RNA–Protein interactions for RNA: ENST00000478288.5

ABCF3-212, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 3

Gene ABCF3, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-212ENST00000478288 NISCHQ9Y2I1 1504 aa32.75■■■□□ 2.83
ABCF3-212ENST00000478288 CCDC180Q9P1Z9 1646 aa29.48■■■□□ 2.31
ABCF3-212ENST00000478288 ABCC9O60706 1549 aa29.28■■■□□ 2.28
ABCF3-212ENST00000478288 RB1CC1Q8TDY2 1594 aa28■■■□□ 2.07
ABCF3-212ENST00000478288 NACADO15069 1562 aa27.84■■■□□ 2.05
ABCF3-212ENST00000478288 MYO15BQ96JP2 1530 aa27.53■■■□□ 2
ABCF3-212ENST00000478288 DNAJC5BQ9UF47 199 aa27.42■■□□□ 1.98
ABCF3-212ENST00000478288 DCAF8L2P0C7V8 631 aa27.41■■□□□ 1.98
ABCF3-212ENST00000478288 UNC13AQ9UPW8 1703 aa27.38■■□□□ 1.97
ABCF3-212ENST00000478288 PABPN1Q86U42 306 aaKnown RBP eCLIP27.2■■□□□ 1.94
ABCF3-212ENST00000478288 ZCCHC6Q5VYS8 1495 aaKnown RBP27.17■■□□□ 1.94
ABCF3-212ENST00000478288 BICRAQ9NZM4 1560 aa27.17■■□□□ 1.94
ABCF3-212ENST00000478288 DCAF1Q9Y4B6 1507 aa27.15■■□□□ 1.94
ABCF3-212ENST00000478288 SHROOM4Q9ULL8 1493 aa26.94■■□□□ 1.9
ABCF3-212ENST00000478288 SCRIBQ14160 1630 aa26.72■■□□□ 1.87
ABCF3-212ENST00000478288 CC2D2AQ9P2K1 1620 aa26.53■■□□□ 1.84
ABCF3-212ENST00000478288 EIF4G1Q04637 1599 aaKnown RBP26.5■■□□□ 1.83
ABCF3-212ENST00000478288 CECR2Q9BXF3 1484 aa26.43■■□□□ 1.82
ABCF3-212ENST00000478288 NCAPD3P42695 1498 aa25.67■■□□□ 1.7
ABCF3-212ENST00000478288 SMARCA4P51532 1647 aa25.55■■□□□ 1.68
ABCF3-212ENST00000478288 ATAD2BQ9ULI0 1458 aa25.55■■□□□ 1.68
ABCF3-212ENST00000478288 SMARCA2P51531 1590 aa25.54■■□□□ 1.68
ABCF3-212ENST00000478288 HMGXB3Q12766 1538 aa25.52■■□□□ 1.68
ABCF3-212ENST00000478288 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
ABCF3-212ENST00000478288 PEG3Q9GZU2 1588 aa25.38■■□□□ 1.65
ABCF3-212ENST00000478288 CUX2O14529 1486 aa25.37■■□□□ 1.65
ABCF3-212ENST00000478288 ERCC6Q03468 1493 aa25.33■■□□□ 1.65
ABCF3-212ENST00000478288 BAZ1BQ9UIG0 1483 aaKnown RBP25.3■■□□□ 1.64
ABCF3-212ENST00000478288 DNAJC5Q9H3Z4 198 aa25.26■■□□□ 1.63
ABCF3-212ENST00000478288 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
ABCF3-212ENST00000478288 NESP48681 1621 aa25.16■■□□□ 1.62
ABCF3-212ENST00000478288 LAMC3Q9Y6N6 1575 aa25.11■■□□□ 1.61
ABCF3-212ENST00000478288 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
ABCF3-212ENST00000478288 PDS5BQ9NTI5 1447 aa24.93■■□□□ 1.58
ABCF3-212ENST00000478288 KIF21AQ7Z4S6 1674 aa24.91■■□□□ 1.58
ABCF3-212ENST00000478288 WIZO95785 1651 aa24.88■■□□□ 1.57
ABCF3-212ENST00000478288 CADPSQ9ULU8 1353 aa24.85■■□□□ 1.57
ABCF3-212ENST00000478288 MRC2Q9UBG0 1479 aa24.7■■□□□ 1.55
ABCF3-212ENST00000478288 WDR62O43379 1518 aa24.69■■□□□ 1.54
ABCF3-212ENST00000478288 RSF1Q96T23 1441 aaPredicted RBP24.68■■□□□ 1.54
ABCF3-212ENST00000478288 TOP2AP11388 1531 aaKnown RBP24.63■■□□□ 1.53
ABCF3-212ENST00000478288 CFTRP13569 1480 aa24.6■■□□□ 1.53
ABCF3-212ENST00000478288 CEP164Q9UPV0 1460 aa24.6■■□□□ 1.53
ABCF3-212ENST00000478288 FANCD2Q9BXW9 1451 aa24.56■■□□□ 1.52
ABCF3-212ENST00000478288 PRDM2Q13029 1718 aa24.44■■□□□ 1.5
ABCF3-212ENST00000478288 URB2Q14146 1524 aaKnown RBP24.35■■□□□ 1.49
ABCF3-212ENST00000478288 CCDC88BA6NC98 1476 aa24.28■■□□□ 1.48
ABCF3-212ENST00000478288 IFT140Q96RY7 1462 aa24.13■■□□□ 1.45
ABCF3-212ENST00000478288 ABCC8Q09428 1581 aa24.12■■□□□ 1.45
ABCF3-212ENST00000478288 OSCARQ8IYS5 282 aa24.11■■□□□ 1.45
ABCF3-212ENST00000478288 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
ABCF3-212ENST00000478288 DNMBPQ6XZF7 1577 aa24.05■■□□□ 1.44
ABCF3-212ENST00000478288 ZNF608Q9ULD9 1512 aaPredicted RBP24.02■■□□□ 1.44
ABCF3-212ENST00000478288 TRIM41Q8WV44 630 aa24.02■■□□□ 1.44
ABCF3-212ENST00000478288 EIF4G3O43432 1585 aaKnown RBP23.95■■□□□ 1.43
ABCF3-212ENST00000478288 TARBP1Q13395 1621 aaKnown RBP23.92■■□□□ 1.42
ABCF3-212ENST00000478288 POLA1P09884 1462 aaPredicted RBP23.86■■□□□ 1.41
ABCF3-212ENST00000478288 RIMBP3CA6NJZ7 1639 aa23.84■■□□□ 1.41
ABCF3-212ENST00000478288 RIMBP3BA6NNM3 1639 aa23.84■■□□□ 1.41
ABCF3-212ENST00000478288 RIMBP3Q9UFD9 1639 aa23.84■■□□□ 1.41
ABCF3-212ENST00000478288 WDR97A6NE52 1622 aa23.78■■□□□ 1.4
ABCF3-212ENST00000478288 AQRO60306 1485 aaKnown RBP eCLIP23.78■■□□□ 1.45e-8■■■■□ 26.4
ABCF3-212ENST00000478288 CHD1O14646 1710 aa23.77■■□□□ 1.4
ABCF3-212ENST00000478288 ARHGEF11O15085 1522 aa23.77■■□□□ 1.4
ABCF3-212ENST00000478288 SOGA1O94964 1423 aa23.71■■□□□ 1.39
ABCF3-212ENST00000478288 RAD54L2Q9Y4B4 1467 aa23.7■■□□□ 1.38
ABCF3-212ENST00000478288 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
ABCF3-212ENST00000478288 CUX1P39880 1505 aa23.68■■□□□ 1.38
ABCF3-212ENST00000478288 TDRD9Q8NDG6 1382 aaKnown RBP23.63■■□□□ 1.37
ABCF3-212ENST00000478288 MAGI1Q96QZ7 1491 aaPredicted RBP23.6■■□□□ 1.37
ABCF3-212ENST00000478288 SNAPC4Q5SXM2 1469 aa23.58■■□□□ 1.37
ABCF3-212ENST00000478288 GRIN2BQ13224 1484 aa23.56■■□□□ 1.36
ABCF3-212ENST00000478288 FBLN2P98095 1184 aa23.55■■□□□ 1.36
ABCF3-212ENST00000478288 ARAP1Q96P48 1450 aa23.52■■□□□ 1.36
ABCF3-212ENST00000478288 CLASP1Q7Z460 1538 aa23.52■■□□□ 1.36
ABCF3-212ENST00000478288 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
ABCF3-212ENST00000478288 SYNJ2O15056 1496 aa23.49■■□□□ 1.35
ABCF3-212ENST00000478288 PBRM1Q86U86 1689 aa23.48■■□□□ 1.35
ABCF3-212ENST00000478288 CYB5RLQ6IPT4 315 aa23.48■■□□□ 1.35
ABCF3-212ENST00000478288 ABCA10Q8WWZ4 1543 aa23.47■■□□□ 1.35
ABCF3-212ENST00000478288 GAPVD1Q14C86 1478 aa23.46■■□□□ 1.35
ABCF3-212ENST00000478288 ABCA5Q8WWZ7 1642 aa23.45■■□□□ 1.34
ABCF3-212ENST00000478288 CHMP7Q8WUX9 453 aaPredicted RBP23.45■■□□□ 1.34
ABCF3-212ENST00000478288 SUPT5HO00267 1087 aaKnown RBP23.41■■□□□ 1.34
ABCF3-212ENST00000478288 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
ABCF3-212ENST00000478288 WRNQ14191 1432 aaPredicted RBP eCLIP23.35■■□□□ 1.33
ABCF3-212ENST00000478288 TOP2BQ02880 1626 aa23.35■■□□□ 1.33
ABCF3-212ENST00000478288 ADAMTS12P58397 1594 aa23.27■■□□□ 1.32
ABCF3-212ENST00000478288 GRIN2AQ12879 1464 aa23.25■■□□□ 1.31
ABCF3-212ENST00000478288 ERICH3Q5RHP9 1530 aa23.2■■□□□ 1.3
ABCF3-212ENST00000478288 NUP160Q12769 1436 aa23.2■■□□□ 1.3
ABCF3-212ENST00000478288 TRHP20396 242 aaPredicted RBP23.19■■□□□ 1.3
ABCF3-212ENST00000478288 FHAD1B1AJZ9 1412 aa23.17■■□□□ 1.3
ABCF3-212ENST00000478288 CEP170Q5SW79 1584 aa23.16■■□□□ 1.3
ABCF3-212ENST00000478288 SHROOM2Q13796 1616 aa23.12■■□□□ 1.29
ABCF3-212ENST00000478288 ERCC6L2Q5T890 1561 aa23.07■■□□□ 1.28
ABCF3-212ENST00000478288 RUSC2Q8N2Y8 1516 aa22.94■■□□□ 1.26
ABCF3-212ENST00000478288 PRG4Q92954 1404 aaPredicted RBP22.9■■□□□ 1.26
ABCF3-212ENST00000478288 CUL7Q14999 1698 aa22.87■■□□□ 1.25
ABCF3-212ENST00000478288 JPH4Q96JJ6 628 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms