RNA–Protein interactions for RNA: ENST00000478169.5

CCM2-210, Transcript of CCM2 scaffold protein, humanhuman

TSL 4

Gene CCM2, Length 542 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-210ENST00000478169 NISCHQ9Y2I1 1504 aa24.44■■□□□ 1.5
CCM2-210ENST00000478169 ABCC9O60706 1549 aa22.1■■□□□ 1.13
CCM2-210ENST00000478169 CCDC180Q9P1Z9 1646 aa22.03■■□□□ 1.12
CCM2-210ENST00000478169 RB1CC1Q8TDY2 1594 aa21.02■□□□□ 0.96
CCM2-210ENST00000478169 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
CCM2-210ENST00000478169 NACADO15069 1562 aa20.85■□□□□ 0.93
CCM2-210ENST00000478169 DCAF8L2P0C7V8 631 aa20.65■□□□□ 0.9
CCM2-210ENST00000478169 UNC13AQ9UPW8 1703 aa20.58■□□□□ 0.88
CCM2-210ENST00000478169 PABPN1Q86U42 306 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCM2-210ENST00000478169 MYO15BQ96JP2 1530 aa20.54■□□□□ 0.88
CCM2-210ENST00000478169 BICRAQ9NZM4 1560 aa20.39■□□□□ 0.85
CCM2-210ENST00000478169 ZCCHC6Q5VYS8 1495 aaKnown RBP20.21■□□□□ 0.83
CCM2-210ENST00000478169 DCAF1Q9Y4B6 1507 aa20.21■□□□□ 0.83
CCM2-210ENST00000478169 SHROOM4Q9ULL8 1493 aa20.16■□□□□ 0.82
CCM2-210ENST00000478169 SCRIBQ14160 1630 aa20■□□□□ 0.79
CCM2-210ENST00000478169 CC2D2AQ9P2K1 1620 aa19.99■□□□□ 0.79
CCM2-210ENST00000478169 CECR2Q9BXF3 1484 aa19.95■□□□□ 0.78
CCM2-210ENST00000478169 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
CCM2-210ENST00000478169 DNAJC5Q9H3Z4 198 aa19.31■□□□□ 0.68
CCM2-210ENST00000478169 NCAPD3P42695 1498 aa19.24■□□□□ 0.67
CCM2-210ENST00000478169 CUX2O14529 1486 aa19.16■□□□□ 0.66
CCM2-210ENST00000478169 ATAD2BQ9ULI0 1458 aa19.14■□□□□ 0.65
CCM2-210ENST00000478169 ERCC6Q03468 1493 aa19.11■□□□□ 0.65
CCM2-210ENST00000478169 SMARCA2P51531 1590 aa19.1■□□□□ 0.65
CCM2-210ENST00000478169 SMARCA4P51532 1647 aa19.1■□□□□ 0.65
CCM2-210ENST00000478169 HMGXB3Q12766 1538 aa19.09■□□□□ 0.65
CCM2-210ENST00000478169 BAZ1AQ9NRL2 1556 aaPredicted RBP18.99■□□□□ 0.63
CCM2-210ENST00000478169 BAZ1BQ9UIG0 1483 aaKnown RBP18.95■□□□□ 0.62
CCM2-210ENST00000478169 NESP48681 1621 aa18.94■□□□□ 0.62
CCM2-210ENST00000478169 PEG3Q9GZU2 1588 aa18.93■□□□□ 0.62
CCM2-210ENST00000478169 LAMC3Q9Y6N6 1575 aa18.85■□□□□ 0.61
CCM2-210ENST00000478169 MROH2BQ7Z745 1585 aa18.81■□□□□ 0.6
CCM2-210ENST00000478169 THOC2Q8NI27 1593 aaKnown RBP18.81■□□□□ 0.6
CCM2-210ENST00000478169 PDS5BQ9NTI5 1447 aa18.74■□□□□ 0.59
CCM2-210ENST00000478169 KIF21AQ7Z4S6 1674 aa18.73■□□□□ 0.59
CCM2-210ENST00000478169 CADPSQ9ULU8 1353 aa18.65■□□□□ 0.58
CCM2-210ENST00000478169 WIZO95785 1651 aa18.58■□□□□ 0.57
CCM2-210ENST00000478169 MRC2Q9UBG0 1479 aa18.56■□□□□ 0.56
CCM2-210ENST00000478169 WDR62O43379 1518 aa18.53■□□□□ 0.56
CCM2-210ENST00000478169 CEP164Q9UPV0 1460 aa18.45■□□□□ 0.54
CCM2-210ENST00000478169 FANCD2Q9BXW9 1451 aa18.41■□□□□ 0.54
CCM2-210ENST00000478169 CFTRP13569 1480 aa18.4■□□□□ 0.54
CCM2-210ENST00000478169 RSF1Q96T23 1441 aaPredicted RBP18.37■□□□□ 0.53
CCM2-210ENST00000478169 TRIM41Q8WV44 630 aa18.35■□□□□ 0.53
CCM2-210ENST00000478169 TOP2AP11388 1531 aaKnown RBP18.34■□□□□ 0.53
CCM2-210ENST00000478169 OSCARQ8IYS5 282 aa18.26■□□□□ 0.51
CCM2-210ENST00000478169 URB2Q14146 1524 aaKnown RBP18.26■□□□□ 0.51
CCM2-210ENST00000478169 PRDM2Q13029 1718 aa18.26■□□□□ 0.51
CCM2-210ENST00000478169 AEBP2Q6ZN18 517 aaPredicted RBP18.17■□□□□ 0.5
CCM2-210ENST00000478169 CCDC88BA6NC98 1476 aa18.13■□□□□ 0.49
CCM2-210ENST00000478169 IFT140Q96RY7 1462 aa18.11■□□□□ 0.49
CCM2-210ENST00000478169 TOPBP1Q92547 1522 aa18.06■□□□□ 0.48
CCM2-210ENST00000478169 ABCC8Q09428 1581 aa18.05■□□□□ 0.48
CCM2-210ENST00000478169 ZNF608Q9ULD9 1512 aaPredicted RBP18.05■□□□□ 0.48
CCM2-210ENST00000478169 RIMBP3CA6NJZ7 1639 aa18.02■□□□□ 0.48
CCM2-210ENST00000478169 RIMBP3BA6NNM3 1639 aa18.02■□□□□ 0.48
CCM2-210ENST00000478169 RIMBP3Q9UFD9 1639 aa18.02■□□□□ 0.48
CCM2-210ENST00000478169 DNMBPQ6XZF7 1577 aa17.99■□□□□ 0.47
CCM2-210ENST00000478169 EIF4G3O43432 1585 aaKnown RBP17.96■□□□□ 0.47
CCM2-210ENST00000478169 ARHGEF11O15085 1522 aa17.94■□□□□ 0.46
CCM2-210ENST00000478169 TARBP1Q13395 1621 aaKnown RBP17.91■□□□□ 0.46
CCM2-210ENST00000478169 CHD1O14646 1710 aa17.89■□□□□ 0.45
CCM2-210ENST00000478169 AQRO60306 1485 aaKnown RBP eCLIP17.88■□□□□ 0.45
CCM2-210ENST00000478169 POLA1P09884 1462 aaPredicted RBP17.85■□□□□ 0.45
CCM2-210ENST00000478169 CYB5RLQ6IPT4 315 aa17.81■□□□□ 0.44
CCM2-210ENST00000478169 FBLN2P98095 1184 aa17.79■□□□□ 0.44
CCM2-210ENST00000478169 SOGA1O94964 1423 aa17.78■□□□□ 0.44
CCM2-210ENST00000478169 RAD54L2Q9Y4B4 1467 aa17.77■□□□□ 0.44
CCM2-210ENST00000478169 WDR97A6NE52 1622 aa17.76■□□□□ 0.43
CCM2-210ENST00000478169 TDRD9Q8NDG6 1382 aaKnown RBP17.75■□□□□ 0.43
CCM2-210ENST00000478169 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
CCM2-210ENST00000478169 FGD5Q6ZNL6 1462 aa17.71■□□□□ 0.43
CCM2-210ENST00000478169 SNAPC4Q5SXM2 1469 aa17.69■□□□□ 0.42
CCM2-210ENST00000478169 MAGI1Q96QZ7 1491 aaPredicted RBP17.68■□□□□ 0.42
CCM2-210ENST00000478169 CUX1P39880 1505 aa17.67■□□□□ 0.42
CCM2-210ENST00000478169 TRHP20396 242 aaPredicted RBP17.66■□□□□ 0.42
CCM2-210ENST00000478169 CHMP7Q8WUX9 453 aaPredicted RBP17.66■□□□□ 0.42
CCM2-210ENST00000478169 CLASP1Q7Z460 1538 aa17.66■□□□□ 0.42
CCM2-210ENST00000478169 SYNJ1O43426 1573 aa17.65■□□□□ 0.42
CCM2-210ENST00000478169 GRIN2BQ13224 1484 aa17.64■□□□□ 0.41
CCM2-210ENST00000478169 SYNJ2O15056 1496 aa17.61■□□□□ 0.41
CCM2-210ENST00000478169 PBRM1Q86U86 1689 aa17.58■□□□□ 0.41
CCM2-210ENST00000478169 GAPVD1Q14C86 1478 aa17.56■□□□□ 0.4
CCM2-210ENST00000478169 ABCA10Q8WWZ4 1543 aa17.53■□□□□ 0.4
CCM2-210ENST00000478169 ABCA5Q8WWZ7 1642 aa17.51■□□□□ 0.39
CCM2-210ENST00000478169 WRNQ14191 1432 aaPredicted RBP eCLIP17.43■□□□□ 0.38
CCM2-210ENST00000478169 SUPT5HO00267 1087 aaKnown RBP17.41■□□□□ 0.38
CCM2-210ENST00000478169 GRIN2AQ12879 1464 aa17.41■□□□□ 0.38
CCM2-210ENST00000478169 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.37
CCM2-210ENST00000478169 ADAMTS12P58397 1594 aa17.38■□□□□ 0.37
CCM2-210ENST00000478169 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
CCM2-210ENST00000478169 NUP160Q12769 1436 aa17.37■□□□□ 0.37
CCM2-210ENST00000478169 CEP170Q5SW79 1584 aa17.35■□□□□ 0.37
CCM2-210ENST00000478169 ERCC6L2Q5T890 1561 aa17.35■□□□□ 0.37
CCM2-210ENST00000478169 FHAD1B1AJZ9 1412 aa17.34■□□□□ 0.37
CCM2-210ENST00000478169 SHROOM2Q13796 1616 aa17.32■□□□□ 0.36
CCM2-210ENST00000478169 ERICH3Q5RHP9 1530 aa17.31■□□□□ 0.36
CCM2-210ENST00000478169 PRG4Q92954 1404 aaPredicted RBP17.21■□□□□ 0.34
CCM2-210ENST00000478169 JPH4Q96JJ6 628 aa17.2■□□□□ 0.34
CCM2-210ENST00000478169 KIF13AQ9H1H9 1805 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms