RNA–Protein interactions for RNA: ENST00000479941.1

ATG4B-219, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-219ENST00000479941 NISCHQ9Y2I1 1504 aa26.03■■□□□ 1.76
ATG4B-219ENST00000479941 CCDC180Q9P1Z9 1646 aa23.07■■□□□ 1.28
ATG4B-219ENST00000479941 ABCC9O60706 1549 aa22.45■■□□□ 1.18
ATG4B-219ENST00000479941 DCAF8L2P0C7V8 631 aa21.71■■□□□ 1.07
ATG4B-219ENST00000479941 ZCCHC6Q5VYS8 1495 aaKnown RBP21.7■■□□□ 1.06
ATG4B-219ENST00000479941 NACADO15069 1562 aa21.69■■□□□ 1.06
ATG4B-219ENST00000479941 RB1CC1Q8TDY2 1594 aa21.67■■□□□ 1.06
ATG4B-219ENST00000479941 MYO15BQ96JP2 1530 aa21.62■■□□□ 1.05
ATG4B-219ENST00000479941 DCAF1Q9Y4B6 1507 aa21.56■■□□□ 1.04
ATG4B-219ENST00000479941 UNC13AQ9UPW8 1703 aa21.11■□□□□ 0.97
ATG4B-219ENST00000479941 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
ATG4B-219ENST00000479941 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
ATG4B-219ENST00000479941 BICRAQ9NZM4 1560 aa20.97■□□□□ 0.95
ATG4B-219ENST00000479941 SHROOM4Q9ULL8 1493 aa20.83■□□□□ 0.93
ATG4B-219ENST00000479941 DNAJC5BQ9UF47 199 aa20.49■□□□□ 0.87
ATG4B-219ENST00000479941 EIF4G1Q04637 1599 aaKnown RBP20.44■□□□□ 0.86
ATG4B-219ENST00000479941 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
ATG4B-219ENST00000479941 CECR2Q9BXF3 1484 aa20.24■□□□□ 0.83
ATG4B-219ENST00000479941 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
ATG4B-219ENST00000479941 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
ATG4B-219ENST00000479941 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
ATG4B-219ENST00000479941 ATAD2BQ9ULI0 1458 aa20.03■□□□□ 0.8
ATG4B-219ENST00000479941 NCAPD3P42695 1498 aa20.02■□□□□ 0.8
ATG4B-219ENST00000479941 SMARCA2P51531 1590 aa20.02■□□□□ 0.8
ATG4B-219ENST00000479941 PEG3Q9GZU2 1588 aa19.98■□□□□ 0.79
ATG4B-219ENST00000479941 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
ATG4B-219ENST00000479941 RSF1Q96T23 1441 aaPredicted RBP19.88■□□□□ 0.77
ATG4B-219ENST00000479941 BAZ1BQ9UIG0 1483 aaKnown RBP19.87■□□□□ 0.77
ATG4B-219ENST00000479941 WIZO95785 1651 aa19.81■□□□□ 0.76
ATG4B-219ENST00000479941 TOP2AP11388 1531 aaKnown RBP19.64■□□□□ 0.73
ATG4B-219ENST00000479941 SUPT5HO00267 1087 aaKnown RBP19.47■□□□□ 0.71
ATG4B-219ENST00000479941 LAMC3Q9Y6N6 1575 aa19.45■□□□□ 0.7
ATG4B-219ENST00000479941 NESP48681 1621 aa19.45■□□□□ 0.7
ATG4B-219ENST00000479941 CADPSQ9ULU8 1353 aa19.44■□□□□ 0.7
ATG4B-219ENST00000479941 CCDC88BA6NC98 1476 aa19.41■□□□□ 0.7
ATG4B-219ENST00000479941 ERCC6Q03468 1493 aa19.36■□□□□ 0.69
ATG4B-219ENST00000479941 CFTRP13569 1480 aa19.35■□□□□ 0.69
ATG4B-219ENST00000479941 PDS5BQ9NTI5 1447 aa19.34■□□□□ 0.69
ATG4B-219ENST00000479941 KIF21AQ7Z4S6 1674 aa19.2■□□□□ 0.66
ATG4B-219ENST00000479941 FANCD2Q9BXW9 1451 aa19.2■□□□□ 0.66
ATG4B-219ENST00000479941 CEP164Q9UPV0 1460 aa19.16■□□□□ 0.66
ATG4B-219ENST00000479941 PRDM2Q13029 1718 aa19.15■□□□□ 0.66
ATG4B-219ENST00000479941 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
ATG4B-219ENST00000479941 CUX2O14529 1486 aa19.12■□□□□ 0.65
ATG4B-219ENST00000479941 MRC2Q9UBG0 1479 aa19.11■□□□□ 0.65
ATG4B-219ENST00000479941 WDR62O43379 1518 aa19.04■□□□□ 0.64
ATG4B-219ENST00000479941 URB2Q14146 1524 aaKnown RBP18.98■□□□□ 0.63
ATG4B-219ENST00000479941 ABCC8Q09428 1581 aa18.95■□□□□ 0.62
ATG4B-219ENST00000479941 TOPBP1Q92547 1522 aa18.9■□□□□ 0.62
ATG4B-219ENST00000479941 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.62
ATG4B-219ENST00000479941 CUX1P39880 1505 aa18.79■□□□□ 0.6
ATG4B-219ENST00000479941 IFT140Q96RY7 1462 aa18.77■□□□□ 0.6
ATG4B-219ENST00000479941 POLA1P09884 1462 aaPredicted RBP18.76■□□□□ 0.59
ATG4B-219ENST00000479941 WRNQ14191 1432 aaPredicted RBP eCLIP18.74■□□□□ 0.59
ATG4B-219ENST00000479941 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
ATG4B-219ENST00000479941 SOGA1O94964 1423 aa18.69■□□□□ 0.58
ATG4B-219ENST00000479941 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
ATG4B-219ENST00000479941 TARBP1Q13395 1621 aaKnown RBP18.67■□□□□ 0.58
ATG4B-219ENST00000479941 RAD54L2Q9Y4B4 1467 aa18.66■□□□□ 0.58
ATG4B-219ENST00000479941 SYNJ1O43426 1573 aa18.66■□□□□ 0.58
ATG4B-219ENST00000479941 BIVM-ERCC5R4GMW8 1640 aa18.66■□□□□ 0.58
ATG4B-219ENST00000479941 ZNF608Q9ULD9 1512 aaPredicted RBP18.64■□□□□ 0.58
ATG4B-219ENST00000479941 WDR97A6NE52 1622 aa18.57■□□□□ 0.56
ATG4B-219ENST00000479941 EIF4G3O43432 1585 aaKnown RBP18.57■□□□□ 0.56
ATG4B-219ENST00000479941 AQRO60306 1485 aaKnown RBP eCLIP18.57■□□□□ 0.563e-6■■■□□ 15.6
ATG4B-219ENST00000479941 TDRD9Q8NDG6 1382 aaKnown RBP18.56■□□□□ 0.56
ATG4B-219ENST00000479941 ABCA10Q8WWZ4 1543 aa18.56■□□□□ 0.56
ATG4B-219ENST00000479941 GAPVD1Q14C86 1478 aa18.47■□□□□ 0.55
ATG4B-219ENST00000479941 GRIN2BQ13224 1484 aa18.46■□□□□ 0.54
ATG4B-219ENST00000479941 ABCA5Q8WWZ7 1642 aa18.45■□□□□ 0.54
ATG4B-219ENST00000479941 TRIM41Q8WV44 630 aa18.42■□□□□ 0.54
ATG4B-219ENST00000479941 SNAPC4Q5SXM2 1469 aa18.39■□□□□ 0.54
ATG4B-219ENST00000479941 MAGI1Q96QZ7 1491 aaPredicted RBP18.39■□□□□ 0.54
ATG4B-219ENST00000479941 DNAJC5Q9H3Z4 198 aa18.39■□□□□ 0.53
ATG4B-219ENST00000479941 PBRM1Q86U86 1689 aa18.38■□□□□ 0.53
ATG4B-219ENST00000479941 OSCARQ8IYS5 282 aa18.37■□□□□ 0.53
ATG4B-219ENST00000479941 KIF27Q86VH2 1401 aa18.36■□□□□ 0.53
ATG4B-219ENST00000479941 ERICH3Q5RHP9 1530 aa18.34■□□□□ 0.53
ATG4B-219ENST00000479941 FBLN2P98095 1184 aa18.34■□□□□ 0.53
ATG4B-219ENST00000479941 CHMP7Q8WUX9 453 aaPredicted RBP18.33■□□□□ 0.52
ATG4B-219ENST00000479941 SYNJ2O15056 1496 aa18.33■□□□□ 0.52
ATG4B-219ENST00000479941 CHD1O14646 1710 aa18.29■□□□□ 0.52
ATG4B-219ENST00000479941 FHAD1B1AJZ9 1412 aa18.28■□□□□ 0.52
ATG4B-219ENST00000479941 IGF1RP08069 1367 aa18.27■□□□□ 0.51
ATG4B-219ENST00000479941 ADAMTS12P58397 1594 aa18.26■□□□□ 0.51
ATG4B-219ENST00000479941 CHIC1Q5VXU3 224 aa18.25■□□□□ 0.51
ATG4B-219ENST00000479941 GRIN2AQ12879 1464 aa18.21■□□□□ 0.51
ATG4B-219ENST00000479941 CUL7Q14999 1698 aa18.18■□□□□ 0.5
ATG4B-219ENST00000479941 RUSC2Q8N2Y8 1516 aa18.18■□□□□ 0.5
ATG4B-219ENST00000479941 CARMIL1Q5VZK9 1371 aa18.17■□□□□ 0.5
ATG4B-219ENST00000479941 NUP160Q12769 1436 aa18.14■□□□□ 0.49
ATG4B-219ENST00000479941 CLASP1Q7Z460 1538 aa18.13■□□□□ 0.49
ATG4B-219ENST00000479941 EEA1Q15075 1411 aa18.1■□□□□ 0.49
ATG4B-219ENST00000479941 CEP170Q5SW79 1584 aa18.08■□□□□ 0.49
ATG4B-219ENST00000479941 RAPGEF2Q9Y4G8 1499 aa18.07■□□□□ 0.48
ATG4B-219ENST00000479941 CSRNP3Q8WYN3 585 aa18.06■□□□□ 0.48
ATG4B-219ENST00000479941 ARHGEF11O15085 1522 aa18.03■□□□□ 0.48
ATG4B-219ENST00000479941 PRXQ9BXM0 1461 aa18.02■□□□□ 0.48
ATG4B-219ENST00000479941 KIAA0586Q9BVV6 1533 aa18■□□□□ 0.47
ATG4B-219ENST00000479941 RIMBP3CA6NJZ7 1639 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms