RNA–Protein interactions for RNA: ENST00000477477.1

HDLBP-236, Transcript of high density lipoprotein binding protein, humanhuman

TSL 5

Gene HDLBP, Length 340 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-236ENST00000477477 NISCHQ9Y2I1 1504 aa28.5■■■□□ 2.15
HDLBP-236ENST00000477477 CCDC180Q9P1Z9 1646 aa25.54■■□□□ 1.68
HDLBP-236ENST00000477477 ABCC9O60706 1549 aa25.52■■□□□ 1.68
HDLBP-236ENST00000477477 RB1CC1Q8TDY2 1594 aa24.3■■□□□ 1.48
HDLBP-236ENST00000477477 NACADO15069 1562 aa24.16■■□□□ 1.46
HDLBP-236ENST00000477477 DCAF8L2P0C7V8 631 aa23.99■■□□□ 1.43
HDLBP-236ENST00000477477 DNAJC5BQ9UF47 199 aa23.89■■□□□ 1.41
HDLBP-236ENST00000477477 MYO15BQ96JP2 1530 aa23.86■■□□□ 1.41
HDLBP-236ENST00000477477 PABPN1Q86U42 306 aaKnown RBP eCLIP23.75■■□□□ 1.39
HDLBP-236ENST00000477477 UNC13AQ9UPW8 1703 aa23.69■■□□□ 1.38
HDLBP-236ENST00000477477 ZCCHC6Q5VYS8 1495 aaKnown RBP23.66■■□□□ 1.38
HDLBP-236ENST00000477477 BICRAQ9NZM4 1560 aa23.6■■□□□ 1.37
HDLBP-236ENST00000477477 DCAF1Q9Y4B6 1507 aa23.57■■□□□ 1.36
HDLBP-236ENST00000477477 SHROOM4Q9ULL8 1493 aa23.33■■□□□ 1.33
HDLBP-236ENST00000477477 SCRIBQ14160 1630 aa23.28■■□□□ 1.32
HDLBP-236ENST00000477477 CC2D2AQ9P2K1 1620 aa23.04■■□□□ 1.28
HDLBP-236ENST00000477477 EIF4G1Q04637 1599 aaKnown RBP23.01■■□□□ 1.27
HDLBP-236ENST00000477477 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
HDLBP-236ENST00000477477 NCAPD3P42695 1498 aa22.31■■□□□ 1.16
HDLBP-236ENST00000477477 ATAD2BQ9ULI0 1458 aa22.24■■□□□ 1.15
HDLBP-236ENST00000477477 SMARCA4P51532 1647 aa22.21■■□□□ 1.15
HDLBP-236ENST00000477477 SMARCA2P51531 1590 aa22.18■■□□□ 1.14
HDLBP-236ENST00000477477 HMGXB3Q12766 1538 aa22.15■■□□□ 1.14
HDLBP-236ENST00000477477 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
HDLBP-236ENST00000477477 ERCC6Q03468 1493 aa22.03■■□□□ 1.12
HDLBP-236ENST00000477477 BAZ1BQ9UIG0 1483 aaKnown RBP22.03■■□□□ 1.12
HDLBP-236ENST00000477477 PEG3Q9GZU2 1588 aa22.02■■□□□ 1.12
HDLBP-236ENST00000477477 CUX2O14529 1486 aa22■■□□□ 1.11
HDLBP-236ENST00000477477 MROH2BQ7Z745 1585 aa21.96■■□□□ 1.11
HDLBP-236ENST00000477477 NESP48681 1621 aa21.93■■□□□ 1.1
HDLBP-236ENST00000477477 DNAJC5Q9H3Z4 198 aa21.92■■□□□ 1.1
HDLBP-236ENST00000477477 LAMC3Q9Y6N6 1575 aa21.78■■□□□ 1.08
HDLBP-236ENST00000477477 THOC2Q8NI27 1593 aaKnown RBP21.7■■□□□ 1.06
HDLBP-236ENST00000477477 PDS5BQ9NTI5 1447 aa21.67■■□□□ 1.06
HDLBP-236ENST00000477477 WIZO95785 1651 aa21.66■■□□□ 1.06
HDLBP-236ENST00000477477 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
HDLBP-236ENST00000477477 KIF21AQ7Z4S6 1674 aa21.61■■□□□ 1.05
HDLBP-236ENST00000477477 RSF1Q96T23 1441 aaPredicted RBP21.53■■□□□ 1.04
HDLBP-236ENST00000477477 MRC2Q9UBG0 1479 aa21.48■■□□□ 1.03
HDLBP-236ENST00000477477 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
HDLBP-236ENST00000477477 WDR62O43379 1518 aa21.43■■□□□ 1.02
HDLBP-236ENST00000477477 CEP164Q9UPV0 1460 aa21.4■■□□□ 1.02
HDLBP-236ENST00000477477 CFTRP13569 1480 aa21.39■■□□□ 1.02
HDLBP-236ENST00000477477 FANCD2Q9BXW9 1451 aa21.39■■□□□ 1.01
HDLBP-236ENST00000477477 URB2Q14146 1524 aaKnown RBP21.2■□□□□ 0.98
HDLBP-236ENST00000477477 CCDC88BA6NC98 1476 aa21.18■□□□□ 0.98
HDLBP-236ENST00000477477 PRDM2Q13029 1718 aa21.11■□□□□ 0.97
HDLBP-236ENST00000477477 IFT140Q96RY7 1462 aa20.99■□□□□ 0.95
HDLBP-236ENST00000477477 TOPBP1Q92547 1522 aa20.99■□□□□ 0.95
HDLBP-236ENST00000477477 OSCARQ8IYS5 282 aa20.97■□□□□ 0.95
HDLBP-236ENST00000477477 TRIM41Q8WV44 630 aa20.95■□□□□ 0.94
HDLBP-236ENST00000477477 ZNF608Q9ULD9 1512 aaPredicted RBP20.94■□□□□ 0.94
HDLBP-236ENST00000477477 ABCC8Q09428 1581 aa20.93■□□□□ 0.94
HDLBP-236ENST00000477477 DNMBPQ6XZF7 1577 aa20.9■□□□□ 0.94
HDLBP-236ENST00000477477 EIF4G3O43432 1585 aaKnown RBP20.81■□□□□ 0.92
HDLBP-236ENST00000477477 TARBP1Q13395 1621 aaKnown RBP20.78■□□□□ 0.92
HDLBP-236ENST00000477477 POLA1P09884 1462 aaPredicted RBP20.77■□□□□ 0.92
HDLBP-236ENST00000477477 AQRO60306 1485 aaKnown RBP eCLIP20.74■□□□□ 0.914e-9■■■■■ 32.2
HDLBP-236ENST00000477477 RIMBP3CA6NJZ7 1639 aa20.69■□□□□ 0.9
HDLBP-236ENST00000477477 RIMBP3BA6NNM3 1639 aa20.69■□□□□ 0.9
HDLBP-236ENST00000477477 RIMBP3Q9UFD9 1639 aa20.69■□□□□ 0.9
HDLBP-236ENST00000477477 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
HDLBP-236ENST00000477477 SOGA1O94964 1423 aa20.67■□□□□ 0.9
HDLBP-236ENST00000477477 ARHGEF11O15085 1522 aa20.65■□□□□ 0.9
HDLBP-236ENST00000477477 FGD5Q6ZNL6 1462 aa20.65■□□□□ 0.9
HDLBP-236ENST00000477477 CUX1P39880 1505 aa20.63■□□□□ 0.89
HDLBP-236ENST00000477477 TDRD9Q8NDG6 1382 aaKnown RBP20.62■□□□□ 0.89
HDLBP-236ENST00000477477 CHD1O14646 1710 aa20.61■□□□□ 0.89
HDLBP-236ENST00000477477 WDR97A6NE52 1622 aa20.59■□□□□ 0.89
HDLBP-236ENST00000477477 SUPT5HO00267 1087 aaKnown RBP20.57■□□□□ 0.88
HDLBP-236ENST00000477477 FBLN2P98095 1184 aa20.57■□□□□ 0.88
HDLBP-236ENST00000477477 SNAPC4Q5SXM2 1469 aa20.56■□□□□ 0.88
HDLBP-236ENST00000477477 MAGI1Q96QZ7 1491 aaPredicted RBP20.5■□□□□ 0.87
HDLBP-236ENST00000477477 GRIN2BQ13224 1484 aa20.5■□□□□ 0.87
HDLBP-236ENST00000477477 CYB5RLQ6IPT4 315 aa20.47■□□□□ 0.87
HDLBP-236ENST00000477477 ARAP1Q96P48 1450 aa20.46■□□□□ 0.87
HDLBP-236ENST00000477477 CHMP7Q8WUX9 453 aaPredicted RBP20.45■□□□□ 0.86
HDLBP-236ENST00000477477 CLASP1Q7Z460 1538 aa20.43■□□□□ 0.86
HDLBP-236ENST00000477477 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
HDLBP-236ENST00000477477 ABCA10Q8WWZ4 1543 aa20.43■□□□□ 0.86
HDLBP-236ENST00000477477 GAPVD1Q14C86 1478 aa20.42■□□□□ 0.86
HDLBP-236ENST00000477477 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
HDLBP-236ENST00000477477 ABCA5Q8WWZ7 1642 aa20.38■□□□□ 0.85
HDLBP-236ENST00000477477 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
HDLBP-236ENST00000477477 WRNQ14191 1432 aaPredicted RBP eCLIP20.34■□□□□ 0.85
HDLBP-236ENST00000477477 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
HDLBP-236ENST00000477477 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
HDLBP-236ENST00000477477 GRIN2AQ12879 1464 aa20.24■□□□□ 0.83
HDLBP-236ENST00000477477 ADAMTS12P58397 1594 aa20.23■□□□□ 0.83
HDLBP-236ENST00000477477 TRHP20396 242 aaPredicted RBP20.22■□□□□ 0.83
HDLBP-236ENST00000477477 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
HDLBP-236ENST00000477477 NUP160Q12769 1436 aa20.18■□□□□ 0.82
HDLBP-236ENST00000477477 ERICH3Q5RHP9 1530 aa20.16■□□□□ 0.82
HDLBP-236ENST00000477477 CEP170Q5SW79 1584 aa20.15■□□□□ 0.82
HDLBP-236ENST00000477477 ERCC6L2Q5T890 1561 aa20.1■□□□□ 0.81
HDLBP-236ENST00000477477 SHROOM2Q13796 1616 aa20.05■□□□□ 0.8
HDLBP-236ENST00000477477 PRG4Q92954 1404 aaPredicted RBP19.95■□□□□ 0.78
HDLBP-236ENST00000477477 RUSC2Q8N2Y8 1516 aa19.94■□□□□ 0.78
HDLBP-236ENST00000477477 JPH4Q96JJ6 628 aa19.94■□□□□ 0.78
HDLBP-236ENST00000477477 KIF27Q86VH2 1401 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms