RNA–Protein interactions for RNA: ENST00000478061.5

RBM28-204, Transcript of RNA binding motif protein 28, humanhuman

TSL 3

Gene RBM28, Length 932 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM28-204ENST00000478061 NISCHQ9Y2I1 1504 aa30.71■■■□□ 2.51
RBM28-204ENST00000478061 CCDC180Q9P1Z9 1646 aa27.13■■□□□ 1.93
RBM28-204ENST00000478061 ABCC9O60706 1549 aa26.43■■□□□ 1.82
RBM28-204ENST00000478061 ZCCHC6Q5VYS8 1495 aaKnown RBP25.62■■□□□ 1.69
RBM28-204ENST00000478061 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
RBM28-204ENST00000478061 NACADO15069 1562 aa25.5■■□□□ 1.67
RBM28-204ENST00000478061 RB1CC1Q8TDY2 1594 aa25.47■■□□□ 1.67
RBM28-204ENST00000478061 MYO15BQ96JP2 1530 aa25.43■■□□□ 1.66
RBM28-204ENST00000478061 DCAF1Q9Y4B6 1507 aa25.4■■□□□ 1.66
RBM28-204ENST00000478061 UNC13AQ9UPW8 1703 aa24.84■■□□□ 1.57
RBM28-204ENST00000478061 SCRIBQ14160 1630 aa24.82■■□□□ 1.56
RBM28-204ENST00000478061 PABPN1Q86U42 306 aaKnown RBP eCLIP24.77■■□□□ 1.56
RBM28-204ENST00000478061 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
RBM28-204ENST00000478061 SHROOM4Q9ULL8 1493 aa24.46■■□□□ 1.51
RBM28-204ENST00000478061 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
RBM28-204ENST00000478061 EIF4G1Q04637 1599 aaKnown RBP24.03■■□□□ 1.44
RBM28-204ENST00000478061 CECR2Q9BXF3 1484 aa23.93■■□□□ 1.42
RBM28-204ENST00000478061 CC2D2AQ9P2K1 1620 aa23.88■■□□□ 1.41
RBM28-204ENST00000478061 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
RBM28-204ENST00000478061 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
RBM28-204ENST00000478061 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
RBM28-204ENST00000478061 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
RBM28-204ENST00000478061 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
RBM28-204ENST00000478061 SMARCA2P51531 1590 aa23.56■■□□□ 1.36
RBM28-204ENST00000478061 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
RBM28-204ENST00000478061 RSF1Q96T23 1441 aaPredicted RBP23.5■■□□□ 1.35
RBM28-204ENST00000478061 HMGXB3Q12766 1538 aa23.43■■□□□ 1.34
RBM28-204ENST00000478061 BAZ1BQ9UIG0 1483 aaKnown RBP23.41■■□□□ 1.34
RBM28-204ENST00000478061 WIZO95785 1651 aa23.39■■□□□ 1.34
RBM28-204ENST00000478061 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
RBM28-204ENST00000478061 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
RBM28-204ENST00000478061 NESP48681 1621 aa22.93■■□□□ 1.26
RBM28-204ENST00000478061 CCDC88BA6NC98 1476 aa22.93■■□□□ 1.26
RBM28-204ENST00000478061 CADPSQ9ULU8 1353 aa22.9■■□□□ 1.26
RBM28-204ENST00000478061 LAMC3Q9Y6N6 1575 aa22.86■■□□□ 1.25
RBM28-204ENST00000478061 CFTRP13569 1480 aa22.8■■□□□ 1.24
RBM28-204ENST00000478061 PDS5BQ9NTI5 1447 aa22.74■■□□□ 1.23
RBM28-204ENST00000478061 ERCC6Q03468 1493 aa22.74■■□□□ 1.23
RBM28-204ENST00000478061 FANCD2Q9BXW9 1451 aa22.62■■□□□ 1.21
RBM28-204ENST00000478061 KIF21AQ7Z4S6 1674 aa22.59■■□□□ 1.21
RBM28-204ENST00000478061 CEP164Q9UPV0 1460 aa22.56■■□□□ 1.2
RBM28-204ENST00000478061 PRDM2Q13029 1718 aa22.53■■□□□ 1.2
RBM28-204ENST00000478061 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
RBM28-204ENST00000478061 MRC2Q9UBG0 1479 aa22.49■■□□□ 1.19
RBM28-204ENST00000478061 CUX2O14529 1486 aa22.42■■□□□ 1.18
RBM28-204ENST00000478061 WDR62O43379 1518 aa22.39■■□□□ 1.17
RBM28-204ENST00000478061 URB2Q14146 1524 aaKnown RBP22.39■■□□□ 1.17
RBM28-204ENST00000478061 TOPBP1Q92547 1522 aa22.28■■□□□ 1.16
RBM28-204ENST00000478061 ABCC8Q09428 1581 aa22.27■■□□□ 1.16
RBM28-204ENST00000478061 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
RBM28-204ENST00000478061 CUX1P39880 1505 aa22.2■■□□□ 1.14
RBM28-204ENST00000478061 WRNQ14191 1432 aaPredicted RBP eCLIP22.14■■□□□ 1.13
RBM28-204ENST00000478061 POLA1P09884 1462 aaPredicted RBP22.11■■□□□ 1.13
RBM28-204ENST00000478061 IFT140Q96RY7 1462 aa22.09■■□□□ 1.13
RBM28-204ENST00000478061 FGD5Q6ZNL6 1462 aa22.08■■□□□ 1.12
RBM28-204ENST00000478061 SYNJ1O43426 1573 aa22.05■■□□□ 1.12
RBM28-204ENST00000478061 SOGA1O94964 1423 aa22.04■■□□□ 1.12
RBM28-204ENST00000478061 TOP2BQ02880 1626 aa22.03■■□□□ 1.12
RBM28-204ENST00000478061 RAD54L2Q9Y4B4 1467 aa22.03■■□□□ 1.12
RBM28-204ENST00000478061 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
RBM28-204ENST00000478061 TARBP1Q13395 1621 aaKnown RBP22■■□□□ 1.11
RBM28-204ENST00000478061 ZNF608Q9ULD9 1512 aaPredicted RBP21.99■■□□□ 1.11
RBM28-204ENST00000478061 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.15e-7■■■□□ 18.6
RBM28-204ENST00000478061 TDRD9Q8NDG6 1382 aaKnown RBP21.9■■□□□ 1.1
RBM28-204ENST00000478061 ABCA10Q8WWZ4 1543 aa21.89■■□□□ 1.09
RBM28-204ENST00000478061 EIF4G3O43432 1585 aaKnown RBP21.85■■□□□ 1.09
RBM28-204ENST00000478061 WDR97A6NE52 1622 aa21.83■■□□□ 1.08
RBM28-204ENST00000478061 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
RBM28-204ENST00000478061 GAPVD1Q14C86 1478 aa21.77■■□□□ 1.08
RBM28-204ENST00000478061 ABCA5Q8WWZ7 1642 aa21.75■■□□□ 1.07
RBM28-204ENST00000478061 GRIN2BQ13224 1484 aa21.74■■□□□ 1.07
RBM28-204ENST00000478061 CHIC1Q5VXU3 224 aa21.68■■□□□ 1.06
RBM28-204ENST00000478061 SNAPC4Q5SXM2 1469 aa21.68■■□□□ 1.06
RBM28-204ENST00000478061 MAGI1Q96QZ7 1491 aaPredicted RBP21.65■■□□□ 1.06
RBM28-204ENST00000478061 KIF27Q86VH2 1401 aa21.65■■□□□ 1.06
RBM28-204ENST00000478061 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
RBM28-204ENST00000478061 ERICH3Q5RHP9 1530 aa21.6■■□□□ 1.05
RBM28-204ENST00000478061 FBLN2P98095 1184 aa21.6■■□□□ 1.05
RBM28-204ENST00000478061 OSCARQ8IYS5 282 aa21.58■■□□□ 1.05
RBM28-204ENST00000478061 IGF1RP08069 1367 aa21.58■■□□□ 1.04
RBM28-204ENST00000478061 CHMP7Q8WUX9 453 aaPredicted RBP21.57■■□□□ 1.04
RBM28-204ENST00000478061 SYNJ2O15056 1496 aa21.57■■□□□ 1.04
RBM28-204ENST00000478061 DNAJC5Q9H3Z4 198 aa21.54■■□□□ 1.04
RBM28-204ENST00000478061 RUSC2Q8N2Y8 1516 aa21.54■■□□□ 1.04
RBM28-204ENST00000478061 FHAD1B1AJZ9 1412 aa21.54■■□□□ 1.04
RBM28-204ENST00000478061 ADAMTS12P58397 1594 aa21.53■■□□□ 1.04
RBM28-204ENST00000478061 CHD1O14646 1710 aa21.51■■□□□ 1.03
RBM28-204ENST00000478061 GRIN2AQ12879 1464 aa21.45■■□□□ 1.02
RBM28-204ENST00000478061 CARMIL1Q5VZK9 1371 aa21.44■■□□□ 1.02
RBM28-204ENST00000478061 CUL7Q14999 1698 aa21.42■■□□□ 1.02
RBM28-204ENST00000478061 EEA1Q15075 1411 aa21.38■■□□□ 1.01
RBM28-204ENST00000478061 NUP160Q12769 1436 aa21.37■■□□□ 1.01
RBM28-204ENST00000478061 CSRNP3Q8WYN3 585 aa21.35■■□□□ 1.01
RBM28-204ENST00000478061 CLASP1Q7Z460 1538 aa21.34■■□□□ 1.01
RBM28-204ENST00000478061 CEP170Q5SW79 1584 aa21.33■■□□□ 1.01
RBM28-204ENST00000478061 FAM9AQ8IZU1 332 aaPredicted RBP21.33■■□□□ 1.01
RBM28-204ENST00000478061 RAPGEF2Q9Y4G8 1499 aa21.32■■□□□ 1
RBM28-204ENST00000478061 PRXQ9BXM0 1461 aa21.31■■□□□ 1
RBM28-204ENST00000478061 KIAA0586Q9BVV6 1533 aa21.21■□□□□ 0.99
RBM28-204ENST00000478061 ARHGEF11O15085 1522 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms