RNA–Protein interactions for RNA: ENST00000477174.1

ACTN4-205, Transcript of actinin alpha 4, humanhuman

TSL 3

Gene ACTN4, Length 544 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-205ENST00000477174 NISCHQ9Y2I1 1504 aa32.56■■■□□ 2.8
ACTN4-205ENST00000477174 CCDC180Q9P1Z9 1646 aa28.87■■■□□ 2.21
ACTN4-205ENST00000477174 ABCC9O60706 1549 aa28.4■■■□□ 2.14
ACTN4-205ENST00000477174 DCAF8L2P0C7V8 631 aa27.35■■□□□ 1.97
ACTN4-205ENST00000477174 RB1CC1Q8TDY2 1594 aa27.29■■□□□ 1.96
ACTN4-205ENST00000477174 NACADO15069 1562 aa27.26■■□□□ 1.96
ACTN4-205ENST00000477174 MYO15BQ96JP2 1530 aa27.12■■□□□ 1.93
ACTN4-205ENST00000477174 ZCCHC6Q5VYS8 1495 aaKnown RBP27.08■■□□□ 1.93
ACTN4-205ENST00000477174 DCAF1Q9Y4B6 1507 aa26.96■■□□□ 1.91
ACTN4-205ENST00000477174 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
ACTN4-205ENST00000477174 UNC13AQ9UPW8 1703 aa26.51■■□□□ 1.83
ACTN4-205ENST00000477174 BICRAQ9NZM4 1560 aa26.43■■□□□ 1.82
ACTN4-205ENST00000477174 SCRIBQ14160 1630 aa26.35■■□□□ 1.81
ACTN4-205ENST00000477174 DNAJC5BQ9UF47 199 aa26.24■■□□□ 1.79
ACTN4-205ENST00000477174 SHROOM4Q9ULL8 1493 aa26.23■■□□□ 1.79
ACTN4-205ENST00000477174 EIF4G1Q04637 1599 aaKnown RBP25.76■■□□□ 1.71
ACTN4-205ENST00000477174 CC2D2AQ9P2K1 1620 aa25.66■■□□□ 1.7
ACTN4-205ENST00000477174 CECR2Q9BXF3 1484 aa25.56■■□□□ 1.68
ACTN4-205ENST00000477174 BAZ1AQ9NRL2 1556 aaPredicted RBP25.23■■□□□ 1.63
ACTN4-205ENST00000477174 NCAPD3P42695 1498 aa25.22■■□□□ 1.63
ACTN4-205ENST00000477174 SMARCA4P51532 1647 aa25.22■■□□□ 1.63
ACTN4-205ENST00000477174 ATAD2BQ9ULI0 1458 aa25.19■■□□□ 1.62
ACTN4-205ENST00000477174 SMARCA2P51531 1590 aa25.13■■□□□ 1.61
ACTN4-205ENST00000477174 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
ACTN4-205ENST00000477174 PEG3Q9GZU2 1588 aa25.01■■□□□ 1.59
ACTN4-205ENST00000477174 HMGXB3Q12766 1538 aa25■■□□□ 1.59
ACTN4-205ENST00000477174 BAZ1BQ9UIG0 1483 aaKnown RBP24.96■■□□□ 1.59
ACTN4-205ENST00000477174 RSF1Q96T23 1441 aaPredicted RBP24.83■■□□□ 1.57
ACTN4-205ENST00000477174 WIZO95785 1651 aa24.74■■□□□ 1.55
ACTN4-205ENST00000477174 NESP48681 1621 aa24.55■■□□□ 1.52
ACTN4-205ENST00000477174 ERCC6Q03468 1493 aa24.51■■□□□ 1.51
ACTN4-205ENST00000477174 TOP2AP11388 1531 aaKnown RBP24.51■■□□□ 1.51
ACTN4-205ENST00000477174 CADPSQ9ULU8 1353 aa24.5■■□□□ 1.51
ACTN4-205ENST00000477174 LAMC3Q9Y6N6 1575 aa24.48■■□□□ 1.51
ACTN4-205ENST00000477174 PDS5BQ9NTI5 1447 aa24.42■■□□□ 1.5
ACTN4-205ENST00000477174 CFTRP13569 1480 aa24.3■■□□□ 1.48
ACTN4-205ENST00000477174 CCDC88BA6NC98 1476 aa24.29■■□□□ 1.48
ACTN4-205ENST00000477174 CUX2O14529 1486 aa24.28■■□□□ 1.48
ACTN4-205ENST00000477174 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
ACTN4-205ENST00000477174 FANCD2Q9BXW9 1451 aa24.16■■□□□ 1.46
ACTN4-205ENST00000477174 KIF21AQ7Z4S6 1674 aa24.15■■□□□ 1.46
ACTN4-205ENST00000477174 THOC2Q8NI27 1593 aaKnown RBP24.12■■□□□ 1.45
ACTN4-205ENST00000477174 CEP164Q9UPV0 1460 aa24.11■■□□□ 1.45
ACTN4-205ENST00000477174 MRC2Q9UBG0 1479 aa24.1■■□□□ 1.45
ACTN4-205ENST00000477174 WDR62O43379 1518 aa23.99■■□□□ 1.43
ACTN4-205ENST00000477174 URB2Q14146 1524 aaKnown RBP23.89■■□□□ 1.42
ACTN4-205ENST00000477174 PRDM2Q13029 1718 aa23.89■■□□□ 1.41
ACTN4-205ENST00000477174 ABCC8Q09428 1581 aa23.81■■□□□ 1.4
ACTN4-205ENST00000477174 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
ACTN4-205ENST00000477174 DNAJC5Q9H3Z4 198 aa23.73■■□□□ 1.39
ACTN4-205ENST00000477174 DNMBPQ6XZF7 1577 aa23.68■■□□□ 1.38
ACTN4-205ENST00000477174 IFT140Q96RY7 1462 aa23.64■■□□□ 1.38
ACTN4-205ENST00000477174 POLA1P09884 1462 aaPredicted RBP23.54■■□□□ 1.36
ACTN4-205ENST00000477174 CUX1P39880 1505 aa23.52■■□□□ 1.36
ACTN4-205ENST00000477174 SOGA1O94964 1423 aa23.5■■□□□ 1.35
ACTN4-205ENST00000477174 ZNF608Q9ULD9 1512 aaPredicted RBP23.5■■□□□ 1.35
ACTN4-205ENST00000477174 FGD5Q6ZNL6 1462 aa23.46■■□□□ 1.35
ACTN4-205ENST00000477174 RAD54L2Q9Y4B4 1467 aa23.44■■□□□ 1.34
ACTN4-205ENST00000477174 TARBP1Q13395 1621 aaKnown RBP23.44■■□□□ 1.34
ACTN4-205ENST00000477174 AQRO60306 1485 aaKnown RBP eCLIP23.41■■□□□ 1.341e-10■■■■□ 23.4
ACTN4-205ENST00000477174 WRNQ14191 1432 aaPredicted RBP eCLIP23.41■■□□□ 1.34
ACTN4-205ENST00000477174 OSCARQ8IYS5 282 aa23.4■■□□□ 1.34
ACTN4-205ENST00000477174 TDRD9Q8NDG6 1382 aaKnown RBP23.39■■□□□ 1.33
ACTN4-205ENST00000477174 EIF4G3O43432 1585 aaKnown RBP23.32■■□□□ 1.32
ACTN4-205ENST00000477174 TOP2BQ02880 1626 aa23.29■■□□□ 1.32
ACTN4-205ENST00000477174 WDR97A6NE52 1622 aa23.27■■□□□ 1.32
ACTN4-205ENST00000477174 ABCA10Q8WWZ4 1543 aa23.26■■□□□ 1.31
ACTN4-205ENST00000477174 SYNJ1O43426 1573 aa23.25■■□□□ 1.31
ACTN4-205ENST00000477174 BIVM-ERCC5R4GMW8 1640 aa23.23■■□□□ 1.31
ACTN4-205ENST00000477174 GRIN2BQ13224 1484 aa23.21■■□□□ 1.31
ACTN4-205ENST00000477174 GAPVD1Q14C86 1478 aa23.2■■□□□ 1.3
ACTN4-205ENST00000477174 FBLN2P98095 1184 aa23.2■■□□□ 1.3
ACTN4-205ENST00000477174 CHMP7Q8WUX9 453 aaPredicted RBP23.15■■□□□ 1.3
ACTN4-205ENST00000477174 SNAPC4Q5SXM2 1469 aa23.14■■□□□ 1.29
ACTN4-205ENST00000477174 MAGI1Q96QZ7 1491 aaPredicted RBP23.14■■□□□ 1.29
ACTN4-205ENST00000477174 ABCA5Q8WWZ7 1642 aa23.08■■□□□ 1.29
ACTN4-205ENST00000477174 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
ACTN4-205ENST00000477174 CHD1O14646 1710 aa23■■□□□ 1.27
ACTN4-205ENST00000477174 PBRM1Q86U86 1689 aa22.98■■□□□ 1.27
ACTN4-205ENST00000477174 ERICH3Q5RHP9 1530 aa22.97■■□□□ 1.27
ACTN4-205ENST00000477174 FHAD1B1AJZ9 1412 aa22.95■■□□□ 1.26
ACTN4-205ENST00000477174 KIF27Q86VH2 1401 aa22.95■■□□□ 1.26
ACTN4-205ENST00000477174 IGF1RP08069 1367 aa22.9■■□□□ 1.26
ACTN4-205ENST00000477174 TRIM41Q8WV44 630 aa22.89■■□□□ 1.25
ACTN4-205ENST00000477174 GRIN2AQ12879 1464 aa22.88■■□□□ 1.25
ACTN4-205ENST00000477174 ADAMTS12P58397 1594 aa22.87■■□□□ 1.25
ACTN4-205ENST00000477174 ARHGEF11O15085 1522 aa22.86■■□□□ 1.25
ACTN4-205ENST00000477174 CLASP1Q7Z460 1538 aa22.84■■□□□ 1.25
ACTN4-205ENST00000477174 RIMBP3CA6NJZ7 1639 aa22.82■■□□□ 1.24
ACTN4-205ENST00000477174 RIMBP3BA6NNM3 1639 aa22.82■■□□□ 1.24
ACTN4-205ENST00000477174 RIMBP3Q9UFD9 1639 aa22.82■■□□□ 1.24
ACTN4-205ENST00000477174 NUP160Q12769 1436 aa22.81■■□□□ 1.24
ACTN4-205ENST00000477174 CYB5RLQ6IPT4 315 aa22.77■■□□□ 1.24
ACTN4-205ENST00000477174 CARMIL1Q5VZK9 1371 aa22.75■■□□□ 1.23
ACTN4-205ENST00000477174 CEP170Q5SW79 1584 aa22.72■■□□□ 1.23
ACTN4-205ENST00000477174 CUL7Q14999 1698 aa22.68■■□□□ 1.22
ACTN4-205ENST00000477174 JPH4Q96JJ6 628 aa22.68■■□□□ 1.22
ACTN4-205ENST00000477174 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
ACTN4-205ENST00000477174 RUSC2Q8N2Y8 1516 aa22.66■■□□□ 1.22
ACTN4-205ENST00000477174 KIAA0586Q9BVV6 1533 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms