RNA–Protein interactions for RNA: ENST00000478507.1

TDP2-204, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

TSL 5

Gene TDP2, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-204ENST00000478507 NISCHQ9Y2I1 1504 aa32.57■■■□□ 2.8
TDP2-204ENST00000478507 ABCC9O60706 1549 aa29.4■■■□□ 2.3
TDP2-204ENST00000478507 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
TDP2-204ENST00000478507 RB1CC1Q8TDY2 1594 aa27.94■■■□□ 2.06
TDP2-204ENST00000478507 DNAJC5BQ9UF47 199 aa27.76■■■□□ 2.03
TDP2-204ENST00000478507 NACADO15069 1562 aa27.73■■■□□ 2.03
TDP2-204ENST00000478507 DCAF8L2P0C7V8 631 aa27.37■■□□□ 1.97
TDP2-204ENST00000478507 UNC13AQ9UPW8 1703 aa27.37■■□□□ 1.97
TDP2-204ENST00000478507 MYO15BQ96JP2 1530 aa27.36■■□□□ 1.97
TDP2-204ENST00000478507 PABPN1Q86U42 306 aaKnown RBP eCLIP27.31■■□□□ 1.96
TDP2-204ENST00000478507 BICRAQ9NZM4 1560 aa27.2■■□□□ 1.94
TDP2-204ENST00000478507 ZCCHC6Q5VYS8 1495 aaKnown RBP26.98■■□□□ 1.91
TDP2-204ENST00000478507 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
TDP2-204ENST00000478507 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
TDP2-204ENST00000478507 SCRIBQ14160 1630 aa26.64■■□□□ 1.85
TDP2-204ENST00000478507 CC2D2AQ9P2K1 1620 aa26.59■■□□□ 1.85
TDP2-204ENST00000478507 CECR2Q9BXF3 1484 aa26.51■■□□□ 1.83
TDP2-204ENST00000478507 EIF4G1Q04637 1599 aaKnown RBP26.5■■□□□ 1.83
TDP2-204ENST00000478507 NCAPD3P42695 1498 aa25.62■■□□□ 1.69
TDP2-204ENST00000478507 DNAJC5Q9H3Z4 198 aa25.58■■□□□ 1.69
TDP2-204ENST00000478507 ATAD2BQ9ULI0 1458 aa25.51■■□□□ 1.67
TDP2-204ENST00000478507 CUX2O14529 1486 aa25.44■■□□□ 1.66
TDP2-204ENST00000478507 SMARCA4P51532 1647 aa25.44■■□□□ 1.66
TDP2-204ENST00000478507 HMGXB3Q12766 1538 aa25.42■■□□□ 1.66
TDP2-204ENST00000478507 SMARCA2P51531 1590 aa25.4■■□□□ 1.66
TDP2-204ENST00000478507 ERCC6Q03468 1493 aa25.35■■□□□ 1.65
TDP2-204ENST00000478507 BAZ1AQ9NRL2 1556 aaPredicted RBP25.28■■□□□ 1.64
TDP2-204ENST00000478507 PEG3Q9GZU2 1588 aa25.25■■□□□ 1.63
TDP2-204ENST00000478507 NESP48681 1621 aa25.24■■□□□ 1.63
TDP2-204ENST00000478507 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
TDP2-204ENST00000478507 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
TDP2-204ENST00000478507 THOC2Q8NI27 1593 aaKnown RBP25.05■■□□□ 1.6
TDP2-204ENST00000478507 LAMC3Q9Y6N6 1575 aa25.05■■□□□ 1.6
TDP2-204ENST00000478507 KIF21AQ7Z4S6 1674 aa24.91■■□□□ 1.58
TDP2-204ENST00000478507 PDS5BQ9NTI5 1447 aa24.86■■□□□ 1.57
TDP2-204ENST00000478507 CADPSQ9ULU8 1353 aa24.8■■□□□ 1.56
TDP2-204ENST00000478507 WIZO95785 1651 aa24.77■■□□□ 1.56
TDP2-204ENST00000478507 MRC2Q9UBG0 1479 aa24.69■■□□□ 1.54
TDP2-204ENST00000478507 WDR62O43379 1518 aa24.67■■□□□ 1.54
TDP2-204ENST00000478507 CEP164Q9UPV0 1460 aa24.54■■□□□ 1.52
TDP2-204ENST00000478507 RSF1Q96T23 1441 aaPredicted RBP24.52■■□□□ 1.52
TDP2-204ENST00000478507 CFTRP13569 1480 aa24.51■■□□□ 1.51
TDP2-204ENST00000478507 FANCD2Q9BXW9 1451 aa24.51■■□□□ 1.51
TDP2-204ENST00000478507 TOP2AP11388 1531 aaKnown RBP24.45■■□□□ 1.51
TDP2-204ENST00000478507 URB2Q14146 1524 aaKnown RBP24.35■■□□□ 1.49
TDP2-204ENST00000478507 TRIM41Q8WV44 630 aa24.29■■□□□ 1.48
TDP2-204ENST00000478507 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
TDP2-204ENST00000478507 OSCARQ8IYS5 282 aa24.18■■□□□ 1.46
TDP2-204ENST00000478507 CCDC88BA6NC98 1476 aa24.17■■□□□ 1.46
TDP2-204ENST00000478507 IFT140Q96RY7 1462 aa24.07■■□□□ 1.44
TDP2-204ENST00000478507 ZNF608Q9ULD9 1512 aaPredicted RBP24.06■■□□□ 1.44
TDP2-204ENST00000478507 TOPBP1Q92547 1522 aa24.05■■□□□ 1.44
TDP2-204ENST00000478507 ABCC8Q09428 1581 aa23.96■■□□□ 1.43
TDP2-204ENST00000478507 RIMBP3CA6NJZ7 1639 aa23.95■■□□□ 1.42
TDP2-204ENST00000478507 RIMBP3BA6NNM3 1639 aa23.95■■□□□ 1.42
TDP2-204ENST00000478507 RIMBP3Q9UFD9 1639 aa23.95■■□□□ 1.42
TDP2-204ENST00000478507 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.42
TDP2-204ENST00000478507 EIF4G3O43432 1585 aaKnown RBP23.93■■□□□ 1.42
TDP2-204ENST00000478507 TARBP1Q13395 1621 aaKnown RBP23.88■■□□□ 1.41
TDP2-204ENST00000478507 ARHGEF11O15085 1522 aa23.86■■□□□ 1.41
TDP2-204ENST00000478507 AQRO60306 1485 aaKnown RBP eCLIP23.8■■□□□ 1.41e-6■■■■□ 26.1
TDP2-204ENST00000478507 POLA1P09884 1462 aaPredicted RBP23.8■■□□□ 1.4
TDP2-204ENST00000478507 CHD1O14646 1710 aa23.77■■□□□ 1.4
TDP2-204ENST00000478507 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
TDP2-204ENST00000478507 SOGA1O94964 1423 aa23.64■■□□□ 1.37
TDP2-204ENST00000478507 ARAP1Q96P48 1450 aa23.62■■□□□ 1.37
TDP2-204ENST00000478507 WDR97A6NE52 1622 aa23.62■■□□□ 1.37
TDP2-204ENST00000478507 CYB5RLQ6IPT4 315 aa23.61■■□□□ 1.37
TDP2-204ENST00000478507 TDRD9Q8NDG6 1382 aaKnown RBP23.61■■□□□ 1.37
TDP2-204ENST00000478507 FGD5Q6ZNL6 1462 aa23.61■■□□□ 1.37
TDP2-204ENST00000478507 CUX1P39880 1505 aa23.59■■□□□ 1.37
TDP2-204ENST00000478507 FBLN2P98095 1184 aa23.57■■□□□ 1.36
TDP2-204ENST00000478507 SNAPC4Q5SXM2 1469 aa23.56■■□□□ 1.36
TDP2-204ENST00000478507 CLASP1Q7Z460 1538 aa23.54■■□□□ 1.36
TDP2-204ENST00000478507 MAGI1Q96QZ7 1491 aaPredicted RBP23.5■■□□□ 1.35
TDP2-204ENST00000478507 GRIN2BQ13224 1484 aa23.47■■□□□ 1.35
TDP2-204ENST00000478507 SYNJ1O43426 1573 aa23.44■■□□□ 1.34
TDP2-204ENST00000478507 SYNJ2O15056 1496 aa23.43■■□□□ 1.34
TDP2-204ENST00000478507 CHMP7Q8WUX9 453 aaPredicted RBP23.4■■□□□ 1.34
TDP2-204ENST00000478507 PBRM1Q86U86 1689 aa23.38■■□□□ 1.33
TDP2-204ENST00000478507 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
TDP2-204ENST00000478507 ABCA10Q8WWZ4 1543 aa23.36■■□□□ 1.33
TDP2-204ENST00000478507 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
TDP2-204ENST00000478507 TRHP20396 242 aaPredicted RBP23.34■■□□□ 1.33
TDP2-204ENST00000478507 WRNQ14191 1432 aaPredicted RBP eCLIP23.19■■□□□ 1.3
TDP2-204ENST00000478507 GRIN2AQ12879 1464 aa23.18■■□□□ 1.3
TDP2-204ENST00000478507 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
TDP2-204ENST00000478507 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
TDP2-204ENST00000478507 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
TDP2-204ENST00000478507 SUPT5HO00267 1087 aaKnown RBP23.16■■□□□ 1.3
TDP2-204ENST00000478507 NUP160Q12769 1436 aa23.15■■□□□ 1.3
TDP2-204ENST00000478507 ERCC6L2Q5T890 1561 aa23.14■■□□□ 1.29
TDP2-204ENST00000478507 CEP170Q5SW79 1584 aa23.13■■□□□ 1.29
TDP2-204ENST00000478507 SHROOM2Q13796 1616 aa23.08■■□□□ 1.29
TDP2-204ENST00000478507 FHAD1B1AJZ9 1412 aa23.07■■□□□ 1.28
TDP2-204ENST00000478507 ERICH3Q5RHP9 1530 aa23.05■■□□□ 1.28
TDP2-204ENST00000478507 PRG4Q92954 1404 aaPredicted RBP22.87■■□□□ 1.25
TDP2-204ENST00000478507 RUSC2Q8N2Y8 1516 aa22.86■■□□□ 1.25
TDP2-204ENST00000478507 KIF13AQ9H1H9 1805 aa22.84■■□□□ 1.25
TDP2-204ENST00000478507 JPH4Q96JJ6 628 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms