RNA–Protein interactions for RNA: ENST00000477890.6

CPSF7-211, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,234 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-211ENST00000477890 NISCHQ9Y2I1 1504 aa29.51■■■□□ 2.32
CPSF7-211ENST00000477890 ABCC9O60706 1549 aa26.57■■□□□ 1.84
CPSF7-211ENST00000477890 CCDC180Q9P1Z9 1646 aa26.52■■□□□ 1.84
CPSF7-211ENST00000477890 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
CPSF7-211ENST00000477890 NACADO15069 1562 aa25.07■■□□□ 1.6
CPSF7-211ENST00000477890 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
CPSF7-211ENST00000477890 DNAJC5BQ9UF47 199 aa24.94■■□□□ 1.58
CPSF7-211ENST00000477890 PABPN1Q86U42 306 aaKnown RBP eCLIP24.73■■□□□ 1.55
CPSF7-211ENST00000477890 UNC13AQ9UPW8 1703 aa24.72■■□□□ 1.55
CPSF7-211ENST00000477890 MYO15BQ96JP2 1530 aa24.69■■□□□ 1.54
CPSF7-211ENST00000477890 BICRAQ9NZM4 1560 aa24.52■■□□□ 1.52
CPSF7-211ENST00000477890 ZCCHC6Q5VYS8 1495 aaKnown RBP24.45■■□□□ 1.51
CPSF7-211ENST00000477890 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
CPSF7-211ENST00000477890 SCRIBQ14160 1630 aa24.18■■□□□ 1.46
CPSF7-211ENST00000477890 SHROOM4Q9ULL8 1493 aa24.16■■□□□ 1.46
CPSF7-211ENST00000477890 CC2D2AQ9P2K1 1620 aa23.99■■□□□ 1.43
CPSF7-211ENST00000477890 EIF4G1Q04637 1599 aaKnown RBP23.93■■□□□ 1.42
CPSF7-211ENST00000477890 CECR2Q9BXF3 1484 aa23.93■■□□□ 1.42
CPSF7-211ENST00000477890 NCAPD3P42695 1498 aa23.13■■□□□ 1.29
CPSF7-211ENST00000477890 ATAD2BQ9ULI0 1458 aa23.06■■□□□ 1.28
CPSF7-211ENST00000477890 SMARCA4P51532 1647 aa23.04■■□□□ 1.28
CPSF7-211ENST00000477890 SMARCA2P51531 1590 aa23.01■■□□□ 1.27
CPSF7-211ENST00000477890 HMGXB3Q12766 1538 aa22.97■■□□□ 1.27
CPSF7-211ENST00000477890 ERCC6Q03468 1493 aa22.95■■□□□ 1.26
CPSF7-211ENST00000477890 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
CPSF7-211ENST00000477890 BAZ1AQ9NRL2 1556 aaPredicted RBP22.92■■□□□ 1.26
CPSF7-211ENST00000477890 CUX2O14529 1486 aa22.9■■□□□ 1.26
CPSF7-211ENST00000477890 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
CPSF7-211ENST00000477890 NESP48681 1621 aa22.81■■□□□ 1.24
CPSF7-211ENST00000477890 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
CPSF7-211ENST00000477890 MROH2BQ7Z745 1585 aa22.75■■□□□ 1.23
CPSF7-211ENST00000477890 LAMC3Q9Y6N6 1575 aa22.63■■□□□ 1.21
CPSF7-211ENST00000477890 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
CPSF7-211ENST00000477890 KIF21AQ7Z4S6 1674 aa22.54■■□□□ 1.2
CPSF7-211ENST00000477890 PDS5BQ9NTI5 1447 aa22.5■■□□□ 1.19
CPSF7-211ENST00000477890 WIZO95785 1651 aa22.49■■□□□ 1.19
CPSF7-211ENST00000477890 CADPSQ9ULU8 1353 aa22.43■■□□□ 1.18
CPSF7-211ENST00000477890 MRC2Q9UBG0 1479 aa22.32■■□□□ 1.16
CPSF7-211ENST00000477890 WDR62O43379 1518 aa22.26■■□□□ 1.15
CPSF7-211ENST00000477890 RSF1Q96T23 1441 aaPredicted RBP22.25■■□□□ 1.15
CPSF7-211ENST00000477890 CEP164Q9UPV0 1460 aa22.22■■□□□ 1.15
CPSF7-211ENST00000477890 FANCD2Q9BXW9 1451 aa22.19■■□□□ 1.14
CPSF7-211ENST00000477890 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
CPSF7-211ENST00000477890 CFTRP13569 1480 aa22.16■■□□□ 1.14
CPSF7-211ENST00000477890 URB2Q14146 1524 aaKnown RBP22.01■■□□□ 1.11
CPSF7-211ENST00000477890 PRDM2Q13029 1718 aa21.99■■□□□ 1.11
CPSF7-211ENST00000477890 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
CPSF7-211ENST00000477890 CCDC88BA6NC98 1476 aa21.94■■□□□ 1.1
CPSF7-211ENST00000477890 OSCARQ8IYS5 282 aa21.86■■□□□ 1.09
CPSF7-211ENST00000477890 IFT140Q96RY7 1462 aa21.77■■□□□ 1.08
CPSF7-211ENST00000477890 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
CPSF7-211ENST00000477890 ZNF608Q9ULD9 1512 aaPredicted RBP21.75■■□□□ 1.07
CPSF7-211ENST00000477890 ABCC8Q09428 1581 aa21.71■■□□□ 1.07
CPSF7-211ENST00000477890 DNMBPQ6XZF7 1577 aa21.69■■□□□ 1.06
CPSF7-211ENST00000477890 EIF4G3O43432 1585 aaKnown RBP21.64■■□□□ 1.05
CPSF7-211ENST00000477890 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
CPSF7-211ENST00000477890 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
CPSF7-211ENST00000477890 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
CPSF7-211ENST00000477890 TARBP1Q13395 1621 aaKnown RBP21.58■■□□□ 1.04
CPSF7-211ENST00000477890 AQRO60306 1485 aaKnown RBP eCLIP21.55■■□□□ 1.042e-7■■■■■ 40.5
CPSF7-211ENST00000477890 POLA1P09884 1462 aaPredicted RBP21.54■■□□□ 1.04
CPSF7-211ENST00000477890 CHD1O14646 1710 aa21.51■■□□□ 1.03
CPSF7-211ENST00000477890 ARHGEF11O15085 1522 aa21.5■■□□□ 1.03
CPSF7-211ENST00000477890 RAD54L2Q9Y4B4 1467 aa21.47■■□□□ 1.03
CPSF7-211ENST00000477890 SOGA1O94964 1423 aa21.45■■□□□ 1.02
CPSF7-211ENST00000477890 FBLN2P98095 1184 aa21.44■■□□□ 1.02
CPSF7-211ENST00000477890 FGD5Q6ZNL6 1462 aa21.41■■□□□ 1.02
CPSF7-211ENST00000477890 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
CPSF7-211ENST00000477890 CUX1P39880 1505 aa21.38■■□□□ 1.01
CPSF7-211ENST00000477890 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
CPSF7-211ENST00000477890 WDR97A6NE52 1622 aa21.34■■□□□ 1.01
CPSF7-211ENST00000477890 SNAPC4Q5SXM2 1469 aa21.33■■□□□ 1.01
CPSF7-211ENST00000477890 ARAP1Q96P48 1450 aa21.29■■□□□ 1
CPSF7-211ENST00000477890 SUPT5HO00267 1087 aaKnown RBP21.28■■□□□ 1
CPSF7-211ENST00000477890 MAGI1Q96QZ7 1491 aaPredicted RBP21.26■□□□□ 0.99
CPSF7-211ENST00000477890 CHMP7Q8WUX9 453 aaPredicted RBP21.26■□□□□ 0.99
CPSF7-211ENST00000477890 GRIN2BQ13224 1484 aa21.26■□□□□ 0.99
CPSF7-211ENST00000477890 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
CPSF7-211ENST00000477890 CLASP1Q7Z460 1538 aa21.22■□□□□ 0.99
CPSF7-211ENST00000477890 PBRM1Q86U86 1689 aa21.21■□□□□ 0.99
CPSF7-211ENST00000477890 SYNJ2O15056 1496 aa21.2■□□□□ 0.98
CPSF7-211ENST00000477890 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
CPSF7-211ENST00000477890 ABCA10Q8WWZ4 1543 aa21.15■□□□□ 0.98
CPSF7-211ENST00000477890 TRHP20396 242 aaPredicted RBP21.15■□□□□ 0.98
CPSF7-211ENST00000477890 ABCA5Q8WWZ7 1642 aa21.13■□□□□ 0.97
CPSF7-211ENST00000477890 WRNQ14191 1432 aaPredicted RBP eCLIP21.05■□□□□ 0.96
CPSF7-211ENST00000477890 BIVM-ERCC5R4GMW8 1640 aa21.04■□□□□ 0.96
CPSF7-211ENST00000477890 TOP2BQ02880 1626 aa21.03■□□□□ 0.96
CPSF7-211ENST00000477890 GRIN2AQ12879 1464 aa20.99■□□□□ 0.95
CPSF7-211ENST00000477890 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
CPSF7-211ENST00000477890 CEP170Q5SW79 1584 aa20.93■□□□□ 0.94
CPSF7-211ENST00000477890 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
CPSF7-211ENST00000477890 NUP160Q12769 1436 aa20.91■□□□□ 0.94
CPSF7-211ENST00000477890 ERCC6L2Q5T890 1561 aa20.9■□□□□ 0.94
CPSF7-211ENST00000477890 ERICH3Q5RHP9 1530 aa20.88■□□□□ 0.93
CPSF7-211ENST00000477890 SHROOM2Q13796 1616 aa20.83■□□□□ 0.93
CPSF7-211ENST00000477890 PRG4Q92954 1404 aaPredicted RBP20.72■□□□□ 0.91
CPSF7-211ENST00000477890 JPH4Q96JJ6 628 aa20.71■□□□□ 0.91
CPSF7-211ENST00000477890 RUSC2Q8N2Y8 1516 aa20.68■□□□□ 0.9
CPSF7-211ENST00000477890 KIF27Q86VH2 1401 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms