RNA–Protein interactions for RNA: ENST00000478188.5

POLR2B-208, Transcript of RNA polymerase II subunit B, humanhuman

TSL 2

Gene POLR2B, Length 3,093 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2B-208ENST00000478188 AEBP2Q6ZN18 517 aaPredicted RBP12.73□□□□□ -0.37
POLR2B-208ENST00000478188 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
POLR2B-208ENST00000478188 SENP3Q9H4L4 574 aaPredicted RBP10.97□□□□□ -0.65
POLR2B-208ENST00000478188 PHF23Q9BUL5 403 aaPredicted RBP10.79□□□□□ -0.68
POLR2B-208ENST00000478188 NISCHQ9Y2I1 1504 aa10.78□□□□□ -0.68
POLR2B-208ENST00000478188 FOXD1Q16676 465 aa10.16□□□□□ -0.78
POLR2B-208ENST00000478188 PLPPR3Q6T4P5 718 aa9.76□□□□□ -0.85
POLR2B-208ENST00000478188 CCDC180Q9P1Z9 1646 aa9.69□□□□□ -0.86
POLR2B-208ENST00000478188 MSH5O43196 834 aa9.59□□□□□ -0.87
POLR2B-208ENST00000478188 PIAS4Q8N2W9 510 aaPredicted RBP9.54□□□□□ -0.88
POLR2B-208ENST00000478188 ADRA2BP18089 450 aa9.46□□□□□ -0.89
POLR2B-208ENST00000478188 PPP6R1Q9UPN7 881 aa9.46□□□□□ -0.89
POLR2B-208ENST00000478188 ABCC9O60706 1549 aa9.34□□□□□ -0.91
POLR2B-208ENST00000478188 POTEDQ86YR6 584 aa9.29□□□□□ -0.92
POLR2B-208ENST00000478188 NACADO15069 1562 aa9.04□□□□□ -0.96
POLR2B-208ENST00000478188 RB1CC1Q8TDY2 1594 aa9.04□□□□□ -0.96
POLR2B-208ENST00000478188 MYO15BQ96JP2 1530 aa9.03□□□□□ -0.96
POLR2B-208ENST00000478188 DNAJC5Q9H3Z4 198 aa9.02□□□□□ -0.97
POLR2B-208ENST00000478188 ZCCHC6Q5VYS8 1495 aaKnown RBP9.01□□□□□ -0.97
POLR2B-208ENST00000478188 DNAJC5BQ9UF47 199 aa9.01□□□□□ -0.97
POLR2B-208ENST00000478188 UNC13AQ9UPW8 1703 aa8.99□□□□□ -0.97
POLR2B-208ENST00000478188 DCAF1Q9Y4B6 1507 aa8.98□□□□□ -0.97
POLR2B-208ENST00000478188 BICRAQ9NZM4 1560 aa8.87□□□□□ -0.99
POLR2B-208ENST00000478188 SCAF1Q9H7N4 1312 aaKnown RBP8.78□□□□□ -1
POLR2B-208ENST00000478188 SHROOM4Q9ULL8 1493 aa8.76□□□□□ -1.01
POLR2B-208ENST00000478188 SCRIBQ14160 1630 aa8.74□□□□□ -1.01
POLR2B-208ENST00000478188 DCAF8L2P0C7V8 631 aa8.68□□□□□ -1.02
POLR2B-208ENST00000478188 MAPK8IP2Q13387 824 aaPredicted RBP8.67□□□□□ -1.02
POLR2B-208ENST00000478188 DMRT2Q9Y5R5 561 aa8.67□□□□□ -1.02
POLR2B-208ENST00000478188 PABPN1Q86U42 306 aaKnown RBP eCLIP8.64□□□□□ -1.03
POLR2B-208ENST00000478188 CUX2O14529 1486 aa8.58□□□□□ -1.04
POLR2B-208ENST00000478188 EIF4G1Q04637 1599 aaKnown RBP8.57□□□□□ -1.04
POLR2B-208ENST00000478188 CC2D2AQ9P2K1 1620 aa8.54□□□□□ -1.04
POLR2B-208ENST00000478188 PPP4R3CPQ6ZMV5 832 aa8.53□□□□□ -1.04
POLR2B-208ENST00000478188 CECR2Q9BXF3 1484 aa8.41□□□□□ -1.06
POLR2B-208ENST00000478188 SMARCA4P51532 1647 aa8.41□□□□□ -1.06
POLR2B-208ENST00000478188 CNKSR2Q8WXI2 1034 aa8.39□□□□□ -1.07
POLR2B-208ENST00000478188 PEG3Q9GZU2 1588 aa8.38□□□□□ -1.07
POLR2B-208ENST00000478188 DCAF8L1A6NGE4 600 aa8.36□□□□□ -1.07
POLR2B-208ENST00000478188 HOXD11P31277 338 aaPredicted RBP8.35□□□□□ -1.07
POLR2B-208ENST00000478188 BAZ1AQ9NRL2 1556 aaPredicted RBP8.34□□□□□ -1.07
POLR2B-208ENST00000478188 HMGXB3Q12766 1538 aa8.33□□□□□ -1.08
POLR2B-208ENST00000478188 NCAPD3P42695 1498 aa8.33□□□□□ -1.08
POLR2B-208ENST00000478188 ATAD2BQ9ULI0 1458 aa8.32□□□□□ -1.08
POLR2B-208ENST00000478188 MROH2BQ7Z745 1585 aa8.31□□□□□ -1.08
POLR2B-208ENST00000478188 RNF216Q9NWF9 866 aaPredicted RBP8.31□□□□□ -1.08
POLR2B-208ENST00000478188 SMARCA2P51531 1590 aa8.3□□□□□ -1.08
POLR2B-208ENST00000478188 NCBP3Q53F19 620 aaKnown RBP8.27□□□□□ -1.09
POLR2B-208ENST00000478188 WIZO95785 1651 aa8.24□□□□□ -1.09
POLR2B-208ENST00000478188 CACNB1Q02641 598 aaPredicted RBP8.23□□□□□ -1.09
POLR2B-208ENST00000478188 BAZ1BQ9UIG0 1483 aaKnown RBP8.2□□□□□ -1.1
POLR2B-208ENST00000478188 RSF1Q96T23 1441 aaPredicted RBP8.17□□□□□ -1.1
POLR2B-208ENST00000478188 TOP2AP11388 1531 aaKnown RBP8.14□□□□□ -1.11
POLR2B-208ENST00000478188 LAMC3Q9Y6N6 1575 aa8.13□□□□□ -1.11
POLR2B-208ENST00000478188 RNF39Q9H2S5 420 aa8.13□□□□□ -1.11
POLR2B-208ENST00000478188 NESP48681 1621 aa8.13□□□□□ -1.11
POLR2B-208ENST00000478188 THOC2Q8NI27 1593 aaKnown RBP8.12□□□□□ -1.11
POLR2B-208ENST00000478188 KIF21AQ7Z4S6 1674 aa8.11□□□□□ -1.11
POLR2B-208ENST00000478188 PRDM2Q13029 1718 aa8.1□□□□□ -1.11
POLR2B-208ENST00000478188 NPM3O75607 178 aaKnown RBP8.06□□□□□ -1.12
POLR2B-208ENST00000478188 C1QBPQ07021 282 aaKnown RBP8.06□□□□□ -1.12
POLR2B-208ENST00000478188 CFTRP13569 1480 aa8.02□□□□□ -1.12
POLR2B-208ENST00000478188 CADPSQ9ULU8 1353 aa8.02□□□□□ -1.13
POLR2B-208ENST00000478188 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.01□□□□□ -1.136e-8■□□□□ 10.4
POLR2B-208ENST00000478188 WDR62O43379 1518 aa8□□□□□ -1.13
POLR2B-208ENST00000478188 CCDC88BA6NC98 1476 aa8□□□□□ -1.13
POLR2B-208ENST00000478188 ERCC6Q03468 1493 aa7.99□□□□□ -1.13
POLR2B-208ENST00000478188 KCNA4P22459 653 aa7.98□□□□□ -1.13
POLR2B-208ENST00000478188 PDS5BQ9NTI5 1447 aa7.97□□□□□ -1.13
POLR2B-208ENST00000478188 MRC2Q9UBG0 1479 aa7.96□□□□□ -1.14
POLR2B-208ENST00000478188 FANCD2Q9BXW9 1451 aa7.95□□□□□ -1.14
POLR2B-208ENST00000478188 CEP164Q9UPV0 1460 aa7.93□□□□□ -1.14
POLR2B-208ENST00000478188 URB2Q14146 1524 aaKnown RBP7.93□□□□□ -1.14
POLR2B-208ENST00000478188 RIMBP3CA6NJZ7 1639 aa7.86□□□□□ -1.15
POLR2B-208ENST00000478188 RIMBP3BA6NNM3 1639 aa7.86□□□□□ -1.15
POLR2B-208ENST00000478188 RIMBP3Q9UFD9 1639 aa7.86□□□□□ -1.15
POLR2B-208ENST00000478188 DNMBPQ6XZF7 1577 aa7.86□□□□□ -1.15
POLR2B-208ENST00000478188 TOPBP1Q92547 1522 aa7.85□□□□□ -1.15
POLR2B-208ENST00000478188 TARBP1Q13395 1621 aaKnown RBP7.85□□□□□ -1.15
POLR2B-208ENST00000478188 TRIM41Q8WV44 630 aa7.84□□□□□ -1.15
POLR2B-208ENST00000478188 WDR97A6NE52 1622 aa7.84□□□□□ -1.15
POLR2B-208ENST00000478188 CUX1P39880 1505 aa7.81□□□□□ -1.16
POLR2B-208ENST00000478188 ABCC8Q09428 1581 aa7.8□□□□□ -1.16
POLR2B-208ENST00000478188 EIF4G3O43432 1585 aaKnown RBP7.79□□□□□ -1.16
POLR2B-208ENST00000478188 BIVM-ERCC5R4GMW8 1640 aa7.79□□□□□ -1.16
POLR2B-208ENST00000478188 IFT140Q96RY7 1462 aa7.78□□□□□ -1.16
POLR2B-208ENST00000478188 POLA1P09884 1462 aaPredicted RBP7.78□□□□□ -1.16
POLR2B-208ENST00000478188 ZNF608Q9ULD9 1512 aaPredicted RBP7.77□□□□□ -1.17
POLR2B-208ENST00000478188 U3KPZ7 1027 aaPredicted RBP7.77□□□□□ -1.17
POLR2B-208ENST00000478188 SYNJ1O43426 1573 aa7.74□□□□□ -1.17
POLR2B-208ENST00000478188 TOP2BQ02880 1626 aa7.74□□□□□ -1.17
POLR2B-208ENST00000478188 FGD5Q6ZNL6 1462 aa7.74□□□□□ -1.17
POLR2B-208ENST00000478188 ABCA5Q8WWZ7 1642 aa7.74□□□□□ -1.17
POLR2B-208ENST00000478188 PBRM1Q86U86 1689 aa7.72□□□□□ -1.17
POLR2B-208ENST00000478188 CHD1O14646 1710 aa7.72□□□□□ -1.17
POLR2B-208ENST00000478188 RAD54L2Q9Y4B4 1467 aa7.71□□□□□ -1.17
POLR2B-208ENST00000478188 CAPN15O75808 1086 aa7.7□□□□□ -1.18
POLR2B-208ENST00000478188 ARHGEF11O15085 1522 aa7.7□□□□□ -1.18
POLR2B-208ENST00000478188 SUPT5HO00267 1087 aaKnown RBP7.7□□□□□ -1.18
POLR2B-208ENST00000478188 APLP2Q06481 763 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms