RNA–Protein interactions for RNA: ENST00000478215.1

COL1A2-207, Transcript of collagen type I alpha 2 chain, humanhuman

TSL 3

Gene COL1A2, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A2-207ENST00000478215 NISCHQ9Y2I1 1504 aa31.89■■■□□ 2.7
COL1A2-207ENST00000478215 CCDC180Q9P1Z9 1646 aa28.48■■■□□ 2.15
COL1A2-207ENST00000478215 ABCC9O60706 1549 aa27.79■■■□□ 2.04
COL1A2-207ENST00000478215 RB1CC1Q8TDY2 1594 aa26.73■■□□□ 1.87
COL1A2-207ENST00000478215 NACADO15069 1562 aa26.67■■□□□ 1.86
COL1A2-207ENST00000478215 ZCCHC6Q5VYS8 1495 aaKnown RBP26.56■■□□□ 1.84
COL1A2-207ENST00000478215 DCAF8L2P0C7V8 631 aa26.55■■□□□ 1.84
COL1A2-207ENST00000478215 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
COL1A2-207ENST00000478215 UNC13AQ9UPW8 1703 aa26.41■■□□□ 1.82
COL1A2-207ENST00000478215 DCAF1Q9Y4B6 1507 aa26.36■■□□□ 1.81
COL1A2-207ENST00000478215 BICRAQ9NZM4 1560 aa26■■□□□ 1.75
COL1A2-207ENST00000478215 SCRIBQ14160 1630 aa25.96■■□□□ 1.75
COL1A2-207ENST00000478215 PABPN1Q86U42 306 aaKnown RBP eCLIP25.9■■□□□ 1.74
COL1A2-207ENST00000478215 SHROOM4Q9ULL8 1493 aa25.57■■□□□ 1.68
COL1A2-207ENST00000478215 DNAJC5BQ9UF47 199 aa25.5■■□□□ 1.67
COL1A2-207ENST00000478215 EIF4G1Q04637 1599 aaKnown RBP25.27■■□□□ 1.64
COL1A2-207ENST00000478215 CC2D2AQ9P2K1 1620 aa25.21■■□□□ 1.63
COL1A2-207ENST00000478215 CECR2Q9BXF3 1484 aa24.94■■□□□ 1.58
COL1A2-207ENST00000478215 SMARCA4P51532 1647 aa24.83■■□□□ 1.56
COL1A2-207ENST00000478215 BAZ1AQ9NRL2 1556 aaPredicted RBP24.71■■□□□ 1.55
COL1A2-207ENST00000478215 MROH2BQ7Z745 1585 aa24.61■■□□□ 1.53
COL1A2-207ENST00000478215 ATAD2BQ9ULI0 1458 aa24.6■■□□□ 1.53
COL1A2-207ENST00000478215 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
COL1A2-207ENST00000478215 NCAPD3P42695 1498 aa24.56■■□□□ 1.52
COL1A2-207ENST00000478215 PEG3Q9GZU2 1588 aa24.54■■□□□ 1.52
COL1A2-207ENST00000478215 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
COL1A2-207ENST00000478215 WIZO95785 1651 aa24.43■■□□□ 1.5
COL1A2-207ENST00000478215 BAZ1BQ9UIG0 1483 aaKnown RBP24.4■■□□□ 1.5
COL1A2-207ENST00000478215 RSF1Q96T23 1441 aaPredicted RBP24.25■■□□□ 1.47
COL1A2-207ENST00000478215 NESP48681 1621 aa24.08■■□□□ 1.45
COL1A2-207ENST00000478215 TOP2AP11388 1531 aaKnown RBP24.06■■□□□ 1.44
COL1A2-207ENST00000478215 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
COL1A2-207ENST00000478215 KIF21AQ7Z4S6 1674 aa23.94■■□□□ 1.42
COL1A2-207ENST00000478215 ERCC6Q03468 1493 aa23.91■■□□□ 1.42
COL1A2-207ENST00000478215 PRDM2Q13029 1718 aa23.82■■□□□ 1.4
COL1A2-207ENST00000478215 CADPSQ9ULU8 1353 aa23.82■■□□□ 1.4
COL1A2-207ENST00000478215 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
COL1A2-207ENST00000478215 CCDC88BA6NC98 1476 aa23.75■■□□□ 1.39
COL1A2-207ENST00000478215 PDS5BQ9NTI5 1447 aa23.73■■□□□ 1.39
COL1A2-207ENST00000478215 CFTRP13569 1480 aa23.71■■□□□ 1.39
COL1A2-207ENST00000478215 CUX2O14529 1486 aa23.68■■□□□ 1.38
COL1A2-207ENST00000478215 FANCD2Q9BXW9 1451 aa23.6■■□□□ 1.37
COL1A2-207ENST00000478215 CEP164Q9UPV0 1460 aa23.58■■□□□ 1.37
COL1A2-207ENST00000478215 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
COL1A2-207ENST00000478215 MRC2Q9UBG0 1479 aa23.55■■□□□ 1.36
COL1A2-207ENST00000478215 WDR62O43379 1518 aa23.52■■□□□ 1.36
COL1A2-207ENST00000478215 URB2Q14146 1524 aaKnown RBP23.41■■□□□ 1.34
COL1A2-207ENST00000478215 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
COL1A2-207ENST00000478215 DNMBPQ6XZF7 1577 aa23.25■■□□□ 1.31
COL1A2-207ENST00000478215 ABCC8Q09428 1581 aa23.17■■□□□ 1.3
COL1A2-207ENST00000478215 CUX1P39880 1505 aa23.09■■□□□ 1.29
COL1A2-207ENST00000478215 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.28
COL1A2-207ENST00000478215 IFT140Q96RY7 1462 aa23.05■■□□□ 1.28
COL1A2-207ENST00000478215 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
COL1A2-207ENST00000478215 ZNF608Q9ULD9 1512 aaPredicted RBP23.02■■□□□ 1.28
COL1A2-207ENST00000478215 EIF4G3O43432 1585 aaKnown RBP22.99■■□□□ 1.27
COL1A2-207ENST00000478215 FGD5Q6ZNL6 1462 aa22.98■■□□□ 1.27
COL1A2-207ENST00000478215 WDR97A6NE52 1622 aa22.96■■□□□ 1.27
COL1A2-207ENST00000478215 BIVM-ERCC5R4GMW8 1640 aa22.95■■□□□ 1.26
COL1A2-207ENST00000478215 RAD54L2Q9Y4B4 1467 aa22.94■■□□□ 1.26
COL1A2-207ENST00000478215 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
COL1A2-207ENST00000478215 SYNJ1O43426 1573 aa22.92■■□□□ 1.26
COL1A2-207ENST00000478215 TOP2BQ02880 1626 aa22.9■■□□□ 1.26
COL1A2-207ENST00000478215 SOGA1O94964 1423 aa22.89■■□□□ 1.25
COL1A2-207ENST00000478215 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.25
COL1A2-207ENST00000478215 WRNQ14191 1432 aaPredicted RBP eCLIP22.84■■□□□ 1.25
COL1A2-207ENST00000478215 CHD1O14646 1710 aa22.82■■□□□ 1.24
COL1A2-207ENST00000478215 PBRM1Q86U86 1689 aa22.81■■□□□ 1.24
COL1A2-207ENST00000478215 TDRD9Q8NDG6 1382 aaKnown RBP22.77■■□□□ 1.24
COL1A2-207ENST00000478215 ABCA5Q8WWZ7 1642 aa22.75■■□□□ 1.23
COL1A2-207ENST00000478215 ABCA10Q8WWZ4 1543 aa22.74■■□□□ 1.23
COL1A2-207ENST00000478215 GAPVD1Q14C86 1478 aa22.66■■□□□ 1.22
COL1A2-207ENST00000478215 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
COL1A2-207ENST00000478215 GRIN2BQ13224 1484 aa22.64■■□□□ 1.21
COL1A2-207ENST00000478215 OSCARQ8IYS5 282 aa22.61■■□□□ 1.21
COL1A2-207ENST00000478215 AEBP2Q6ZN18 517 aaPredicted RBP22.6■■□□□ 1.21
COL1A2-207ENST00000478215 MAGI1Q96QZ7 1491 aaPredicted RBP22.6■■□□□ 1.21
COL1A2-207ENST00000478215 ADAMTS12P58397 1594 aa22.52■■□□□ 1.2
COL1A2-207ENST00000478215 FBLN2P98095 1184 aa22.51■■□□□ 1.19
COL1A2-207ENST00000478215 SYNJ2O15056 1496 aa22.51■■□□□ 1.19
COL1A2-207ENST00000478215 ERICH3Q5RHP9 1530 aa22.47■■□□□ 1.19
COL1A2-207ENST00000478215 RIMBP3CA6NJZ7 1639 aa22.45■■□□□ 1.18
COL1A2-207ENST00000478215 RIMBP3BA6NNM3 1639 aa22.45■■□□□ 1.18
COL1A2-207ENST00000478215 RIMBP3Q9UFD9 1639 aa22.45■■□□□ 1.18
COL1A2-207ENST00000478215 CLASP1Q7Z460 1538 aa22.42■■□□□ 1.18
COL1A2-207ENST00000478215 CHMP7Q8WUX9 453 aaPredicted RBP22.42■■□□□ 1.18
COL1A2-207ENST00000478215 GRIN2AQ12879 1464 aa22.38■■□□□ 1.17
COL1A2-207ENST00000478215 ARHGEF11O15085 1522 aa22.37■■□□□ 1.17
COL1A2-207ENST00000478215 FHAD1B1AJZ9 1412 aa22.36■■□□□ 1.17
COL1A2-207ENST00000478215 CEP170Q5SW79 1584 aa22.34■■□□□ 1.17
COL1A2-207ENST00000478215 KIF27Q86VH2 1401 aa22.34■■□□□ 1.17
COL1A2-207ENST00000478215 CUL7Q14999 1698 aa22.34■■□□□ 1.17
COL1A2-207ENST00000478215 NUP160Q12769 1436 aa22.27■■□□□ 1.16
COL1A2-207ENST00000478215 IGF1RP08069 1367 aa22.26■■□□□ 1.15
COL1A2-207ENST00000478215 RUSC2Q8N2Y8 1516 aa22.24■■□□□ 1.15
COL1A2-207ENST00000478215 TRIM41Q8WV44 630 aa22.21■■□□□ 1.15
COL1A2-207ENST00000478215 SHROOM2Q13796 1616 aa22.2■■□□□ 1.15
COL1A2-207ENST00000478215 ARAP1Q96P48 1450 aa22.19■■□□□ 1.14
COL1A2-207ENST00000478215 ERCC6L2Q5T890 1561 aa22.16■■□□□ 1.14
COL1A2-207ENST00000478215 CARMIL1Q5VZK9 1371 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 155.8 ms