SCAF1Q9H7N4 1312 aaKnown RBP17.54■□□□□ 0.4
CHD6-208ENST00000480022 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
CHD6-208ENST00000480022 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
CHD6-208ENST00000480022 TOP2AP11388 1531 aaKnown RBP17.42■□□□□ 0.38
CHD6-208ENST00000480022 SLC24A1O60721 1099 aa17.4■□□□□ 0.38
CHD6-208ENST00000480022 CHIC1Q5VXU3 224 aa17.29■□□□□ 0.36
CHD6-208ENST00000480022 TTBK1Q5TCY1 1321 aaPredicted RBP17.25■□□□□ 0.35
CHD6-208ENST00000480022 CCDC88BA6NC98 1476 aa17.25■□□□□ 0.35
CHD6-208ENST00000480022 ZEB1P37275 1124 aaPredicted RBP17.2■□□□□ 0.34
CHD6-208ENST00000480022 TRIM26Q12899 539 aaPredicted RBP17.16■□□□□ 0.34
CHD6-208ENST00000480022 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
CHD6-208ENST00000480022 NESP48681 1621 aa17.07■□□□□ 0.32
CHD6-208ENST00000480022 CFTRP13569 1480 aa17.06■□□□□ 0.32
CHD6-208ENST00000480022 ACIN1Q9UKV3 1341 aaKnown RBP17.04■□□□□ 0.32
CHD6-208ENST00000480022 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.32
CHD6-208ENST00000480022 NEUROD1Q13562 356 aa16.93■□□□□ 0.3
CHD6-208ENST00000480022 PDS5BQ9NTI5 1447 aa16.92■□□□□ 0.3
CHD6-208ENST00000480022 FANCD2Q9BXW9 1451 aa16.89■□□□□ 0.29
CHD6-208ENST00000480022 GTF3C3Q9Y5Q9 886 aa16.89■□□□□ 0.29
CHD6-208ENST00000480022 LOC105371045A0A1W2PR82 267 aa16.87■□□□□ 0.29
CHD6-208ENST00000480022 PRDM2Q13029 1718 aa16.85■□□□□ 0.29
CHD6-208ENST00000480022 ERCC6Q03468 1493 aa16.85■□□□□ 0.29
CHD6-208ENST00000480022 CEP164Q9UPV0 1460 aa16.82■□□□□ 0.28
CHD6-208ENST00000480022 CENPBP07199 599 aaPredicted RBP16.81■□□□□ 0.28
CHD6-208ENST00000480022 KIF21AQ7Z4S6 1674 aa16.81■□□□□ 0.28
CHD6-208ENST00000480022 PRKCSHP14314 528 aaPredicted RBP16.74■□□□□ 0.27
CHD6-208ENST00000480022 MRC2Q9UBG0 1479 aa16.72■□□□□ 0.27
CHD6-208ENST00000480022 ABCC8Q09428 1581 aa16.72■□□□□ 0.27
CHD6-208ENST00000480022 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
CHD6-208ENST00000480022 THOC2Q8NI27 1593 aaKnown RBP16.69■□□□□ 0.26
CHD6-208ENST00000480022 WRNQ14191 1432 aaPredicted RBP eCLIP16.69■□□□□ 0.26
CHD6-208ENST00000480022 CUX1P39880 1505 aa16.66■□□□□ 0.26
CHD6-208ENST00000480022 WDR62O43379 1518 aa16.65■□□□□ 0.26
CHD6-208ENST00000480022 TOPBP1Q92547 1522 aa16.65■□□□□ 0.26
CHD6-208ENST00000480022 DNMBPQ6XZF7 1577 aa16.64■□□□□ 0.25
CHD6-208ENST00000480022 SYNJ1O43426 1573 aa16.62■□□□□ 0.25
CHD6-208ENST00000480022 ERICH6Q7L0X2 663 aa16.6■□□□□ 0.25
CHD6-208ENST00000480022 TOP2BQ02880 1626 aa16.58■□□□□ 0.25
CHD6-208ENST00000480022 APLP2Q06481 763 aa16.58■□□□□ 0.24
CHD6-208ENST00000480022 BIVM-ERCC5R4GMW8 1640 aa16.56■□□□□ 0.24
CHD6-208ENST00000480022 FGD5Q6ZNL6 1462 aa16.55■□□□□ 0.24
CHD6-208ENST00000480022 TRIM41Q8WV44 630 aa16.55■□□□□ 0.24
CHD6-208ENST00000480022 POLA1P09884 1462 aaPredicted RBP16.54■□□□□ 0.24
CHD6-208ENST00000480022 DIEXFQ68CQ4 756 aaKnown RBP16.54■□□□□ 0.24
CHD6-208ENST00000480022 CUX2O14529 1486 aa16.53■□□□□ 0.24
CHD6-208ENST00000480022 SOGA1O94964 1423 aa16.48■□□□□ 0.23
CHD6-208ENST00000480022 RAD54L2Q9Y4B4 1467 aa16.48■□□□□ 0.23
CHD6-208ENST00000480022 BCL11AQ9H165 835 aa16.47■□□□□ 0.23
CHD6-208ENST00000480022 IFT140Q96RY7 1462 aa16.46■□□□□ 0.22
CHD6-208ENST00000480022 TARBP1Q13395 1621 aaKnown RBP16.43■□□□□ 0.22
CHD6-208ENST00000480022 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
CHD6-208ENST00000480022 DAXXQ9UER7 740 aaPredicted RBP16.39■□□□□ 0.21
CHD6-208ENST00000480022 ZNF608Q9ULD9 1512 aaPredicted RBP16.38■□□□□ 0.21
CHD6-208ENST00000480022 TDRD9Q8NDG6 1382 aaKnown RBP16.37■□□□□ 0.21
CHD6-208ENST00000480022 WDR97A6NE52 1622 aa16.35■□□□□ 0.21
CHD6-208ENST00000480022 CCER1Q8TC90 406 aaPredicted RBP16.34■□□□□ 0.21
CHD6-208ENST00000480022 AQRO60306 1485 aaKnown RBP eCLIP16.33■□□□□ 0.215e-8■■■□□ 17.4
CHD6-208ENST00000480022 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.32■□□□□ 0.2
CHD6-208ENST00000480022 FAM9AQ8IZU1 332 aaPredicted RBP16.32■□□□□ 0.2
CHD6-208ENST00000480022 KIF27Q86VH2 1401 aa16.3■□□□□ 0.2
CHD6-208ENST00000480022 RUSC2Q8N2Y8 1516 aa16.29■□□□□ 0.2
CHD6-208ENST00000480022 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
CHD6-208ENST00000480022 EIF4G3O43432 1585 aaKnown RBP16.29■□□□□ 0.2
CHD6-208ENST00000480022 ANP32EQ9BTT0 268 aa16.28■□□□□ 0.2
CHD6-208ENST00000480022 ABCA5Q8WWZ7 1642 aa16.28■□□□□ 0.2
CHD6-208ENST00000480022 YTHDC1Q96MU7 727 aaKnown RBP16.25■□□□□ 0.19
CHD6-208ENST00000480022 GRIN2BQ13224 1484 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms