RNA–Protein interactions for RNA: ENST00000479003.5

CHKB-208, Transcript of choline kinase beta, humanhuman

TSL 2

Gene CHKB, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-208ENST00000479003 NISCHQ9Y2I1 1504 aa60.88■■■■■ 7.34
CHKB-208ENST00000479003 CCDC180Q9P1Z9 1646 aa53.08■■■■■ 6.09
CHKB-208ENST00000479003 ZCCHC6Q5VYS8 1495 aaKnown RBP51.14■■■■■ 5.78
CHKB-208ENST00000479003 ABCC9O60706 1549 aa50.43■■■■■ 5.66
CHKB-208ENST00000479003 DCAF8L2P0C7V8 631 aa50.39■■■■■ 5.66
CHKB-208ENST00000479003 DCAF1Q9Y4B6 1507 aa50.26■■■■■ 5.64
CHKB-208ENST00000479003 SHROOM4Q9ULL8 1493 aa49.72■■■■■ 5.55
CHKB-208ENST00000479003 MYO15BQ96JP2 1530 aa49.69■■■■■ 5.55
CHKB-208ENST00000479003 NACADO15069 1562 aa49.47■■■■■ 5.51
CHKB-208ENST00000479003 RB1CC1Q8TDY2 1594 aa49.09■■■■■ 5.45
CHKB-208ENST00000479003 SCRIBQ14160 1630 aa48.93■■■■■ 5.42
CHKB-208ENST00000479003 UNC13AQ9UPW8 1703 aa48.2■■■■■ 5.31
CHKB-208ENST00000479003 SUPT5HO00267 1087 aaKnown RBP47.73■■■■■ 5.23
CHKB-208ENST00000479003 BICRAQ9NZM4 1560 aa47.7■■■■■ 5.23
CHKB-208ENST00000479003 PABPN1Q86U42 306 aaKnown RBP eCLIP47.56■■■■■ 5.29e-7■□□□□ 10.2
CHKB-208ENST00000479003 CECR2Q9BXF3 1484 aa47.4■■■■■ 5.18
CHKB-208ENST00000479003 RSF1Q96T23 1441 aaPredicted RBP47.22■■■■■ 5.15
CHKB-208ENST00000479003 MROH2BQ7Z745 1585 aa47.09■■■■■ 5.13
CHKB-208ENST00000479003 BAZ1AQ9NRL2 1556 aaPredicted RBP47■■■■■ 5.11
CHKB-208ENST00000479003 SMARCA4P51532 1647 aa46.85■■■■■ 5.09
CHKB-208ENST00000479003 WIZO95785 1651 aa46.71■■■■■ 5.07
CHKB-208ENST00000479003 CHIC1Q5VXU3 224 aa46.39■■■■■ 5.02
CHKB-208ENST00000479003 EIF4G1Q04637 1599 aaKnown RBP46.25■■■■■ 5
CHKB-208ENST00000479003 PEG3Q9GZU2 1588 aa46.24■■■■■ 4.99
CHKB-208ENST00000479003 TOP2AP11388 1531 aaKnown RBP46.15■■■■■ 4.98
CHKB-208ENST00000479003 ATAD2BQ9ULI0 1458 aa46.1■■■■■ 4.97
CHKB-208ENST00000479003 SMARCA2P51531 1590 aa46.02■■■■■ 4.96
CHKB-208ENST00000479003 BAZ1BQ9UIG0 1483 aaKnown RBP45.83■■■■■ 4.93
CHKB-208ENST00000479003 CCDC88BA6NC98 1476 aa45.71■■■■■ 4.91
CHKB-208ENST00000479003 NCAPD3P42695 1498 aa45.68■■■■■ 4.9
CHKB-208ENST00000479003 HMGXB3Q12766 1538 aa45.61■■■■■ 4.89
CHKB-208ENST00000479003 CC2D2AQ9P2K1 1620 aa45.61■■■■■ 4.89
CHKB-208ENST00000479003 TRIM41Q8WV44 630 aa44.81■■■■■ 4.76
CHKB-208ENST00000479003 LOC105371045A0A1W2PR82 267 aa44.8■■■■■ 4.76
CHKB-208ENST00000479003 ABCC8Q09428 1581 aa44.78■■■■■ 4.76
CHKB-208ENST00000479003 CFTRP13569 1480 aa44.67■■■■■ 4.74
CHKB-208ENST00000479003 DNAJC5BQ9UF47 199 aa44.63■■■■■ 4.74
CHKB-208ENST00000479003 CADPSQ9ULU8 1353 aa44.52■■■■■ 4.72
CHKB-208ENST00000479003 PCGF6Q9BYE7 350 aa44.46■■■■■ 4.71
CHKB-208ENST00000479003 HRCP23327 699 aa44.45■■■■■ 4.71
CHKB-208ENST00000479003 WRNQ14191 1432 aaPredicted RBP eCLIP44.43■■■■■ 4.7
CHKB-208ENST00000479003 PRDM2Q13029 1718 aa44.41■■■■■ 4.7
CHKB-208ENST00000479003 SYNJ1O43426 1573 aa44.31■■■■■ 4.68
CHKB-208ENST00000479003 NESP48681 1621 aa44.28■■■■■ 4.68
CHKB-208ENST00000479003 LAMC3Q9Y6N6 1575 aa44.14■■■■■ 4.66
CHKB-208ENST00000479003 FAM9AQ8IZU1 332 aaPredicted RBP44.09■■■■■ 4.65
CHKB-208ENST00000479003 TOP2BQ02880 1626 aa44.08■■■■■ 4.65
CHKB-208ENST00000479003 FANCD2Q9BXW9 1451 aa44.06■■■■■ 4.64
CHKB-208ENST00000479003 CUX1P39880 1505 aa44.03■■■■■ 4.64
CHKB-208ENST00000479003 BIVM-ERCC5R4GMW8 1640 aa44.02■■■■■ 4.64
CHKB-208ENST00000479003 TRIM26Q12899 539 aaPredicted RBP43.91■■■■■ 4.62
CHKB-208ENST00000479003 SOGA1O94964 1423 aa43.9■■■■■ 4.62
CHKB-208ENST00000479003 PDS5BQ9NTI5 1447 aa43.8■■■■■ 4.6
CHKB-208ENST00000479003 CEP164Q9UPV0 1460 aa43.77■■■■■ 4.6
CHKB-208ENST00000479003 RUSC2Q8N2Y8 1516 aa43.76■■■■■ 4.6
CHKB-208ENST00000479003 KIF21AQ7Z4S6 1674 aa43.71■■■■■ 4.59
CHKB-208ENST00000479003 EEA1Q15075 1411 aa43.63■■■■■ 4.57
CHKB-208ENST00000479003 DNMBPQ6XZF7 1577 aa43.62■■■■■ 4.57
CHKB-208ENST00000479003 TOPBP1Q92547 1522 aa43.57■■■■■ 4.57
CHKB-208ENST00000479003 FGD5Q6ZNL6 1462 aa43.56■■■■■ 4.56
CHKB-208ENST00000479003 URB2Q14146 1524 aaKnown RBP43.54■■■■■ 4.56
CHKB-208ENST00000479003 EHMT2Q96KQ7 1210 aa43.54■■■■■ 4.56
CHKB-208ENST00000479003 CSRNP3Q8WYN3 585 aa43.47■■■■■ 4.55
CHKB-208ENST00000479003 POLA1P09884 1462 aaPredicted RBP43.37■■■■■ 4.53
CHKB-208ENST00000479003 PPARGC1BQ86YN6 1023 aaKnown RBP43.31■■■■■ 4.52
CHKB-208ENST00000479003 KIF27Q86VH2 1401 aa43.28■■■■■ 4.52
CHKB-208ENST00000479003 MRC2Q9UBG0 1479 aa43.27■■■■■ 4.52
CHKB-208ENST00000479003 RAD54L2Q9Y4B4 1467 aa43.26■■■■■ 4.52
CHKB-208ENST00000479003 CUX2O14529 1486 aa43.24■■■■■ 4.51
CHKB-208ENST00000479003 ERCC6Q03468 1493 aa43.21■■■■■ 4.51
CHKB-208ENST00000479003 KIF21BO75037 1637 aa43.14■■■■■ 4.5
CHKB-208ENST00000479003 ABCA10Q8WWZ4 1543 aa43.13■■■■■ 4.5
CHKB-208ENST00000479003 GOLGA3Q08378 1498 aa43.09■■■■■ 4.49
CHKB-208ENST00000479003 WDR62O43379 1518 aa43.07■■■■■ 4.48
CHKB-208ENST00000479003 WDR97A6NE52 1622 aa43.03■■■■■ 4.48
CHKB-208ENST00000479003 RAPGEF2Q9Y4G8 1499 aa43■■■■■ 4.47
CHKB-208ENST00000479003 THOC2Q8NI27 1593 aaKnown RBP43■■■■■ 4.47
CHKB-208ENST00000479003 PRXQ9BXM0 1461 aa42.99■■■■■ 4.47
CHKB-208ENST00000479003 IGF1RP08069 1367 aa42.95■■■■■ 4.47
CHKB-208ENST00000479003 TARBP1Q13395 1621 aaKnown RBP42.94■■■■■ 4.46
CHKB-208ENST00000479003 UBTFP17480 764 aaKnown RBP42.94■■■■■ 4.46
CHKB-208ENST00000479003 ZEB1P37275 1124 aaPredicted RBP42.92■■■■■ 4.46
CHKB-208ENST00000479003 TNIKQ9UKE5 1360 aa42.92■■■■■ 4.46
CHKB-208ENST00000479003 ERICH3Q5RHP9 1530 aa42.86■■■■■ 4.45
CHKB-208ENST00000479003 TDRD9Q8NDG6 1382 aaKnown RBP42.84■■■■■ 4.45
CHKB-208ENST00000479003 ABCA5Q8WWZ7 1642 aa42.82■■■■■ 4.44
CHKB-208ENST00000479003 CEP162Q5TB80 1403 aa42.75■■■■■ 4.43
CHKB-208ENST00000479003 GAPVD1Q14C86 1478 aa42.72■■■■■ 4.43
CHKB-208ENST00000479003 CARMIL1Q5VZK9 1371 aa42.71■■■■■ 4.43
CHKB-208ENST00000479003 IFT140Q96RY7 1462 aa42.7■■■■■ 4.43
CHKB-208ENST00000479003 AQRO60306 1485 aaKnown RBP eCLIP42.59■■■■■ 4.413e-8■■■■■ 28.1
CHKB-208ENST00000479003 CUL7Q14999 1698 aa42.58■■■■■ 4.41
CHKB-208ENST00000479003 ZNF608Q9ULD9 1512 aaPredicted RBP42.58■■■■■ 4.41
CHKB-208ENST00000479003 PBRM1Q86U86 1689 aa42.51■■■■■ 4.4
CHKB-208ENST00000479003 CLIP1P30622 1438 aa42.43■■■■■ 4.38
CHKB-208ENST00000479003 EIF4G3O43432 1585 aaKnown RBP42.41■■■■■ 4.38
CHKB-208ENST00000479003 RANGAP1P46060 587 aaPredicted RBP42.38■■■■■ 4.38
CHKB-208ENST00000479003 GRIN2BQ13224 1484 aa42.38■■■■■ 4.37
CHKB-208ENST00000479003 ADAMTS12P58397 1594 aa42.27■■■■■ 4.36
CHKB-208ENST00000479003 FHAD1B1AJZ9 1412 aa42.23■■■■■ 4.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms